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The map label for this gene is ybbN [H]

Identifier: 209551346

GI number: 209551346

Start: 3898472

End: 3899446

Strand: Reverse

Name: ybbN [H]

Synonym: Rleg2_3775

Alternate gene names: 209551346

Gene position: 3899446-3898472 (Counterclockwise)

Preceding gene: 209551347

Following gene: 209551345

Centisome position: 85.93

GC content: 63.59

Gene sequence:

>975_bases
ATGAGCGGCAGCGACAACCCCTACAACGGTTCCTTCGGAAATCAGATGACGGCGACGACAAGCTTCGGCGCTCAGCCGGC
AACCGCCGCTGCGGCAGGCAGCTATATCACCGATACGACGACCGCGAATTTCGGCAAGGACGTCATCGAGGAATCGCGCA
ATCAGCCGGTGCTGGTCGATTTCTGGGCGCCCTGGTGCGGGCCGTGCAAACAGCTGACGCCTGTTTTGGAGAAGGTGGTC
AACGAAGCCAAGGGCCGCGTCCGGCTGGTCAAGATGAATATCGACGACCATCCCTCGATCGCCGGACAGCTCGGCATCCA
GTCTATCCCCGCCGTCATCGCCTTCGTCAACGGCCGCCCCGCCGACGGTTTCATGGGCGCGGTGCCGGAAAGCCAGATCC
AGCAATTCATCGACCGCATCGCCGGTCCGGCCGGCGCCGACGAGGCGGCCGAGATCGAGGCCGTGCTCACCGAAGCGGCA
GAATTGCTGGCCGCCGGCAATATCAATGAGGCAGCCCAGCTCTACGCCGCGGTGATGCAGGCCGATCCCGAAAATGCCAA
GGCGGTTGCCGGAATGGCCGAATGCATGATCGCCGCAAACCAGCATGAGCGGGCGCGCCAAACTTTGACGGATCTGCCGG
AAGAGCTGGCGAAAGACGCCGGCATCCAGGCGGTGCTGAAAAAGCTCGAACAGATCGAGGAAGCCCGCAAGCTCGGCGAT
CCCGTTGCGCTCGAACGTGATCTTGCCGCCAATCCCGACGACCACGAGGCGCGACTGAAGCTTGCCAAGATCCTCAATGT
CGAAGGCCGGCGCGACGAAGCGGCCGAGCACCTGCTGCTGATCATGCGCAAGGACCGCGCCTTTGACGATGACGGCGCCC
GCCGCCAGCTGCTGCAGTTCTTCGAGGTCTGGGGCTTCAAGGATCCGGCGACGGTTTCGGCCCGGCGCAAGCTTTCGGCG
ATGCTGTTCTCCTAG

Upstream 100 bases:

>100_bases
AGGCGACCGGACATAAGCCGCTTGTCTTGAAAGTGACGTCCTGACATACGATTTTAGCGCTACAATGAGGCCGGCAGGAT
CGGCACGGCGGGAGATACCT

Downstream 100 bases:

>100_bases
GGTGTTGCTGCTGCGTCCATAGGGCGCGGCAAGGCGCTGTGCCGCTTTGAAGCCGCGTCCGATCCTGTTGAAAGTCGATT
CCGATTTTCGGGGGTATGCG

Product: thioredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MSGSDNPYNGSFGNQMTATTSFGAQPATAAAAGSYITDTTTANFGKDVIEESRNQPVLVDFWAPWCGPCKQLTPVLEKVV
NEAKGRVRLVKMNIDDHPSIAGQLGIQSIPAVIAFVNGRPADGFMGAVPESQIQQFIDRIAGPAGADEAAEIEAVLTEAA
ELLAAGNINEAAQLYAAVMQADPENAKAVAGMAECMIAANQHERARQTLTDLPEELAKDAGIQAVLKKLEQIEEARKLGD
PVALERDLAANPDDHEARLKLAKILNVEGRRDEAAEHLLLIMRKDRAFDDDGARRQLLQFFEVWGFKDPATVSARRKLSA
MLFS

Sequences:

>Translated_324_residues
MSGSDNPYNGSFGNQMTATTSFGAQPATAAAAGSYITDTTTANFGKDVIEESRNQPVLVDFWAPWCGPCKQLTPVLEKVV
NEAKGRVRLVKMNIDDHPSIAGQLGIQSIPAVIAFVNGRPADGFMGAVPESQIQQFIDRIAGPAGADEAAEIEAVLTEAA
ELLAAGNINEAAQLYAAVMQADPENAKAVAGMAECMIAANQHERARQTLTDLPEELAKDAGIQAVLKKLEQIEEARKLGD
PVALERDLAANPDDHEARLKLAKILNVEGRRDEAAEHLLLIMRKDRAFDDDGARRQLLQFFEVWGFKDPATVSARRKLSA
MLFS
>Mature_323_residues
SGSDNPYNGSFGNQMTATTSFGAQPATAAAAGSYITDTTTANFGKDVIEESRNQPVLVDFWAPWCGPCKQLTPVLEKVVN
EAKGRVRLVKMNIDDHPSIAGQLGIQSIPAVIAFVNGRPADGFMGAVPESQIQQFIDRIAGPAGADEAAEIEAVLTEAAE
LLAAGNINEAAQLYAAVMQADPENAKAVAGMAECMIAANQHERARQTLTDLPEELAKDAGIQAVLKKLEQIEEARKLGDP
VALERDLAANPDDHEARLKLAKILNVEGRRDEAAEHLLLIMRKDRAFDDDGARRQLLQFFEVWGFKDPATVSARRKLSAM
LFS

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI21361403, Length=87, Percent_Identity=43.6781609195402, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI5031973, Length=89, Percent_Identity=35.9550561797753, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI87081747, Length=288, Percent_Identity=30.5555555555556, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI87082331, Length=103, Percent_Identity=38.8349514563107, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788936, Length=83, Percent_Identity=42.1686746987952, Blast_Score=91, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI212646193, Length=124, Percent_Identity=37.9032258064516, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17509965, Length=82, Percent_Identity=34.1463414634146, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71998175, Length=85, Percent_Identity=37.6470588235294, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI28573567, Length=121, Percent_Identity=36.3636363636364, Blast_Score=82, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24639826, Length=104, Percent_Identity=29.8076923076923, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI21358065, Length=95, Percent_Identity=35.7894736842105, Blast_Score=69, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 34939; Mature: 34808

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: PS50293 TPR_REGION ; PS00194 THIOREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGSDNPYNGSFGNQMTATTSFGAQPATAAAAGSYITDTTTANFGKDVIEESRNQPVLVD
CCCCCCCCCCCCCCCEEEECCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHCCCCCEEEE
FWAPWCGPCKQLTPVLEKVVNEAKGRVRLVKMNIDDHPSIAGQLGIQSIPAVIAFVNGRP
ECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHEECCCC
ADGFMGAVPESQIQQFIDRIAGPAGADEAAEIEAVLTEAAELLAAGNINEAAQLYAAVMQ
CCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ADPENAKAVAGMAECMIAANQHERARQTLTDLPEELAKDAGIQAVLKKLEQIEEARKLGD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
PVALERDLAANPDDHEARLKLAKILNVEGRRDEAAEHLLLIMRKDRAFDDDGARRQLLQF
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
FEVWGFKDPATVSARRKLSAMLFS
HHHHCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
SGSDNPYNGSFGNQMTATTSFGAQPATAAAAGSYITDTTTANFGKDVIEESRNQPVLVD
CCCCCCCCCCCCCCEEEECCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHCCCCCEEEE
FWAPWCGPCKQLTPVLEKVVNEAKGRVRLVKMNIDDHPSIAGQLGIQSIPAVIAFVNGRP
ECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHEECCCC
ADGFMGAVPESQIQQFIDRIAGPAGADEAAEIEAVLTEAAELLAAGNINEAAQLYAAVMQ
CCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ADPENAKAVAGMAECMIAANQHERARQTLTDLPEELAKDAGIQAVLKKLEQIEEARKLGD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
PVALERDLAANPDDHEARLKLAKILNVEGRRDEAAEHLLLIMRKDRAFDDDGARRQLLQF
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
FEVWGFKDPATVSARRKLSAMLFS
HHHHCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]