Click here to switch to the map view.

The map label for this gene is sigK [H]

Identifier: 209551298

GI number: 209551298

Start: 3854216

End: 3854776

Strand: Direct

Name: sigK [H]

Synonym: Rleg2_3726

Alternate gene names: 209551298

Gene position: 3854216-3854776 (Clockwise)

Preceding gene: 209551292

Following gene: 209551303

Centisome position: 84.93

GC content: 62.39

Gene sequence:

>561_bases
ATGGATGCCGAGCAAAGACAGCGTTTCGCTGCCCTCGCGAAGGCCGTCGCCAGGGATCGCGACCAGCAGGCCTTTTCCAT
CCTGTTCGATTATTTCGCACCGCGGCTGAAAGCCTGGCTGATGCGCCAGAAGATGACATCAGCCGAGGCCGAGGAACTGG
TCCAGGAGATCATGATCGTGCTCTGGCACAAGGCGGATCTCTACGATGCCACGCGATCTTCCCTTTCGACCTGGCTTTTC
CGCATCGCCCGCAATCGCCGCATCGACATGCAGCGCCGCATCAATACCCGCATTTTCGACGAGACCGATCCGGCCCTGCA
GCCGCCGGCCGAGATCGGCGCGGACGAAATCATCGCCAATGACGATCGCGACGCCAGGATACGCGCCGCCGTCGGCCAAT
TGCCGGAGGAGCAGCGCGACATGTTGCGTGCCGCCTTCTTCCTGGGTCAATCGCATTCGGAGATCGCCGAAGCGACCGGA
CTGCCGCTCGGCACGGTGAAATCGCGTATCCGGCTTGCCTTCGGCAAGCTCCGCAAGGTGCTGGAGCGCGAAAGCGCCTA
A

Upstream 100 bases:

>100_bases
AGATTCAGGCAAGAGTTTGACCTTTCCCAAATCCGTTGTACCTCAGTAAGACTTGGAAATCCGATACGAAATTATTGCCG
CAGGGGGCGCGTTAGGGGAC

Downstream 100 bases:

>100_bases
ATAGTTTTCATGGCTTCCTCAGTCCGGTCGGCCAGAACGCGGTCAGCCGCCTCATAATGGCCCGGGCGGATATGGCCGCG
CACCATGGCGAAGGCGGCCG

Product: ECF subfamily RNA polymerase sigma-24 subunit

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MDAEQRQRFAALAKAVARDRDQQAFSILFDYFAPRLKAWLMRQKMTSAEAEELVQEIMIVLWHKADLYDATRSSLSTWLF
RIARNRRIDMQRRINTRIFDETDPALQPPAEIGADEIIANDDRDARIRAAVGQLPEEQRDMLRAAFFLGQSHSEIAEATG
LPLGTVKSRIRLAFGKLRKVLERESA

Sequences:

>Translated_186_residues
MDAEQRQRFAALAKAVARDRDQQAFSILFDYFAPRLKAWLMRQKMTSAEAEELVQEIMIVLWHKADLYDATRSSLSTWLF
RIARNRRIDMQRRINTRIFDETDPALQPPAEIGADEIIANDDRDARIRAAVGQLPEEQRDMLRAAFFLGQSHSEIAEATG
LPLGTVKSRIRLAFGKLRKVLERESA
>Mature_186_residues
MDAEQRQRFAALAKAVARDRDQQAFSILFDYFAPRLKAWLMRQKMTSAEAEELVQEIMIVLWHKADLYDATRSSLSTWLF
RIARNRRIDMQRRINTRIFDETDPALQPPAEIGADEIIANDDRDARIRAAVGQLPEEQRDMLRAAFFLGQSHSEIAEATG
LPLGTVKSRIRLAFGKLRKVLERESA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 21388; Mature: 21388

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAEQRQRFAALAKAVARDRDQQAFSILFDYFAPRLKAWLMRQKMTSAEAEELVQEIMIV
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LWHKADLYDATRSSLSTWLFRIARNRRIDMQRRINTRIFDETDPALQPPAEIGADEIIAN
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHCCCHHHHCC
DDRDARIRAAVGQLPEEQRDMLRAAFFLGQSHSEIAEATGLPLGTVKSRIRLAFGKLRKV
CCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LERESA
HHHCCC
>Mature Secondary Structure
MDAEQRQRFAALAKAVARDRDQQAFSILFDYFAPRLKAWLMRQKMTSAEAEELVQEIMIV
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LWHKADLYDATRSSLSTWLFRIARNRRIDMQRRINTRIFDETDPALQPPAEIGADEIIAN
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHCCCHHHHCC
DDRDARIRAAVGQLPEEQRDMLRAAFFLGQSHSEIAEATGLPLGTVKSRIRLAFGKLRKV
CCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LERESA
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]