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The map label for this gene is yhcM [H]

Identifier: 209551258

GI number: 209551258

Start: 3816716

End: 3817876

Strand: Reverse

Name: yhcM [H]

Synonym: Rleg2_3686

Alternate gene names: 209551258

Gene position: 3817876-3816716 (Counterclockwise)

Preceding gene: 209551259

Following gene: 209551257

Centisome position: 84.13

GC content: 61.07

Gene sequence:

>1161_bases
ATGCAGCCAATGCCAGATTATGCGCTCAGCGTCTGCGAACAGCTTAAATCGCTGACGCTTTCCGGTGCGCTGCAGGTCGA
TTCCGCCCAGATGGATGTGGCCAAAAGCCTGGATCGGGTGCTTGCCGGGCTGAAGCAGCAACGGCCGGCGGCAAAATCGA
GCGCGCTTGGCTGGCTGTTTGCCGCCAAGAAGAAATCCGCCGCCGGCATCAAAGGGCTTTATATCCACGGCAGCGTTGGG
CGCGGCAAGACCATGCTGATGGACATGTTCTTCTCGATGGCGCCCTGCAAAAAGAAGCGGCGGGCGCATTTCCACGAATT
CATGGCGGATGTGCACAACCGCATCGCAGCGCACCGGCTGAAGCTCAAGAACGGCGAGACGAAGCAGGCCGATCCGATGC
CGCCGGTTGCCGCCGCCCTCTACGAGGAAGCGGAACTGCTCTGCTTCGACGAATTCACGGTCACCGATATCGCCGATGCA
ATGATCCTGTCGCGTCTGTTTGCCGAGCTTTTCGCGCGCGGATGCGTGCTGGTCGCGACCTCGAATGTCCAGCCCGACAA
TCTCTACCCGGATGGCCTAAACCGCGGCCTCTTCCTGCCCTTCGTCGCTCTTCTCAAGCAGCATGTCGACGTCGTCACCC
TGGATTCGCCGACCGATTACCGGATGGAGAAGCTGAGCAGCCAGCCGGTCTATCTGGTGCCGATCAACGACCATAACGAC
ATGGCGATGGATGCGTCCTGGACGCAGGCGCTGCACGGGCGCAAGGCGCAGCCGCTGGATATTCCGATGAAGGGGCGCCA
CATCCACGTGCCGCTCGCCGTCGAGCGCATGGCGCGGTTTTCCTTCACCGATCTGTGCGACAAGCCGCTTGGGGCGGTCG
ACTTCCTGGCGATCGCCGAGCGCTTCGACACGGTCTTCCTCGATCACGTTCCCTTGCTCGGGCCGGAACGGAACCAGATC
AAACGCTTCATCATTATGGTCGATACATTCTACGACCATGCCGTGCGGCTCTACATTTCCGCGGCGGCGATGCCGGAGGA
ACTTTTGCTGCACCGCCGGGGCACCGAGGGGTTTGAATTCGACCGCACGGCATCCCGGCTGTTTGAGATGCGCAGTGCCG
AATATCTTGCGCTGCACCATGAAAAGCGCGCCGCCGAGTAA

Upstream 100 bases:

>100_bases
AGATCAGCCTCAGCCGGTAACAAGTACCGGCGCGGTAAAAGTGCCGGCGCGGTAACGATCCGGCGGGCCCCGCCGATGAC
TGACAGGCGGATATGCCCTC

Downstream 100 bases:

>100_bases
CAATTCGGTGGCAGAATATCTTACGTTTACGTAAGAATTTTTGTATCTAAACGATTGAAAATGCTGCATCAAAAATAATG
GATTGCCATTTTTAGGCTTT

Product: AFG1-family ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MQPMPDYALSVCEQLKSLTLSGALQVDSAQMDVAKSLDRVLAGLKQQRPAAKSSALGWLFAAKKKSAAGIKGLYIHGSVG
RGKTMLMDMFFSMAPCKKKRRAHFHEFMADVHNRIAAHRLKLKNGETKQADPMPPVAAALYEEAELLCFDEFTVTDIADA
MILSRLFAELFARGCVLVATSNVQPDNLYPDGLNRGLFLPFVALLKQHVDVVTLDSPTDYRMEKLSSQPVYLVPINDHND
MAMDASWTQALHGRKAQPLDIPMKGRHIHVPLAVERMARFSFTDLCDKPLGAVDFLAIAERFDTVFLDHVPLLGPERNQI
KRFIIMVDTFYDHAVRLYISAAAMPEELLLHRRGTEGFEFDRTASRLFEMRSAEYLALHHEKRAAE

Sequences:

>Translated_386_residues
MQPMPDYALSVCEQLKSLTLSGALQVDSAQMDVAKSLDRVLAGLKQQRPAAKSSALGWLFAAKKKSAAGIKGLYIHGSVG
RGKTMLMDMFFSMAPCKKKRRAHFHEFMADVHNRIAAHRLKLKNGETKQADPMPPVAAALYEEAELLCFDEFTVTDIADA
MILSRLFAELFARGCVLVATSNVQPDNLYPDGLNRGLFLPFVALLKQHVDVVTLDSPTDYRMEKLSSQPVYLVPINDHND
MAMDASWTQALHGRKAQPLDIPMKGRHIHVPLAVERMARFSFTDLCDKPLGAVDFLAIAERFDTVFLDHVPLLGPERNQI
KRFIIMVDTFYDHAVRLYISAAAMPEELLLHRRGTEGFEFDRTASRLFEMRSAEYLALHHEKRAAE
>Mature_386_residues
MQPMPDYALSVCEQLKSLTLSGALQVDSAQMDVAKSLDRVLAGLKQQRPAAKSSALGWLFAAKKKSAAGIKGLYIHGSVG
RGKTMLMDMFFSMAPCKKKRRAHFHEFMADVHNRIAAHRLKLKNGETKQADPMPPVAAALYEEAELLCFDEFTVTDIADA
MILSRLFAELFARGCVLVATSNVQPDNLYPDGLNRGLFLPFVALLKQHVDVVTLDSPTDYRMEKLSSQPVYLVPINDHND
MAMDASWTQALHGRKAQPLDIPMKGRHIHVPLAVERMARFSFTDLCDKPLGAVDFLAIAERFDTVFLDHVPLLGPERNQI
KRFIIMVDTFYDHAVRLYISAAAMPEELLLHRRGTEGFEFDRTASRLFEMRSAEYLALHHEKRAAE

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=412, Percent_Identity=37.621359223301, Blast_Score=246, Evalue=2e-65,
Organism=Escherichia coli, GI1789627, Length=377, Percent_Identity=36.604774535809, Blast_Score=227, Evalue=1e-60,
Organism=Caenorhabditis elegans, GI17505769, Length=404, Percent_Identity=35.8910891089109, Blast_Score=229, Evalue=2e-60,
Organism=Saccharomyces cerevisiae, GI6320783, Length=350, Percent_Identity=35.4285714285714, Blast_Score=188, Evalue=2e-48,
Organism=Drosophila melanogaster, GI20129913, Length=425, Percent_Identity=35.5294117647059, Blast_Score=216, Evalue=2e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 43329; Mature: 43329

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPMPDYALSVCEQLKSLTLSGALQVDSAQMDVAKSLDRVLAGLKQQRPAAKSSALGWLF
CCCCCHHHHHHHHHHHHHHHHCCEEECHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
AAKKKSAAGIKGLYIHGSVGRGKTMLMDMFFSMAPCKKKRRAHFHEFMADVHNRIAAHRL
HHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
KLKNGETKQADPMPPVAAALYEEAELLCFDEFTVTDIADAMILSRLFAELFARGCVLVAT
HCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCEEEEEE
SNVQPDNLYPDGLNRGLFLPFVALLKQHVDVVTLDSPTDYRMEKLSSQPVYLVPINDHND
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCEEEEEECCCCC
MAMDASWTQALHGRKAQPLDIPMKGRHIHVPLAVERMARFSFTDLCDKPLGAVDFLAIAE
CEECCHHHHHHCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RFDTVFLDHVPLLGPERNQIKRFIIMVDTFYDHAVRLYISAAAMPEELLLHRRGTEGFEF
HHHHHHHHCCCCCCCCHHHHEEEEEEEEHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCH
DRTASRLFEMRSAEYLALHHEKRAAE
HHHHHHHHHHHCCHHHHHHHHHHCCC
>Mature Secondary Structure
MQPMPDYALSVCEQLKSLTLSGALQVDSAQMDVAKSLDRVLAGLKQQRPAAKSSALGWLF
CCCCCHHHHHHHHHHHHHHHHCCEEECHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
AAKKKSAAGIKGLYIHGSVGRGKTMLMDMFFSMAPCKKKRRAHFHEFMADVHNRIAAHRL
HHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
KLKNGETKQADPMPPVAAALYEEAELLCFDEFTVTDIADAMILSRLFAELFARGCVLVAT
HCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCEEEEEE
SNVQPDNLYPDGLNRGLFLPFVALLKQHVDVVTLDSPTDYRMEKLSSQPVYLVPINDHND
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCEEEEEECCCCC
MAMDASWTQALHGRKAQPLDIPMKGRHIHVPLAVERMARFSFTDLCDKPLGAVDFLAIAE
CEECCHHHHHHCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RFDTVFLDHVPLLGPERNQIKRFIIMVDTFYDHAVRLYISAAAMPEELLLHRRGTEGFEF
HHHHHHHHCCCCCCCCHHHHEEEEEEEEHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCH
DRTASRLFEMRSAEYLALHHEKRAAE
HHHHHHHHHHHCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]