BacMap

Definition	Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome.
Accession	NC_011369
Length	4,537,948

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The map label for this gene is ygfF [H]

Identifier: 209551248

GI number: 209551248

Start: 3806108

End: 3806860

Strand: Reverse

Name: ygfF [H]

Synonym: Rleg2_3676

Alternate gene names: 209551248

Gene position: 3806860-3806108 (Counterclockwise)

Preceding gene: 209551249

Following gene: 209551247

Centisome position: 83.89

GC content: 66.27

Gene sequence:

>753_bases
ATGAGCGATAGCCCTGTTGTTCTCGTGACCGGTGGAAGCCGGGGCATCGGCGCCGCCGTCTGCCGCCTCGCCGCGCGCCA
GGGCTGGCGTGTCGCGGTGAATTACGCGTCCAGCCGCAAGGCTGCGGATGCTGTCGTGGCATCGATCGTCGAGCATGGCG
GCGAGGCGGTGGCGATCGAGGGCGATGTCGGCAAGACTGCGGATATCGCCGCGATGTTTGCGGCGGTAGACCGCCATTTC
GGCCGGCTCGACGGTCTCGTCAACAATGCCGGCATCGTCGACTATCCGCAGCGGGTCGATGAGATGTCGGCAGAGCGGAT
CGAGCGCATGCTGCGCGTCAATGTGACCGGCTCCATGCTCTGCGCCGCAGAGGCAATACGTCGGATGTCGAGCCGGCACG
GCGGCCAGGGCGGGGCGATCGTCAACGTCTCGTCGATGGCGGCGATCCTCGGCGCGGCGACGCAATATGTCGATTATGCC
GCCTCGAAGGCGGCGATCGATACGTTCACGGTCGGGCTTTCGCGCGAACTCGCTGCCGAGGGCATTCGCGTGAATGCCGT
CAGGCCCGGCATCATCGAAACCGACCTTCATGCTTCGGGCGGGCTGCCGGACCGGGCGCGGGAAATGGCGCCGTCGGTCC
CGATGCAGCGGGCCGGCACGGCCGAGGAAGTGGCGGATGCGATCATCTATCTTCTTTCCCCTTCGGCTTCCTATATAACC
GGCGCGATCCTCAATGTGAGCGGCGGCCGCTAG

Upstream 100 bases:

>100_bases
TTCCCGGCCTTGGTCCTGCCATCCGCGAATCCAGCGCCTGGGGCGAGGGCAAGGCTTCCGTGGGGCCGTGGGATGTGCTG
ACATTCAAGGAGTGTGCGAC

Downstream 100 bases:

>100_bases
AAGACAGGGCGAGAAACAGCATGCAGTATATTCTCGAATTTCTCGGCCTGATGGCGGTTTTCTCGATCTTCATCGTCGTG
CCGGGGGCCGATTTCGCCGT

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MSDSPVVLVTGGSRGIGAAVCRLAARQGWRVAVNYASSRKAADAVVASIVEHGGEAVAIEGDVGKTADIAAMFAAVDRHF
GRLDGLVNNAGIVDYPQRVDEMSAERIERMLRVNVTGSMLCAAEAIRRMSSRHGGQGGAIVNVSSMAAILGAATQYVDYA
ASKAAIDTFTVGLSRELAAEGIRVNAVRPGIIETDLHASGGLPDRAREMAPSVPMQRAGTAEEVADAIIYLLSPSASYIT
GAILNVSGGR

Sequences:

>Translated_250_residues
MSDSPVVLVTGGSRGIGAAVCRLAARQGWRVAVNYASSRKAADAVVASIVEHGGEAVAIEGDVGKTADIAAMFAAVDRHF
GRLDGLVNNAGIVDYPQRVDEMSAERIERMLRVNVTGSMLCAAEAIRRMSSRHGGQGGAIVNVSSMAAILGAATQYVDYA
ASKAAIDTFTVGLSRELAAEGIRVNAVRPGIIETDLHASGGLPDRAREMAPSVPMQRAGTAEEVADAIIYLLSPSASYIT
GAILNVSGGR
>Mature_249_residues
SDSPVVLVTGGSRGIGAAVCRLAARQGWRVAVNYASSRKAADAVVASIVEHGGEAVAIEGDVGKTADIAAMFAAVDRHFG
RLDGLVNNAGIVDYPQRVDEMSAERIERMLRVNVTGSMLCAAEAIRRMSSRHGGQGGAIVNVSSMAAILGAATQYVDYAA
SKAAIDTFTVGLSRELAAEGIRVNAVRPGIIETDLHASGGLPDRAREMAPSVPMQRAGTAEEVADAIIYLLSPSASYITG
AILNVSGGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=38.6178861788618, Blast_Score=139, Evalue=2e-33,
Organism=Homo sapiens, GI59889578, Length=199, Percent_Identity=35.678391959799, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI5031737, Length=249, Percent_Identity=34.5381526104418, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI32483357, Length=251, Percent_Identity=33.4661354581673, Blast_Score=97, Evalue=9e-21,
Organism=Homo sapiens, GI19923817, Length=256, Percent_Identity=30.078125, Blast_Score=94, Evalue=8e-20,
Organism=Homo sapiens, GI109715829, Length=245, Percent_Identity=32.6530612244898, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI7705925, Length=249, Percent_Identity=34.136546184739, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI15277342, Length=254, Percent_Identity=30.7086614173228, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI31542939, Length=196, Percent_Identity=33.1632653061224, Blast_Score=88, Evalue=9e-18,
Organism=Homo sapiens, GI10190704, Length=249, Percent_Identity=29.718875502008, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI33667109, Length=193, Percent_Identity=35.7512953367876, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI4758504, Length=263, Percent_Identity=30.4182509505703, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI126723750, Length=254, Percent_Identity=27.9527559055118, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI224922801, Length=170, Percent_Identity=32.9411764705882, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI66933014, Length=194, Percent_Identity=28.8659793814433, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=53.469387755102, Blast_Score=262, Evalue=2e-71,
Organism=Escherichia coli, GI1788459, Length=247, Percent_Identity=32.3886639676113, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1789378, Length=245, Percent_Identity=33.0612244897959, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787335, Length=250, Percent_Identity=35.2, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI2367365, Length=243, Percent_Identity=35.3909465020576, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1790717, Length=248, Percent_Identity=29.8387096774194, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1789057, Length=260, Percent_Identity=31.5384615384615, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI87082160, Length=255, Percent_Identity=30.9803921568627, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=32.3886639676113, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87082100, Length=251, Percent_Identity=31.8725099601594, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1786812, Length=200, Percent_Identity=31.5, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1789208, Length=254, Percent_Identity=27.1653543307087, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1787891, Length=244, Percent_Identity=26.6393442622951, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787820, Length=188, Percent_Identity=28.7234042553192, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI115534694, Length=244, Percent_Identity=35.655737704918, Blast_Score=129, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI25147288, Length=244, Percent_Identity=34.4262295081967, Blast_Score=114, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=35.2, Blast_Score=111, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI71994600, Length=256, Percent_Identity=31.25, Blast_Score=103, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI71994604, Length=261, Percent_Identity=32.5670498084291, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17559104, Length=272, Percent_Identity=30.1470588235294, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17538182, Length=253, Percent_Identity=32.0158102766798, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17551412, Length=260, Percent_Identity=31.1538461538462, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17562910, Length=259, Percent_Identity=30.5019305019305, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17562904, Length=271, Percent_Identity=29.520295202952, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17563726, Length=270, Percent_Identity=28.5185185185185, Blast_Score=91, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17538480, Length=260, Percent_Identity=30.7692307692308, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17560150, Length=270, Percent_Identity=28.1481481481481, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI72000259, Length=256, Percent_Identity=28.515625, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI17562990, Length=270, Percent_Identity=27.7777777777778, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17536025, Length=251, Percent_Identity=29.4820717131474, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17565030, Length=274, Percent_Identity=30.2919708029197, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17560676, Length=245, Percent_Identity=26.9387755102041, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=30.7692307692308, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17531453, Length=260, Percent_Identity=30, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17561272, Length=218, Percent_Identity=30.2752293577982, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17544670, Length=267, Percent_Identity=27.3408239700375, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17562906, Length=259, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17536651, Length=252, Percent_Identity=29.3650793650794, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17561402, Length=255, Percent_Identity=27.4509803921569, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=260, Percent_Identity=29.2307692307692, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17560220, Length=275, Percent_Identity=28, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17538486, Length=263, Percent_Identity=27.3764258555133, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17562908, Length=259, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17508651, Length=257, Percent_Identity=28.0155642023346, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17568967, Length=200, Percent_Identity=32.5, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI72001658, Length=214, Percent_Identity=26.6355140186916, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17564282, Length=249, Percent_Identity=26.1044176706827, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=177, Percent_Identity=28.2485875706215, Blast_Score=74, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6322861, Length=256, Percent_Identity=27.34375, Blast_Score=70, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6323882, Length=232, Percent_Identity=29.7413793103448, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322226, Length=195, Percent_Identity=26.6666666666667, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=36.1111111111111, Blast_Score=126, Evalue=1e-29,
Organism=Drosophila melanogaster, GI28571526, Length=257, Percent_Identity=36.9649805447471, Blast_Score=125, Evalue=3e-29,
Organism=Drosophila melanogaster, GI24644339, Length=255, Percent_Identity=35.6862745098039, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI21357041, Length=257, Percent_Identity=35.0194552529183, Blast_Score=115, Evalue=3e-26,
Organism=Drosophila melanogaster, GI24639444, Length=246, Percent_Identity=34.1463414634146, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=32, Blast_Score=98, Evalue=6e-21,
Organism=Drosophila melanogaster, GI24644337, Length=214, Percent_Identity=33.1775700934579, Blast_Score=94, Evalue=9e-20,
Organism=Drosophila melanogaster, GI17737361, Length=263, Percent_Identity=33.0798479087452, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=30.3643724696356, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24648693, Length=251, Percent_Identity=29.4820717131474, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI21355889, Length=251, Percent_Identity=29.4820717131474, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24641232, Length=231, Percent_Identity=27.2727272727273, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24584748, Length=204, Percent_Identity=28.921568627451, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI161076933, Length=204, Percent_Identity=28.921568627451, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI116007236, Length=241, Percent_Identity=28.6307053941909, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI18859837, Length=222, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28571387, Length=236, Percent_Identity=28.8135593220339, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24656154, Length=217, Percent_Identity=29.9539170506912, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI19922628, Length=217, Percent_Identity=29.9539170506912, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24641388, Length=238, Percent_Identity=29.8319327731092, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI281364494, Length=233, Percent_Identity=27.8969957081545, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221331218, Length=252, Percent_Identity=26.984126984127, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24665243, Length=252, Percent_Identity=26.984126984127, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21355631, Length=172, Percent_Identity=27.906976744186, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI221331216, Length=253, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24665247, Length=253, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25853; Mature: 25722

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSPVVLVTGGSRGIGAAVCRLAARQGWRVAVNYASSRKAADAVVASIVEHGGEAVAIE
CCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEE
GDVGKTADIAAMFAAVDRHFGRLDGLVNNAGIVDYPQRVDEMSAERIERMLRVNVTGSML
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHH
CAAEAIRRMSSRHGGQGGAIVNVSSMAAILGAATQYVDYAASKAAIDTFTVGLSRELAAE
HHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GIRVNAVRPGIIETDLHASGGLPDRAREMAPSVPMQRAGTAEEVADAIIYLLSPSASYIT
CEEEEEECCCEEEECCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHE
GAILNVSGGR
EEEEECCCCC
>Mature Secondary Structure 
SDSPVVLVTGGSRGIGAAVCRLAARQGWRVAVNYASSRKAADAVVASIVEHGGEAVAIE
CCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEE
GDVGKTADIAAMFAAVDRHFGRLDGLVNNAGIVDYPQRVDEMSAERIERMLRVNVTGSML
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHH
CAAEAIRRMSSRHGGQGGAIVNVSSMAAILGAATQYVDYAASKAAIDTFTVGLSRELAAE
HHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GIRVNAVRPGIIETDLHASGGLPDRAREMAPSVPMQRAGTAEEVADAIIYLLSPSASYIT
CEEEEEECCCEEEECCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHE
GAILNVSGGR
EEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 7764507 [H]