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The map label for this gene is ycjO [C]

Identifier: 209551240

GI number: 209551240

Start: 3796617

End: 3797516

Strand: Reverse

Name: ycjO [C]

Synonym: Rleg2_3668

Alternate gene names: 209551240

Gene position: 3797516-3796617 (Counterclockwise)

Preceding gene: 209551241

Following gene: 209551239

Centisome position: 83.68

GC content: 57.89

Gene sequence:

>900_bases
GTGCTGCGAAAGATTTGGGAGCATCGGGCCGACTACGCCTATGTGCTTCCTGCGATCGCCGTGATGCTCATCGTCATAGC
CTATCCTATCTACTACACGATCGAGCTGTCGTTCTTCAACACACCACCTGGCCTGCAGCTGCGGGACAAGATTTTCATCG
GCTTCGACAACTACGTCTCCATCCTCACAAGTCCGGTTTTCTGGAAGGTCACCTCGAACACACTTATTTGGACAGTGGGA
TCGACGTTCATCTCATTTGTCCTGGGGTTTGGCTGCGCCCTGGCGCTCCATCGTGACTTTGTCGGCCGTGGCATCCTGCG
CGCCGTCCTGATCATTCCCTGGGTCATCAGCGCGGTCGCCGCGTCCTATATCTGGAAGTGGATCTACCATTCGGACTTCG
GGATCATCGGCGCGGTGCTTGTCGGTCTCGGATGGGCCGACCGGCCGCCGAATTTCATCGACAGCGTCAGCACGGTGCTG
CCCTCGCTGATCGTCGTCAATATCTGGCGAGAGTTTCCGTTTGCCATGATCATGATGATGGCTGGCCTGCAGACGGTTCC
CGACCAGTTGCTGCGCGCCGCAAAAGTCGACGGAGCCAATGCATGGCAGCGGTTCTGGCACGTCACCTTTCCGCATTTGA
GAAACGTCTCGACGGTGACGATCCTTCTGCTGGCAGTGGCGAACTTCAATTCTTTCATCATTCCCTGGATCATGACCGGC
GGCGGGCCGTCGAACGCATCGCATATCTGGATCACCCACATTTATGAACTCGCCTTCGGCCGCCAGCGCTGGGGCGTGGC
ATCGGCCTATTCGGTGCTGCTGTTCCTGATCCTGATGTCGCTCGGCTACTTCTACGTCCGTGCGCTGAGCGGCAACGAGC
AGAAGGACGGGAGCGAATGA

Upstream 100 bases:

>100_bases
ACTGCAGCCGGTCTGTTCCGAAGAACAAGGGCGCGGCATAGTGACGATCTTGACTGGCAAGGCCGAGGCTCTCCGAAGAC
CGCAACCCGATAGGTCCGGC

Downstream 100 bases:

>100_bases
GCACGATTGCCGAGACGGCTCATCGAGGCCAGGCGCGTCGCCGTATGCGCATCGATGGATGGCGGTGGGGCGGACGCATC
TTCCTTGTGTTCATGCTGCT

Product: binding-protein-dependent transporters inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MLRKIWEHRADYAYVLPAIAVMLIVIAYPIYYTIELSFFNTPPGLQLRDKIFIGFDNYVSILTSPVFWKVTSNTLIWTVG
STFISFVLGFGCALALHRDFVGRGILRAVLIIPWVISAVAASYIWKWIYHSDFGIIGAVLVGLGWADRPPNFIDSVSTVL
PSLIVVNIWREFPFAMIMMMAGLQTVPDQLLRAAKVDGANAWQRFWHVTFPHLRNVSTVTILLLAVANFNSFIIPWIMTG
GGPSNASHIWITHIYELAFGRQRWGVASAYSVLLFLILMSLGYFYVRALSGNEQKDGSE

Sequences:

>Translated_299_residues
MLRKIWEHRADYAYVLPAIAVMLIVIAYPIYYTIELSFFNTPPGLQLRDKIFIGFDNYVSILTSPVFWKVTSNTLIWTVG
STFISFVLGFGCALALHRDFVGRGILRAVLIIPWVISAVAASYIWKWIYHSDFGIIGAVLVGLGWADRPPNFIDSVSTVL
PSLIVVNIWREFPFAMIMMMAGLQTVPDQLLRAAKVDGANAWQRFWHVTFPHLRNVSTVTILLLAVANFNSFIIPWIMTG
GGPSNASHIWITHIYELAFGRQRWGVASAYSVLLFLILMSLGYFYVRALSGNEQKDGSE
>Mature_299_residues
MLRKIWEHRADYAYVLPAIAVMLIVIAYPIYYTIELSFFNTPPGLQLRDKIFIGFDNYVSILTSPVFWKVTSNTLIWTVG
STFISFVLGFGCALALHRDFVGRGILRAVLIIPWVISAVAASYIWKWIYHSDFGIIGAVLVGLGWADRPPNFIDSVSTVL
PSLIVVNIWREFPFAMIMMMAGLQTVPDQLLRAAKVDGANAWQRFWHVTFPHLRNVSTVTILLLAVANFNSFIIPWIMTG
GGPSNASHIWITHIYELAFGRQRWGVASAYSVLLFLILMSLGYFYVRALSGNEQKDGSE

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=271, Percent_Identity=30.6273062730627, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1790465, Length=253, Percent_Identity=28.4584980237154, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1789861, Length=237, Percent_Identity=24.0506329113924, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33701; Mature: 33701

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRKIWEHRADYAYVLPAIAVMLIVIAYPIYYTIELSFFNTPPGLQLRDKIFIGFDNYVS
CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCEECEEEECHHHHHH
ILTSPVFWKVTSNTLIWTVGSTFISFVLGFGCALALHRDFVGRGILRAVLIIPWVISAVA
HHCCCEEEEEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASYIWKWIYHSDFGIIGAVLVGLGWADRPPNFIDSVSTVLPSLIVVNIWREFPFAMIMMM
HHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGLQTVPDQLLRAAKVDGANAWQRFWHVTFPHLRNVSTVTILLLAVANFNSFIIPWIMTG
HCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHCCHHHHHHHHHHHHCCCCEEEEEEEEC
GGPSNASHIWITHIYELAFGRQRWGVASAYSVLLFLILMSLGYFYVRALSGNEQKDGSE
CCCCCCCEEHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLRKIWEHRADYAYVLPAIAVMLIVIAYPIYYTIELSFFNTPPGLQLRDKIFIGFDNYVS
CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCEECEEEECHHHHHH
ILTSPVFWKVTSNTLIWTVGSTFISFVLGFGCALALHRDFVGRGILRAVLIIPWVISAVA
HHCCCEEEEEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASYIWKWIYHSDFGIIGAVLVGLGWADRPPNFIDSVSTVLPSLIVVNIWREFPFAMIMMM
HHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGLQTVPDQLLRAAKVDGANAWQRFWHVTFPHLRNVSTVTILLLAVANFNSFIIPWIMTG
HCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHCCHHHHHHHHHHHHCCCCEEEEEEEEC
GGPSNASHIWITHIYELAFGRQRWGVASAYSVLLFLILMSLGYFYVRALSGNEQKDGSE
CCCCCCCEEHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA