The gene/protein map for NC_011369 is currently unavailable.
Definition Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome.
Accession NC_011369
Length 4,537,948

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The map label for this gene is ygcW [C]

Identifier: 209551061

GI number: 209551061

Start: 3600935

End: 3601756

Strand: Direct

Name: ygcW [C]

Synonym: Rleg2_3485

Alternate gene names: 209551061

Gene position: 3600935-3601756 (Clockwise)

Preceding gene: 209551060

Following gene: 209551062

Centisome position: 79.35

GC content: 65.57

Gene sequence:

>822_bases
ATGAGCACGGATCACGGCCGCCTCGACGGCAAGATCGCCATCGTCACCGGCGGCACCCAGGGGTTGGGCGCCACCATCGC
CCGTCTCTTCGCCGAACGCGGTGCCGAAGGCATCGTCATTTGCGGCCGCAACGAAGCCAAGGGCCAGGCGAAGGCCAATG
AGATTTCGGCCGCGACCGGCGTGAAGGTCGTCTACGTCAGGGCCGACCTCGGCAAGGTCGAGGACGCCAGCAATGTCGTC
CACGCCTGCGATGAGGCCTTCGGCCGGGTCGACGCGCTGGTCAATGCCGCTGCCATCACCGATCGCGGCACCATCCTCGA
CACCAGCCCTGAACTCTTCGACGCCATGTTCGCCGTCAACGTGCGCGCACCGTTCTTCCTGATGCAGGAGGCGGTGAAGG
TCATGCGCCGCGAAAAGATCGAGGGCACGATCGTCAACATCGGCTCGATGTCGGCCAAGGCAGGCCAGCCGTTCATCGCC
GCCTATTGCGCCTCCAAGGGCGCGCTGGAAACGCTGACGAAGAACACAGCCTATGCGCTGCTGCGCAACCGCATCCGCGT
CAACGGCCTCAACATCGGCTGGATGGCTTCCGAAGGTGAGGATCGGATCCAGCGCGAATTTCACGACGCCCCCGCCGACT
GGCTGGAGAAGGCGGCAGCAAGCCAACCCTTCGGCCGCCTCGTCGATCCGCACGAGGTGGCGCGCGCCTGCGCCTATCTG
TCGTCTGCCGAATCCGGCCTGATGACCGGCTCGGTCATTTGCTTCGACCAGTCGATCTGGGGCGCCTATGACGGCTCGCC
GCATCCGGTGGCGGCACTCTGA

Upstream 100 bases:

>100_bases
AGCTGAGCTGACTAAGGATCTTGAGCCGACCCCGCACTGACATTAAAGCCTCCCGCACCCGCGGGAGGCCATTCGCATAT
CACCACTAAGGAGGAATCAC

Downstream 100 bases:

>100_bases
TCAGTCTTGAGCCCGGCATTTCCCAGAGCCGGGCTCTGGCACCTCCCAGGATTTGCCGCTAGGAAGATGCGGCAGCATTC
AGGGAGAAATTGGCGTGGCC

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MSTDHGRLDGKIAIVTGGTQGLGATIARLFAERGAEGIVICGRNEAKGQAKANEISAATGVKVVYVRADLGKVEDASNVV
HACDEAFGRVDALVNAAAITDRGTILDTSPELFDAMFAVNVRAPFFLMQEAVKVMRREKIEGTIVNIGSMSAKAGQPFIA
AYCASKGALETLTKNTAYALLRNRIRVNGLNIGWMASEGEDRIQREFHDAPADWLEKAAASQPFGRLVDPHEVARACAYL
SSAESGLMTGSVICFDQSIWGAYDGSPHPVAAL

Sequences:

>Translated_273_residues
MSTDHGRLDGKIAIVTGGTQGLGATIARLFAERGAEGIVICGRNEAKGQAKANEISAATGVKVVYVRADLGKVEDASNVV
HACDEAFGRVDALVNAAAITDRGTILDTSPELFDAMFAVNVRAPFFLMQEAVKVMRREKIEGTIVNIGSMSAKAGQPFIA
AYCASKGALETLTKNTAYALLRNRIRVNGLNIGWMASEGEDRIQREFHDAPADWLEKAAASQPFGRLVDPHEVARACAYL
SSAESGLMTGSVICFDQSIWGAYDGSPHPVAAL
>Mature_272_residues
STDHGRLDGKIAIVTGGTQGLGATIARLFAERGAEGIVICGRNEAKGQAKANEISAATGVKVVYVRADLGKVEDASNVVH
ACDEAFGRVDALVNAAAITDRGTILDTSPELFDAMFAVNVRAPFFLMQEAVKVMRREKIEGTIVNIGSMSAKAGQPFIAA
YCASKGALETLTKNTAYALLRNRIRVNGLNIGWMASEGEDRIQREFHDAPADWLEKAAASQPFGRLVDPHEVARACAYLS
SAESGLMTGSVICFDQSIWGAYDGSPHPVAAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=257, Percent_Identity=29.1828793774319, Blast_Score=92, Evalue=3e-19,
Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=28.8617886178862, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI15277342, Length=257, Percent_Identity=28.0155642023346, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI7705925, Length=259, Percent_Identity=29.7297297297297, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI5031737, Length=249, Percent_Identity=28.5140562248996, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI66933014, Length=256, Percent_Identity=30.078125, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI20149619, Length=193, Percent_Identity=31.6062176165803, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI59889578, Length=226, Percent_Identity=28.7610619469027, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI109715829, Length=253, Percent_Identity=29.2490118577075, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI33667109, Length=184, Percent_Identity=33.1521739130435, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI10190704, Length=261, Percent_Identity=28.3524904214559, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=31.1827956989247, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI19923817, Length=264, Percent_Identity=25, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI4504505, Length=187, Percent_Identity=32.0855614973262, Blast_Score=69, Evalue=5e-12,
Organism=Escherichia coli, GI87082160, Length=263, Percent_Identity=32.319391634981, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI87082100, Length=253, Percent_Identity=31.2252964426877, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=29.718875502008, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1788459, Length=248, Percent_Identity=29.0322580645161, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=28.5140562248996, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1789378, Length=260, Percent_Identity=30.3846153846154, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787335, Length=253, Percent_Identity=28.8537549407115, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI2367175, Length=248, Percent_Identity=30.6451612903226, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786812, Length=262, Percent_Identity=29.3893129770992, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1789057, Length=184, Percent_Identity=32.0652173913043, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787905, Length=261, Percent_Identity=28.735632183908, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787526, Length=189, Percent_Identity=29.1005291005291, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI2367365, Length=255, Percent_Identity=27.4509803921569, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=247, Percent_Identity=31.9838056680162, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=31.6, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI193204405, Length=252, Percent_Identity=30.5555555555556, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17561402, Length=257, Percent_Identity=31.9066147859922, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=29.6153846153846, Blast_Score=98, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17531453, Length=260, Percent_Identity=30.3846153846154, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17536025, Length=252, Percent_Identity=30.5555555555556, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17562908, Length=261, Percent_Identity=29.8850574712644, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17562910, Length=271, Percent_Identity=30.2583025830258, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17560220, Length=195, Percent_Identity=31.7948717948718, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17560150, Length=246, Percent_Identity=28.8617886178862, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI115534694, Length=256, Percent_Identity=29.296875, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17536651, Length=252, Percent_Identity=29.3650793650794, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17559104, Length=249, Percent_Identity=31.3253012048193, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17562990, Length=243, Percent_Identity=29.2181069958848, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=30.4182509505703, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17560676, Length=252, Percent_Identity=28.968253968254, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=29.3233082706767, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17551412, Length=255, Percent_Identity=28.6274509803922, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17563726, Length=245, Percent_Identity=26.9387755102041, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17561272, Length=262, Percent_Identity=28.6259541984733, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17538480, Length=253, Percent_Identity=27.6679841897233, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17564282, Length=159, Percent_Identity=33.9622641509434, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI25147288, Length=247, Percent_Identity=26.3157894736842, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=249, Percent_Identity=28.5140562248996, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=26.4, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=198, Percent_Identity=29.7979797979798, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17568967, Length=192, Percent_Identity=31.25, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17538182, Length=261, Percent_Identity=26.0536398467433, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193203117, Length=160, Percent_Identity=31.25, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193203115, Length=157, Percent_Identity=31.8471337579618, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17508895, Length=160, Percent_Identity=33.125, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17508651, Length=240, Percent_Identity=25.4166666666667, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=268, Percent_Identity=26.865671641791, Blast_Score=75, Evalue=1e-14,
Organism=Drosophila melanogaster, GI23397609, Length=265, Percent_Identity=32.8301886792453, Blast_Score=119, Evalue=3e-27,
Organism=Drosophila melanogaster, GI21357041, Length=246, Percent_Identity=34.5528455284553, Blast_Score=119, Evalue=3e-27,
Organism=Drosophila melanogaster, GI28571526, Length=246, Percent_Identity=34.5528455284553, Blast_Score=117, Evalue=9e-27,
Organism=Drosophila melanogaster, GI24644339, Length=249, Percent_Identity=31.3253012048193, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI21355319, Length=248, Percent_Identity=31.0483870967742, Blast_Score=98, Evalue=6e-21,
Organism=Drosophila melanogaster, GI24639444, Length=257, Percent_Identity=29.5719844357977, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI18859837, Length=198, Percent_Identity=33.3333333333333, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24643142, Length=260, Percent_Identity=28.0769230769231, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24644337, Length=250, Percent_Identity=28, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI161076933, Length=180, Percent_Identity=31.6666666666667, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24584748, Length=180, Percent_Identity=31.6666666666667, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI17737361, Length=257, Percent_Identity=28.0155642023346, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28988; Mature: 28857

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MSTDHGRLDGKIAIVTGGTQGLGATIARLFAERGAEGIVICGRNEAKGQAKANEISAATG
CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHCCC
VKVVYVRADLGKVEDASNVVHACDEAFGRVDALVNAAAITDRGTILDTSPELFDAMFAVN
EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHC
VRAPFFLMQEAVKVMRREKIEGTIVNIGSMSAKAGQPFIAAYCASKGALETLTKNTAYAL
CCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEHHHCCCHHHHHHHHHHHHH
LRNRIRVNGLNIGWMASEGEDRIQREFHDAPADWLEKAAASQPFGRLVDPHEVARACAYL
HHCCEEECCEEEEEECCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
SSAESGLMTGSVICFDQSIWGAYDGSPHPVAAL
HHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
STDHGRLDGKIAIVTGGTQGLGATIARLFAERGAEGIVICGRNEAKGQAKANEISAATG
CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHCCC
VKVVYVRADLGKVEDASNVVHACDEAFGRVDALVNAAAITDRGTILDTSPELFDAMFAVN
EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHC
VRAPFFLMQEAVKVMRREKIEGTIVNIGSMSAKAGQPFIAAYCASKGALETLTKNTAYAL
CCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEHHHCCCHHHHHHHHHHHHH
LRNRIRVNGLNIGWMASEGEDRIQREFHDAPADWLEKAAASQPFGRLVDPHEVARACAYL
HHCCEEECCEEEEEECCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
SSAESGLMTGSVICFDQSIWGAYDGSPHPVAAL
HHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]