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The map label for this gene is araH [H]

Identifier: 209551051

GI number: 209551051

Start: 3590199

End: 3591149

Strand: Reverse

Name: araH [H]

Synonym: Rleg2_3475

Alternate gene names: 209551051

Gene position: 3591149-3590199 (Counterclockwise)

Preceding gene: 209551052

Following gene: 209551050

Centisome position: 79.14

GC content: 61.3

Gene sequence:

>951_bases
ATGAATTCGTTGAAAAAAATCCTTCTCGGCGAACAGGGGTTGGTGGTGATCTTCGCCGCTGCCTTCGTGATCGTCTCGCT
CTTCGTGCCGAATTTCCTGACCGAGCGAAACATGCTGGGGCTGCTGCAGTCGGTGGTCACCATCGGTATCGTCGCCTGCA
CGATGATGTTCTGCCTGGCGTCGCGCGATTTCGATCTTTCGGTCGGGTCGATCGTCGCCTTCTCCGGCATGATCGCCGTG
ATGGTCTCGAACGCCACGGGCTCCATCCCTCTCGGTTTGCTCGCCGCCCTGCTGTGCGGCGCCGTCGTCGGCTTCGTCAA
CGGCATCGTCATCGCCCGGTTCCGCATCAACGCGCTGATCACGACGCTTGCGACCATGCAGATCGTGCGCGGGCTGGCGC
TGATCGCCTCGGATGGCCGTGCCGTCGGCATCAACGATCCGGCCTTTTATCAGCTGGCCCTGTCGCGCTTTCTGACAGTG
CCGACGCCGATCTGGATCATGCTGATGCTCTTCGTCCTTTTCGGTTTCGTGCTCAACCGCACCGTCTTCGGCAAGAACAC
GCTGGCGATCGGCGGCAATCCCGAAGCCTCGCGGCTTGCCGGCGTCAATGTCGTCAACATGCGCATCTGGATCTTTGCAC
TGCAGGGGCTCGTCTGCGGCATTGCCGGCATCCTGCTTGCCTCGCGCATCACCTCCGGCCAGCCGAATGCGGCGACGGGA
CTTGAGCTGTCGGTGATTTCGGCCTGCGTTCTCGGCGGCGTTTCGCTGGCCGGCGGCAGGGCGGCGATGAGCGGCGTCAT
CGTCGGCGTGCTGATCATGGGCATTGCCGAAAACGTTATGAATCTCTTGAATATCCAGGCATTCTATCAGTATGTCGTGC
GCGGGCTGATCCTGCTGATTGCCGTGCTGCTCGACAATTTGCGATCTTCGGCTGCGGGACGACGGGGATGA

Upstream 100 bases:

>100_bases
CCAATGTCGCCCGCCAGGATTTCGACGAGCGCGCCATCCTCACCGCTGCGCTCCCCGATAAGAATGCCGCAGGCAGCATT
TAGCACCAGGAATACGGATA

Downstream 100 bases:

>100_bases
GTGAAGGACAGACCGGACGCGATATCGAACTGAGGCAAGGCGATCTCGCCGTCCGGGTCAGCCCTCGGGGCGCCGCGGTT
ACCGCCGCGACGTTTCGAGG

Product: L-arabinose transporter permease

Products: ADP; phosphate; arabinose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MNSLKKILLGEQGLVVIFAAAFVIVSLFVPNFLTERNMLGLLQSVVTIGIVACTMMFCLASRDFDLSVGSIVAFSGMIAV
MVSNATGSIPLGLLAALLCGAVVGFVNGIVIARFRINALITTLATMQIVRGLALIASDGRAVGINDPAFYQLALSRFLTV
PTPIWIMLMLFVLFGFVLNRTVFGKNTLAIGGNPEASRLAGVNVVNMRIWIFALQGLVCGIAGILLASRITSGQPNAATG
LELSVISACVLGGVSLAGGRAAMSGVIVGVLIMGIAENVMNLLNIQAFYQYVVRGLILLIAVLLDNLRSSAAGRRG

Sequences:

>Translated_316_residues
MNSLKKILLGEQGLVVIFAAAFVIVSLFVPNFLTERNMLGLLQSVVTIGIVACTMMFCLASRDFDLSVGSIVAFSGMIAV
MVSNATGSIPLGLLAALLCGAVVGFVNGIVIARFRINALITTLATMQIVRGLALIASDGRAVGINDPAFYQLALSRFLTV
PTPIWIMLMLFVLFGFVLNRTVFGKNTLAIGGNPEASRLAGVNVVNMRIWIFALQGLVCGIAGILLASRITSGQPNAATG
LELSVISACVLGGVSLAGGRAAMSGVIVGVLIMGIAENVMNLLNIQAFYQYVVRGLILLIAVLLDNLRSSAAGRRG
>Mature_316_residues
MNSLKKILLGEQGLVVIFAAAFVIVSLFVPNFLTERNMLGLLQSVVTIGIVACTMMFCLASRDFDLSVGSIVAFSGMIAV
MVSNATGSIPLGLLAALLCGAVVGFVNGIVIARFRINALITTLATMQIVRGLALIASDGRAVGINDPAFYQLALSRFLTV
PTPIWIMLMLFVLFGFVLNRTVFGKNTLAIGGNPEASRLAGVNVVNMRIWIFALQGLVCGIAGILLASRITSGQPNAATG
LELSVISACVLGGVSLAGGRAAMSGVIVGVLIMGIAENVMNLLNIQAFYQYVVRGLILLIAVLLDNLRSSAAGRRG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693152, Length=301, Percent_Identity=57.4750830564784, Blast_Score=316, Evalue=2e-87,
Organism=Escherichia coli, GI1790191, Length=308, Percent_Identity=37.3376623376623, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI1788896, Length=318, Percent_Identity=37.7358490566038, Blast_Score=177, Evalue=5e-46,
Organism=Escherichia coli, GI1789992, Length=346, Percent_Identity=32.6589595375723, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI1790524, Length=290, Percent_Identity=32.0689655172414, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1787793, Length=263, Percent_Identity=33.8403041825095, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI87082395, Length=301, Percent_Identity=30.2325581395349, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1788471, Length=336, Percent_Identity=33.9285714285714, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI145693214, Length=235, Percent_Identity=32.3404255319149, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787794, Length=279, Percent_Identity=26.1648745519713, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33076; Mature: 33076

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSLKKILLGEQGLVVIFAAAFVIVSLFVPNFLTERNMLGLLQSVVTIGIVACTMMFCLA
CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRDFDLSVGSIVAFSGMIAVMVSNATGSIPLGLLAALLCGAVVGFVNGIVIARFRINALI
CCCCCCCHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TTLATMQIVRGLALIASDGRAVGINDPAFYQLALSRFLTVPTPIWIMLMLFVLFGFVLNR
HHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
TVFGKNTLAIGGNPEASRLAGVNVVNMRIWIFALQGLVCGIAGILLASRITSGQPNAATG
HHCCCCEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
LELSVISACVLGGVSLAGGRAAMSGVIVGVLIMGIAENVMNLLNIQAFYQYVVRGLILLI
CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVLLDNLRSSAAGRRG
HHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNSLKKILLGEQGLVVIFAAAFVIVSLFVPNFLTERNMLGLLQSVVTIGIVACTMMFCLA
CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRDFDLSVGSIVAFSGMIAVMVSNATGSIPLGLLAALLCGAVVGFVNGIVIARFRINALI
CCCCCCCHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TTLATMQIVRGLALIASDGRAVGINDPAFYQLALSRFLTVPTPIWIMLMLFVLFGFVLNR
HHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
TVFGKNTLAIGGNPEASRLAGVNVVNMRIWIFALQGLVCGIAGILLASRITSGQPNAATG
HHCCCCEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
LELSVISACVLGGVSLAGGRAAMSGVIVGVLIMGIAENVMNLLNIQAFYQYVVRGLILLI
CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVLLDNLRSSAAGRRG
HHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; arabinose [Periplasm]; H2O [C]

Specific reaction: ATP + arabinose [Periplasm] + H2O = ADP + phosphate + arabinose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2445996; 9097040; 9278503; 8045430 [H]