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The map label for this gene is rbsC [H]

Identifier: 209550984

GI number: 209550984

Start: 3521050

End: 3522054

Strand: Reverse

Name: rbsC [H]

Synonym: Rleg2_3408

Alternate gene names: 209550984

Gene position: 3522054-3521050 (Counterclockwise)

Preceding gene: 209550985

Following gene: 209550983

Centisome position: 77.61

GC content: 62.69

Gene sequence:

>1005_bases
ATGAGTGTCAACGAGGAGACCAGGGAAATCCGGCGCCGATCCTGGCGGGATGTCGATCTGCGTGCGGTCGCGCCTTTCGT
CGCCCTGGCGCTGCTTCTGATCGTCGGAGCCCTGGTCAATCCCAATTTCATCGGCATCACCAACCTTGCCAATGTCGCGA
CGCGCAGCGCCTTCATCGCCATCATCGCGGTCGGCGCGACCTTCGTGATCTCGGCCGGTGATCTCGACCTGTCGGTGGGT
TCGATGGTGGCCTTCGTCGCCAGCCTGATGATCCTGCTGATGAATTCGGGCGCCATCGAAAATCCTGCTTTGATGCTGAC
GGTCGCAGTCGTCTTCACGCTGGTCGCCGGCGCGCTTTGCGGCCTGGCGAATGGCCTGATCACTACGGTGGGCAAGATCG
AGCCGTTCATCGCGACGCTCGGCACGATGGGCATCTATCGCGGCCTGACGACATGGCTGTCGCAGGGCGGCGCGATCACG
CTTCGCTCCGCCGACATCCAGACGCTCTATCGTCCCGCTTATTTTGGCACGATCGCCGGCGTGCCGATCCCGATCGTGGT
GATCCTGGCAGTGACGGCGGTTGCGGCCTTCATTCTCTATCGCACCCGCTATGGGCGCCATGTCGTCGCTGTCGGGTCGA
ACAGCGATGTCGCCCGCTATTCCGGCATCGCAGTCAACCGCGTCAGGACGATCGCCTTCGTTATCCAGGGGCTGTGCGTC
GCCATTGCCGTGCTGCTCTATGTTCCCCGTCTCGGCTCGACCTCGGCGACGACAGGTATCCTGTGGGAACTGCAGGCGAT
CACGGCGGTCGTAGTCGGCGGCACGGCGCTGAAGGGCGGCGCCGGCCGGGTCTGGGGCACGATCTGCGGCGCCTTCATTC
TCGAACTCGTCGGCAACATCATGCTGCTTTCGAATTTCATCAGCGAGTATCTGATCGGCGCCATCCAGGGTGCGATCATC
ATCATCGCCATGTTCGTCCAGCGCTCGCTGGTGCGCAAATCATGA

Upstream 100 bases:

>100_bases
ATGCGTTACGCCGCCGGGCTGAAGAGGAAAGCGGCGGCCTGAGGGCTGAAGCGGACAGATAAGATGCCCAGAAAGAATGG
GCGGGAGGTTGGTTTTGGAA

Downstream 100 bases:

>100_bases
ATTGCTCCGGTTTGCATTGATCGGGCTCAGGATTGACCGGACTTACAGGGCGTCCGGTCCCGATATGGAAAAGTCCCTGC
AATTATTGGGAGGAAATGGC

Product: Monosaccharide-transporting ATPase

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MSVNEETREIRRRSWRDVDLRAVAPFVALALLLIVGALVNPNFIGITNLANVATRSAFIAIIAVGATFVISAGDLDLSVG
SMVAFVASLMILLMNSGAIENPALMLTVAVVFTLVAGALCGLANGLITTVGKIEPFIATLGTMGIYRGLTTWLSQGGAIT
LRSADIQTLYRPAYFGTIAGVPIPIVVILAVTAVAAFILYRTRYGRHVVAVGSNSDVARYSGIAVNRVRTIAFVIQGLCV
AIAVLLYVPRLGSTSATTGILWELQAITAVVVGGTALKGGAGRVWGTICGAFILELVGNIMLLSNFISEYLIGAIQGAII
IIAMFVQRSLVRKS

Sequences:

>Translated_334_residues
MSVNEETREIRRRSWRDVDLRAVAPFVALALLLIVGALVNPNFIGITNLANVATRSAFIAIIAVGATFVISAGDLDLSVG
SMVAFVASLMILLMNSGAIENPALMLTVAVVFTLVAGALCGLANGLITTVGKIEPFIATLGTMGIYRGLTTWLSQGGAIT
LRSADIQTLYRPAYFGTIAGVPIPIVVILAVTAVAAFILYRTRYGRHVVAVGSNSDVARYSGIAVNRVRTIAFVIQGLCV
AIAVLLYVPRLGSTSATTGILWELQAITAVVVGGTALKGGAGRVWGTICGAFILELVGNIMLLSNFISEYLIGAIQGAII
IIAMFVQRSLVRKS
>Mature_333_residues
SVNEETREIRRRSWRDVDLRAVAPFVALALLLIVGALVNPNFIGITNLANVATRSAFIAIIAVGATFVISAGDLDLSVGS
MVAFVASLMILLMNSGAIENPALMLTVAVVFTLVAGALCGLANGLITTVGKIEPFIATLGTMGIYRGLTTWLSQGGAITL
RSADIQTLYRPAYFGTIAGVPIPIVVILAVTAVAAFILYRTRYGRHVVAVGSNSDVARYSGIAVNRVRTIAFVIQGLCVA
IAVLLYVPRLGSTSATTGILWELQAITAVVVGGTALKGGAGRVWGTICGAFILELVGNIMLLSNFISEYLIGAIQGAIII
IAMFVQRSLVRKS

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=318, Percent_Identity=34.2767295597484, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1788896, Length=331, Percent_Identity=30.8157099697885, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI145693152, Length=302, Percent_Identity=33.7748344370861, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1790524, Length=331, Percent_Identity=28.0966767371601, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1789992, Length=365, Percent_Identity=31.2328767123288, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI145693214, Length=262, Percent_Identity=32.4427480916031, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI87082395, Length=294, Percent_Identity=30.952380952381, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787793, Length=266, Percent_Identity=31.5789473684211, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787794, Length=275, Percent_Identity=31.2727272727273, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788471, Length=253, Percent_Identity=30.8300395256917, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35069; Mature: 34938

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVNEETREIRRRSWRDVDLRAVAPFVALALLLIVGALVNPNFIGITNLANVATRSAFIA
CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHH
IIAVGATFVISAGDLDLSVGSMVAFVASLMILLMNSGAIENPALMLTVAVVFTLVAGALC
HHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
GLANGLITTVGKIEPFIATLGTMGIYRGLTTWLSQGGAITLRSADIQTLYRPAYFGTIAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCC
VPIPIVVILAVTAVAAFILYRTRYGRHVVAVGSNSDVARYSGIAVNRVRTIAFVIQGLCV
CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHH
AIAVLLYVPRLGSTSATTGILWELQAITAVVVGGTALKGGAGRVWGTICGAFILELVGNI
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHH
MLLSNFISEYLIGAIQGAIIIIAMFVQRSLVRKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SVNEETREIRRRSWRDVDLRAVAPFVALALLLIVGALVNPNFIGITNLANVATRSAFIA
CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHH
IIAVGATFVISAGDLDLSVGSMVAFVASLMILLMNSGAIENPALMLTVAVVFTLVAGALC
HHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
GLANGLITTVGKIEPFIATLGTMGIYRGLTTWLSQGGAITLRSADIQTLYRPAYFGTIAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCC
VPIPIVVILAVTAVAAFILYRTRYGRHVVAVGSNSDVARYSGIAVNRVRTIAFVIQGLCV
CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHH
AIAVLLYVPRLGSTSATTGILWELQAITAVVVGGTALKGGAGRVWGTICGAFILELVGNI
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHH
MLLSNFISEYLIGAIQGAIIIIAMFVQRSLVRKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]