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The map label for this gene is ydaM [H]

Identifier: 209550625

GI number: 209550625

Start: 3110297

End: 3111160

Strand: Reverse

Name: ydaM [H]

Synonym: Rleg2_3049

Alternate gene names: 209550625

Gene position: 3111160-3110297 (Counterclockwise)

Preceding gene: 209550626

Following gene: 209550624

Centisome position: 68.56

GC content: 62.15

Gene sequence:

>864_bases
ATGAGAAACTGGATGTCGCTGCAGGCCGATTTCGGCAATTTTCAATATCGCGGGAACGTCTATGTCTTTGCGTTGAAGAT
GAGCTTTCTGACGGTCCTTCTCTCCGGCGTCATCATGGCGGTGACGATACCGCCGCTCGGTTTTCTCGGGCTGCTGCCGG
AGACGCTCTCGCACGCGATCGGCTTCGGCGTCATTTTTTCCTGGCTCGTCGGTGGCACGGTTTCCGGCATGCTGTCGCTG
GCCGCCGGTTTTGCCCTGCACGAACTGACGCTGTCGCGGGCGGAGTTCGAAAAGCTCAGCCGCACGGACACGCTTTCGGG
ACTGTTGAACCGGCGCGCTTTCACAGAGGCGCTCGAGAACACCGAAGGCGACGCCTCACTTGTTATTTTCGATGTCGACC
GCTTCAAGGCGATCAACGATCGCTTTGGCCATGGTTGCGGCGATGCCGTCATCACCGCGGTCTCGGCCATGCTCATATCC
GCCTTCGATGAAATGTCCGTCGTCGCAAGGCTGGGCGGGGAGGAGTTCGGCGTCATCATCTCCGGCGAGCCGCTGGAGGC
GCGGATGGAACGCATCGAAGGTGTCCGGGCCCGAATCGCAGGCGGCGCCATCGCAGCCGAGGGGCATGATATCCGCATCA
CCGTTTCCGGCGGTGTCGCCGATCTCGCCGCCGGGCGCAACAAGCAGGCGGTCTATGCGTCGGCAGACCGGGCGCTCTAC
CTCGCCAAGGCGCTCGGGCGCAATCGCGTCGTACACGAGCGGGAAGGCCTGCATCATGCCTGGCACGGGCTCGCCGATAA
TGGCCTCGAGGCCAAGGGCAGGGGAGTTGAGAGCGACAACGTGATGCAGGCTTACGGAATATAA

Upstream 100 bases:

>100_bases
AGCTTCAAAACCGCTCGAATTTTAACGAGTCGATTAAGACACCCGCAGCAATTGGGCTCCTATCAATGCCTTGAAACGCC
GGGCAGGAAGGTCGATTCTC

Downstream 100 bases:

>100_bases
AAGCCCGAAGCGAGCACAAAGGCCATTGGTGCTTGCATCGGGAAAGGCTATTTTGCATGGTCGCCTCAGCAAAACGGACA
TATCATGCAGCGCGTTACCT

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MRNWMSLQADFGNFQYRGNVYVFALKMSFLTVLLSGVIMAVTIPPLGFLGLLPETLSHAIGFGVIFSWLVGGTVSGMLSL
AAGFALHELTLSRAEFEKLSRTDTLSGLLNRRAFTEALENTEGDASLVIFDVDRFKAINDRFGHGCGDAVITAVSAMLIS
AFDEMSVVARLGGEEFGVIISGEPLEARMERIEGVRARIAGGAIAAEGHDIRITVSGGVADLAAGRNKQAVYASADRALY
LAKALGRNRVVHEREGLHHAWHGLADNGLEAKGRGVESDNVMQAYGI

Sequences:

>Translated_287_residues
MRNWMSLQADFGNFQYRGNVYVFALKMSFLTVLLSGVIMAVTIPPLGFLGLLPETLSHAIGFGVIFSWLVGGTVSGMLSL
AAGFALHELTLSRAEFEKLSRTDTLSGLLNRRAFTEALENTEGDASLVIFDVDRFKAINDRFGHGCGDAVITAVSAMLIS
AFDEMSVVARLGGEEFGVIISGEPLEARMERIEGVRARIAGGAIAAEGHDIRITVSGGVADLAAGRNKQAVYASADRALY
LAKALGRNRVVHEREGLHHAWHGLADNGLEAKGRGVESDNVMQAYGI
>Mature_287_residues
MRNWMSLQADFGNFQYRGNVYVFALKMSFLTVLLSGVIMAVTIPPLGFLGLLPETLSHAIGFGVIFSWLVGGTVSGMLSL
AAGFALHELTLSRAEFEKLSRTDTLSGLLNRRAFTEALENTEGDASLVIFDVDRFKAINDRFGHGCGDAVITAVSAMLIS
AFDEMSVVARLGGEEFGVIISGEPLEARMERIEGVRARIAGGAIAAEGHDIRITVSGGVADLAAGRNKQAVYASADRALY
LAKALGRNRVVHEREGLHHAWHGLADNGLEAKGRGVESDNVMQAYGI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=176, Percent_Identity=35.2272727272727, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI87082007, Length=158, Percent_Identity=36.7088607594937, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI145693134, Length=263, Percent_Identity=30.7984790874525, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1786584, Length=230, Percent_Identity=29.5652173913043, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787262, Length=196, Percent_Identity=31.6326530612245, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1788381, Length=232, Percent_Identity=30.1724137931034, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787816, Length=183, Percent_Identity=32.7868852459016, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1787802, Length=213, Percent_Identity=29.1079812206573, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787541, Length=178, Percent_Identity=30.8988764044944, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788085, Length=183, Percent_Identity=29.5081967213115, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787056, Length=150, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 30756; Mature: 30756

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNWMSLQADFGNFQYRGNVYVFALKMSFLTVLLSGVIMAVTIPPLGFLGLLPETLSHAI
CCCCEEEEECCCCEEEECCEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
GFGVIFSWLVGGTVSGMLSLAAGFALHELTLSRAEFEKLSRTDTLSGLLNRRAFTEALEN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TEGDASLVIFDVDRFKAINDRFGHGCGDAVITAVSAMLISAFDEMSVVARLGGEEFGVII
CCCCCEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
SGEPLEARMERIEGVRARIAGGAIAAEGHDIRITVSGGVADLAAGRNKQAVYASADRALY
ECCCHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCHHHHHCCCCCCEEEECCCHHHH
LAKALGRNRVVHEREGLHHAWHGLADNGLEAKGRGVESDNVMQAYGI
HHHHHCCCCCHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCC
>Mature Secondary Structure
MRNWMSLQADFGNFQYRGNVYVFALKMSFLTVLLSGVIMAVTIPPLGFLGLLPETLSHAI
CCCCEEEEECCCCEEEECCEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
GFGVIFSWLVGGTVSGMLSLAAGFALHELTLSRAEFEKLSRTDTLSGLLNRRAFTEALEN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TEGDASLVIFDVDRFKAINDRFGHGCGDAVITAVSAMLISAFDEMSVVARLGGEEFGVII
CCCCCEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
SGEPLEARMERIEGVRARIAGGAIAAEGHDIRITVSGGVADLAAGRNKQAVYASADRALY
ECCCHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCHHHHHCCCCCCEEEECCCHHHH
LAKALGRNRVVHEREGLHHAWHGLADNGLEAKGRGVESDNVMQAYGI
HHHHHCCCCCHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]