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The map label for this gene is rpoE [H]

Identifier: 209550600

GI number: 209550600

Start: 3083209

End: 3083766

Strand: Reverse

Name: rpoE [H]

Synonym: Rleg2_3024

Alternate gene names: 209550600

Gene position: 3083766-3083209 (Counterclockwise)

Preceding gene: 209550601

Following gene: 209550592

Centisome position: 67.96

GC content: 61.29

Gene sequence:

>558_bases
ATGGAAGATAAAGCGCAACCCAGCTTCAAGCGGGAACTGCTGGCGGCCCTCCCAAGTCTCCGCGCCTTCGCAATTTCGCT
CATTGGGCGGCATGATCGTGCCGATGATCTCGTCCAGGACACCATCATGAAGGCCTGGGCCAAACAGGATCATTTCGAGA
TGGGCACCAATATGAAGGCCTGGCTCTTCACGATCCTGCGTAACGAACTCTATAGCCAGATGCGCAAGAGCGGCCGCGAG
ATCCAGGACAGCGACGGGCTGTTCACGGAATCGATGGCGATGCACCCCTCGCAATATGGCGCCCTCGATCTGCAGGACTT
CAAGAAGGCGCTCGACCAGCTGCCGCCGGATCAGCGCGAGGCGATCATCCTCGTCGGCGCCTCAGGTTTTTCCTACGAAG
AAGCGGCCGAAATCTGCGGCTGCGCCGTCGGCACCATCAAGAGCCGCGTCAACCGCGCCCGCCAGCGGCTGCAGGAATTG
CTGCAGATATCAGGCGAGGCCGATTTCGGCCCCGACGCCACCTCGGCGCCGCTGACGTCGAAGGCGTTTGCGTTCTGA

Upstream 100 bases:

>100_bases
CAGGAGGAGGCGATTCCCGATCGTTTTCTCGACCTTCTCGAAAAGCTTGACCATGCCGAAATGATGGCCTCTGCCAAGAT
GGCCGAATAGGATCATGCGC

Downstream 100 bases:

>100_bases
GAAAGTTATGATTGCGAGGAAGCCGGCGGCTTGTTGGGGCGCCGGCTTTTTGCATCGTAGAGGCGATCGCTACCTTTCCC
CCTCATTCCTGTGCTTGTCA

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MEDKAQPSFKRELLAALPSLRAFAISLIGRHDRADDLVQDTIMKAWAKQDHFEMGTNMKAWLFTILRNELYSQMRKSGRE
IQDSDGLFTESMAMHPSQYGALDLQDFKKALDQLPPDQREAIILVGASGFSYEEAAEICGCAVGTIKSRVNRARQRLQEL
LQISGEADFGPDATSAPLTSKAFAF

Sequences:

>Translated_185_residues
MEDKAQPSFKRELLAALPSLRAFAISLIGRHDRADDLVQDTIMKAWAKQDHFEMGTNMKAWLFTILRNELYSQMRKSGRE
IQDSDGLFTESMAMHPSQYGALDLQDFKKALDQLPPDQREAIILVGASGFSYEEAAEICGCAVGTIKSRVNRARQRLQEL
LQISGEADFGPDATSAPLTSKAFAF
>Mature_185_residues
MEDKAQPSFKRELLAALPSLRAFAISLIGRHDRADDLVQDTIMKAWAKQDHFEMGTNMKAWLFTILRNELYSQMRKSGRE
IQDSDGLFTESMAMHPSQYGALDLQDFKKALDQLPPDQREAIILVGASGFSYEEAAEICGCAVGTIKSRVNRARQRLQEL
LQISGEADFGPDATSAPLTSKAFAF

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20632; Mature: 20632

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDKAQPSFKRELLAALPSLRAFAISLIGRHDRADDLVQDTIMKAWAKQDHFEMGTNMKA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
WLFTILRNELYSQMRKSGREIQDSDGLFTESMAMHPSQYGALDLQDFKKALDQLPPDQRE
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCC
AIILVGASGFSYEEAAEICGCAVGTIKSRVNRARQRLQELLQISGEADFGPDATSAPLTS
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
KAFAF
HHHCC
>Mature Secondary Structure
MEDKAQPSFKRELLAALPSLRAFAISLIGRHDRADDLVQDTIMKAWAKQDHFEMGTNMKA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
WLFTILRNELYSQMRKSGREIQDSDGLFTESMAMHPSQYGALDLQDFKKALDQLPPDQRE
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCC
AIILVGASGFSYEEAAEICGCAVGTIKSRVNRARQRLQELLQISGEADFGPDATSAPLTS
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
KAFAF
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]