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The map label for this gene is xylR [H]

Identifier: 209550501

GI number: 209550501

Start: 2981379

End: 2982602

Strand: Reverse

Name: xylR [H]

Synonym: Rleg2_2924

Alternate gene names: 209550501

Gene position: 2982602-2981379 (Counterclockwise)

Preceding gene: 209550505

Following gene: 209550498

Centisome position: 65.73

GC content: 64.87

Gene sequence:

>1224_bases
ATGCTGACCAAGTCGAGCACGGAGCTGGTCCGGCAGAGAAACAGCGTGCTCGTGCTGTCCGTGCTGCGCCGTCACGGCGC
GCTCGCCCATACCGAAATATCGGATTTCACCGGCCTTTCCTCGGCCACCATCTCGGCGATCACAGCCGATCTGGAACGCG
CGCATATCATCGAAAAATCCGAGCAGCAGGCGGCGAGCGGCCGCGGCCGGCCGCGCGTGCTTCTGCGCCAGCGCCGCGAT
TGCGGCTATCTCATCGTCGTCATCATCTCGTCCGATGCCGTGCAATATTCGCTGGTGGATTATGCCGGCAAGCTGATCGA
TCGTTTCAGCGAGGAGCGCTCGCATGATCCCTCAGGGGCTGCCCGCTTCGTTGAAGGCGTGCGCGCCGGTCTCTCGCGCA
TTCTCGAGCGCTCCAGGATTACGCAAGAAAAAGTGCTGCTGATCTCGATCAGCAGCAAGGGCCTGGTCAACTCAACCGAG
CCGGTCCTCGTTTGGTCGCCGATCTTCGGCAGCGATCAGATCGATTTCGAATCGGTGCTGCGGCCGGACTGGCAGGCCAA
GGTCATCCTCGACAACGAGACGCTGCTGGTCGCAGCCGCGCTCGGCGCCCGCGAGGAGATCGTCAAGGGCGCCGATTTCC
GCTCGCTCGCCGCCTTGTCGCTCGGCCACAGTATCGGCCTCGGCATCGTCAGGCGCGGCGGCCAGACCGGCCAGGAAATC
TCGGCCCCGAATTTCGGCCACATGCTGCACATGGCGGGTGGCGGCCTCTGCCGCTGCGGCACCCGCGGCTGCATCGAGGC
CTATGCCGGCTTCTACGCCATCCTGCGCAGCGCCTTCGAAGTGCCGCTCGATACCATCCCGGCAAAATTCGTCCCCGTCA
CCGAACTCGACAAGATCGCCGCTAAAGCCCGCCAGGGCCACCGCACCTCCACCATCGCCTTCCGCCAGGCGGGCCTGGCG
CTCGGCAACGGCCTGTCGCGCATGCTCAGCCTCACCGAACGCATGCCCATCGCCATCACCGGCCCCGGCACCCGTTATTA
CGACCTGCTGCGCCAGGGCATCGAAGAGGGGCTCGGTCAGTCGCACATCGTCCGCATGGAAGGCATGCCGGAAATCCGCG
TGGTGGCAGACGAACCGATCCTCGTCTTCGAAGGCCATCTCAACCGGGCGCTCTCGGTGATCGACCAGGATATCGTGATC
TCGGGGGGGCAGGGCGGGGATTAA

Upstream 100 bases:

>100_bases
CGAGGGCGGAGAGAAGCATGATGCCGAAAAGTGTGAGCGGTTTTCTCATGATATCATGCTCTAACTTTTGAATTTTAGCG
GGAAGGAGAGGGCGGCATTC

Downstream 100 bases:

>100_bases
AGCCACCCCCAACCCCGGCCTACAGTGGCTTTCGGAAGAACACGACGCGCTGTGTCTCCTCAAATCCCAAAGCGGCATGG
AGCGCATGGCTGGCCGAATT

Product: ROK family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MLTKSSTELVRQRNSVLVLSVLRRHGALAHTEISDFTGLSSATISAITADLERAHIIEKSEQQAASGRGRPRVLLRQRRD
CGYLIVVIISSDAVQYSLVDYAGKLIDRFSEERSHDPSGAARFVEGVRAGLSRILERSRITQEKVLLISISSKGLVNSTE
PVLVWSPIFGSDQIDFESVLRPDWQAKVILDNETLLVAAALGAREEIVKGADFRSLAALSLGHSIGLGIVRRGGQTGQEI
SAPNFGHMLHMAGGGLCRCGTRGCIEAYAGFYAILRSAFEVPLDTIPAKFVPVTELDKIAAKARQGHRTSTIAFRQAGLA
LGNGLSRMLSLTERMPIAITGPGTRYYDLLRQGIEEGLGQSHIVRMEGMPEIRVVADEPILVFEGHLNRALSVIDQDIVI
SGGQGGD

Sequences:

>Translated_407_residues
MLTKSSTELVRQRNSVLVLSVLRRHGALAHTEISDFTGLSSATISAITADLERAHIIEKSEQQAASGRGRPRVLLRQRRD
CGYLIVVIISSDAVQYSLVDYAGKLIDRFSEERSHDPSGAARFVEGVRAGLSRILERSRITQEKVLLISISSKGLVNSTE
PVLVWSPIFGSDQIDFESVLRPDWQAKVILDNETLLVAAALGAREEIVKGADFRSLAALSLGHSIGLGIVRRGGQTGQEI
SAPNFGHMLHMAGGGLCRCGTRGCIEAYAGFYAILRSAFEVPLDTIPAKFVPVTELDKIAAKARQGHRTSTIAFRQAGLA
LGNGLSRMLSLTERMPIAITGPGTRYYDLLRQGIEEGLGQSHIVRMEGMPEIRVVADEPILVFEGHLNRALSVIDQDIVI
SGGQGGD
>Mature_407_residues
MLTKSSTELVRQRNSVLVLSVLRRHGALAHTEISDFTGLSSATISAITADLERAHIIEKSEQQAASGRGRPRVLLRQRRD
CGYLIVVIISSDAVQYSLVDYAGKLIDRFSEERSHDPSGAARFVEGVRAGLSRILERSRITQEKVLLISISSKGLVNSTE
PVLVWSPIFGSDQIDFESVLRPDWQAKVILDNETLLVAAALGAREEIVKGADFRSLAALSLGHSIGLGIVRRGGQTGQEI
SAPNFGHMLHMAGGGLCRCGTRGCIEAYAGFYAILRSAFEVPLDTIPAKFVPVTELDKIAAKARQGHRTSTIAFRQAGLA
LGNGLSRMLSLTERMPIAITGPGTRYYDLLRQGIEEGLGQSHIVRMEGMPEIRVVADEPILVFEGHLNRALSVIDQDIVI
SGGQGGD

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1787878, Length=360, Percent_Identity=21.6666666666667, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 44072; Mature: 44072

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTKSSTELVRQRNSVLVLSVLRRHGALAHTEISDFTGLSSATISAITADLERAHIIEKS
CCCCCHHHHHHHCCCCHHHHHHHHCCCEEECCHHHHCCCCHHHHHHHHHHHHHHHHHHHH
EQQAASGRGRPRVLLRQRRDCGYLIVVIISSDAVQYSLVDYAGKLIDRFSEERSHDPSGA
HHHHHCCCCCCHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHH
ARFVEGVRAGLSRILERSRITQEKVLLISISSKGLVNSTEPVLVWSPIFGSDQIDFESVL
HHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCHHHHH
RPDWQAKVILDNETLLVAAALGAREEIVKGADFRSLAALSLGHSIGLGIVRRGGQTGQEI
CCCCCEEEEECCCEEEEEEHHCCHHHHHCCCCHHHHHHHHHCCHHCHHHHCCCCCCCCCC
SAPNFGHMLHMAGGGLCRCGTRGCIEAYAGFYAILRSAFEVPLDTIPAKFVPVTELDKIA
CCCCCCCEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHH
AKARQGHRTSTIAFRQAGLALGNGLSRMLSLTERMPIAITGPGTRYYDLLRQGIEEGLGQ
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCC
SHIVRMEGMPEIRVVADEPILVFEGHLNRALSVIDQDIVISGGQGGD
CEEEEECCCCCEEEEECCCEEEEECHHHHHHHHHCCCEEEECCCCCC
>Mature Secondary Structure
MLTKSSTELVRQRNSVLVLSVLRRHGALAHTEISDFTGLSSATISAITADLERAHIIEKS
CCCCCHHHHHHHCCCCHHHHHHHHCCCEEECCHHHHCCCCHHHHHHHHHHHHHHHHHHHH
EQQAASGRGRPRVLLRQRRDCGYLIVVIISSDAVQYSLVDYAGKLIDRFSEERSHDPSGA
HHHHHCCCCCCHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHH
ARFVEGVRAGLSRILERSRITQEKVLLISISSKGLVNSTEPVLVWSPIFGSDQIDFESVL
HHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCHHHHH
RPDWQAKVILDNETLLVAAALGAREEIVKGADFRSLAALSLGHSIGLGIVRRGGQTGQEI
CCCCCEEEEECCCEEEEEEHHCCHHHHHCCCCHHHHHHHHHCCHHCHHHHCCCCCCCCCC
SAPNFGHMLHMAGGGLCRCGTRGCIEAYAGFYAILRSAFEVPLDTIPAKFVPVTELDKIA
CCCCCCCEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHH
AKARQGHRTSTIAFRQAGLALGNGLSRMLSLTERMPIAITGPGTRYYDLLRQGIEEGLGQ
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCC
SHIVRMEGMPEIRVVADEPILVFEGHLNRALSVIDQDIVISGGQGGD
CEEEEECCCCCEEEEECCCEEEEECHHHHHHHHHCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2544559 [H]