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The map label for this gene is ycfQ [H]

Identifier: 209550483

GI number: 209550483

Start: 2960543

End: 2961160

Strand: Direct

Name: ycfQ [H]

Synonym: Rleg2_2906

Alternate gene names: 209550483

Gene position: 2960543-2961160 (Clockwise)

Preceding gene: 209550481

Following gene: 209550485

Centisome position: 65.24

GC content: 61.81

Gene sequence:

>618_bases
ATGGCTGAACGAGGGCGACCAAGGAATTTCGATCGCGCGCAGGCACTGGACCGGGCGCTGATGGCGTTCTGGCAGAGCGG
CTTTGCGGCGACGTCGATGAACGATCTTGTCGAGGCGATGGGGATCAACTCGCCGAGCGTCTATGCTGCATTCGGATCGA
AGGAAGCGCTGTTCGCCGAGGCCGTGCAGCATTATCACACGACCTATGCGGACGAACTGCCGGCAGCACTGAAAAGCGCG
CCCGACGCCGCCGCCGGCATCGAAGCCATGCTGGAGGCGGCGGTGGAACTGTTCACGCGCCCGGATAGGCCGCATGGCTG
CTTTGTCGTGAACTCGGTGGCGAGCAATGCTCCGAACGGGATCGAAATAGAGCAGACCCTGAAAGATCTGCGGCAGGGAC
GGTCAAAGCAGATTGCCGAGCGCCTGACCGAAGATGTGCGCGGCGGCAGACTTCGGGATGATACGCCCGTTCAAGAACTG
TCGGACCTCTACGCTGCTATCCTCCAAGGCCTCGCTCAGGGCGCCCGCGATGGTCTTGCCAAGGAGCGCCTGCTGACAAT
CCCCCGCCATTCGAGGGCTCTCATTTCTCCGTGGATGTCAGACAAGAACTCTCGCTAG

Upstream 100 bases:

>100_bases
CCATGGCTCACCTATTTATGTGTCGATCAGCACAGAAATAGGTGATTGCACCGACCCTGTCGAGAGATTTATATGTTGAT
CGACACAGAATGAGGCACCC

Downstream 100 bases:

>100_bases
CGGGACCTCGATCTCACGACAGGCTTCGCCACTCCCCTGGCGGTACGCCGGTGGTGGCTTTGAAAGCCTTGGAAAAATGG
CTTTGTGAACCGAAGCCGCA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MAERGRPRNFDRAQALDRALMAFWQSGFAATSMNDLVEAMGINSPSVYAAFGSKEALFAEAVQHYHTTYADELPAALKSA
PDAAAGIEAMLEAAVELFTRPDRPHGCFVVNSVASNAPNGIEIEQTLKDLRQGRSKQIAERLTEDVRGGRLRDDTPVQEL
SDLYAAILQGLAQGARDGLAKERLLTIPRHSRALISPWMSDKNSR

Sequences:

>Translated_205_residues
MAERGRPRNFDRAQALDRALMAFWQSGFAATSMNDLVEAMGINSPSVYAAFGSKEALFAEAVQHYHTTYADELPAALKSA
PDAAAGIEAMLEAAVELFTRPDRPHGCFVVNSVASNAPNGIEIEQTLKDLRQGRSKQIAERLTEDVRGGRLRDDTPVQEL
SDLYAAILQGLAQGARDGLAKERLLTIPRHSRALISPWMSDKNSR
>Mature_204_residues
AERGRPRNFDRAQALDRALMAFWQSGFAATSMNDLVEAMGINSPSVYAAFGSKEALFAEAVQHYHTTYADELPAALKSAP
DAAAGIEAMLEAAVELFTRPDRPHGCFVVNSVASNAPNGIEIEQTLKDLRQGRSKQIAERLTEDVRGGRLRDDTPVQELS
DLYAAILQGLAQGARDGLAKERLLTIPRHSRALISPWMSDKNSR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=188, Percent_Identity=36.1702127659575, Blast_Score=118, Evalue=2e-28,
Organism=Escherichia coli, GI87082397, Length=189, Percent_Identity=29.6296296296296, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22425; Mature: 22293

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAERGRPRNFDRAQALDRALMAFWQSGFAATSMNDLVEAMGINSPSVYAAFGSKEALFAE
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEECCCCHHHHHH
AVQHYHTTYADELPAALKSAPDAAAGIEAMLEAAVELFTRPDRPHGCFVVNSVASNAPNG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHCCCCCC
IEIEQTLKDLRQGRSKQIAERLTEDVRGGRLRDDTPVQELSDLYAAILQGLAQGARDGLA
CCHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KERLLTIPRHSRALISPWMSDKNSR
HHHHHHCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AERGRPRNFDRAQALDRALMAFWQSGFAATSMNDLVEAMGINSPSVYAAFGSKEALFAE
CCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEECCCCHHHHHH
AVQHYHTTYADELPAALKSAPDAAAGIEAMLEAAVELFTRPDRPHGCFVVNSVASNAPNG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHCCCCCC
IEIEQTLKDLRQGRSKQIAERLTEDVRGGRLRDDTPVQELSDLYAAILQGLAQGARDGLA
CCHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KERLLTIPRHSRALISPWMSDKNSR
HHHHHHCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]