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The map label for this gene is msmE [H]

Identifier: 209550226

GI number: 209550226

Start: 2692874

End: 2694133

Strand: Reverse

Name: msmE [H]

Synonym: Rleg2_2646

Alternate gene names: 209550226

Gene position: 2694133-2692874 (Counterclockwise)

Preceding gene: 209550231

Following gene: 209550225

Centisome position: 59.37

GC content: 60.71

Gene sequence:

>1260_bases
ATGAAAAACACTGCTCTGAAAAGCTTCCTGCTTGCCTCCAGCTTGCTGACATCGGCAGGTCTCGTCCATGCCGCCGACGT
CACGCTGACTGTGGAAAGCTGGCGTAACGACGACCTGCAGATCTGGCAGGAGAAGATCATCCCGGCTTTCGAAGCCAAGA
ACCCGGGCATCAAGATCGTCTTCTCGCCGACCGCGCCGACCGAATACAACGCGTCGCTGAACGCCAAGCTGGATGCCGGT
TCCGCAGGCGATATCATCACCTGCCGTCCGTTCGACGCCTCGCTCGAACTCTTCAACAAGAAGCAACTCGTCGACATCAC
CAGCCTGCCCGGTATGGAGAACTTCTCGCCGGTCGCCAAGGCCGCCTGGTCGACCGACGACGGCAAGTCGACCTTCTGCG
TGCCGATGGCTTCGGTCATCCACGGTTTCATCTACAACAAGGATGCCTTCGACAAGCTCGGCATCTCCGTGCCGAAGACG
CAGGACGAATTCTACGCGGCGCTCGACAAGATCAAGGCCGACGGCACCTATATCCCGCTCGCCATGGGCACGAAGGACCT
CTGGGAAGCCGCAACCATGGGCTACCAGAACATCGGCCCGAATTACTGGAAGGGCGAGGACGGCCGCGACGCCCTGATCG
CCGGCAAGCAGAAGCTGACCGATGCCGACTGGGTCAAGCCCTATGAAGAGCTTGCCAAGTGGAAGCCCTATCTCGGCGAC
GGTTTCGAAGCCCAGACCTATTCGGACAGTCAAAACCTCTTCACCCTCGGACGCGCCGCCATCTATCCGGCCGGTTCCTG
GGAAATCGCGCTTTTCAACACGCAGGCGCAGTTCAAGATGGGCGCCTTCCCGCCGCCGGTTCCGAAGGCCGGCGACCAGG
GCTACATCTCCGACCATCCGGATATCGGCGTCGCCCTGAATGCCAAGAGCAAGCATGCCGAGGAAGCCAAGAAATTCCTC
AGCTGGGTCGCTTCGCCCGAGTTCGCCGACATTTACGCCAACTCCCTGCCGGGCTTCTTCAGCCTGAACTCCAACCCCGT
CAAGATGTCCGATCCGCTTGCTCAGGAATTCGTTTCCTGGCGCGGCCCGTACAAGTCGACCGTGCGCTCGACCTACCAGA
TCCTGTCGCGCGGCACGCCGAACCTCGAAAACGAGACCTGGGTCGAATCGGCCAACGTGATCAACGGCACGGATACGCCG
AAGGTCGCTGCCGAGAAGCTGCAGAAGGGCCTCGACAGCTGGTACAAGCCGGCCAAGTGA

Upstream 100 bases:

>100_bases
TGGCGGCCCTCAAGGGGCGTTGGGTGTTTCCTCAAGCACGCCAACCGCTTGTTTCAGATCGAAAACGGCGCCTTTCGGCG
CCTGAAAACAGGAGAGGGAA

Downstream 100 bases:

>100_bases
TGTGAGGAGGGGCGGCGTTTGCGGCCCCTCATCCGGCCTGCCGGCCACCTTCTCCCCGCGAGCGGGGAGAAGGAGACTCG
CAGCGACCTCCCAGCCCGAT

Product: family 1 extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MKNTALKSFLLASSLLTSAGLVHAADVTLTVESWRNDDLQIWQEKIIPAFEAKNPGIKIVFSPTAPTEYNASLNAKLDAG
SAGDIITCRPFDASLELFNKKQLVDITSLPGMENFSPVAKAAWSTDDGKSTFCVPMASVIHGFIYNKDAFDKLGISVPKT
QDEFYAALDKIKADGTYIPLAMGTKDLWEAATMGYQNIGPNYWKGEDGRDALIAGKQKLTDADWVKPYEELAKWKPYLGD
GFEAQTYSDSQNLFTLGRAAIYPAGSWEIALFNTQAQFKMGAFPPPVPKAGDQGYISDHPDIGVALNAKSKHAEEAKKFL
SWVASPEFADIYANSLPGFFSLNSNPVKMSDPLAQEFVSWRGPYKSTVRSTYQILSRGTPNLENETWVESANVINGTDTP
KVAAEKLQKGLDSWYKPAK

Sequences:

>Translated_419_residues
MKNTALKSFLLASSLLTSAGLVHAADVTLTVESWRNDDLQIWQEKIIPAFEAKNPGIKIVFSPTAPTEYNASLNAKLDAG
SAGDIITCRPFDASLELFNKKQLVDITSLPGMENFSPVAKAAWSTDDGKSTFCVPMASVIHGFIYNKDAFDKLGISVPKT
QDEFYAALDKIKADGTYIPLAMGTKDLWEAATMGYQNIGPNYWKGEDGRDALIAGKQKLTDADWVKPYEELAKWKPYLGD
GFEAQTYSDSQNLFTLGRAAIYPAGSWEIALFNTQAQFKMGAFPPPVPKAGDQGYISDHPDIGVALNAKSKHAEEAKKFL
SWVASPEFADIYANSLPGFFSLNSNPVKMSDPLAQEFVSWRGPYKSTVRSTYQILSRGTPNLENETWVESANVINGTDTP
KVAAEKLQKGLDSWYKPAK
>Mature_419_residues
MKNTALKSFLLASSLLTSAGLVHAADVTLTVESWRNDDLQIWQEKIIPAFEAKNPGIKIVFSPTAPTEYNASLNAKLDAG
SAGDIITCRPFDASLELFNKKQLVDITSLPGMENFSPVAKAAWSTDDGKSTFCVPMASVIHGFIYNKDAFDKLGISVPKT
QDEFYAALDKIKADGTYIPLAMGTKDLWEAATMGYQNIGPNYWKGEDGRDALIAGKQKLTDADWVKPYEELAKWKPYLGD
GFEAQTYSDSQNLFTLGRAAIYPAGSWEIALFNTQAQFKMGAFPPPVPKAGDQGYISDHPDIGVALNAKSKHAEEAKKFL
SWVASPEFADIYANSLPGFFSLNSNPVKMSDPLAQEFVSWRGPYKSTVRSTYQILSRGTPNLENETWVESANVINGTDTP
KVAAEKLQKGLDSWYKPAK

Specific function: Involved in a binding protein-dependent transport system responsible for the uptake of melibiose, raffinose and isomaltotriose [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 45971; Mature: 45971

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS01037 SBP_BACTERIAL_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNTALKSFLLASSLLTSAGLVHAADVTLTVESWRNDDLQIWQEKIIPAFEAKNPGIKIV
CCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEE
FSPTAPTEYNASLNAKLDAGSAGDIITCRPFDASLELFNKKQLVDITSLPGMENFSPVAK
ECCCCCCCCCCEEEEEECCCCCCCEEEECCCCHHHHHHCCCCEEEEECCCCCCCCCHHHH
AAWSTDDGKSTFCVPMASVIHGFIYNKDAFDKLGISVPKTQDEFYAALDKIKADGTYIPL
HHCCCCCCCCEEHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEE
AMGTKDLWEAATMGYQNIGPNYWKGEDGRDALIAGKQKLTDADWVKPYEELAKWKPYLGD
ECCCHHHHHHHHCCHHHCCCCCCCCCCCCCCEEECCHHCCCCHHCCHHHHHHHCCCCCCC
GFEAQTYSDSQNLFTLGRAAIYPAGSWEIALFNTQAQFKMGAFPPPVPKAGDQGYISDHP
CCCCCCCCCCCCEEEECCEEEECCCCEEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCC
DIGVALNAKSKHAEEAKKFLSWVASPEFADIYANSLPGFFSLNSNPVKMSDPLAQEFVSW
CCCEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHH
RGPYKSTVRSTYQILSRGTPNLENETWVESANVINGTDTPKVAAEKLQKGLDSWYKPAK
CCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCEECCCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKNTALKSFLLASSLLTSAGLVHAADVTLTVESWRNDDLQIWQEKIIPAFEAKNPGIKIV
CCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEE
FSPTAPTEYNASLNAKLDAGSAGDIITCRPFDASLELFNKKQLVDITSLPGMENFSPVAK
ECCCCCCCCCCEEEEEECCCCCCCEEEECCCCHHHHHHCCCCEEEEECCCCCCCCCHHHH
AAWSTDDGKSTFCVPMASVIHGFIYNKDAFDKLGISVPKTQDEFYAALDKIKADGTYIPL
HHCCCCCCCCEEHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEE
AMGTKDLWEAATMGYQNIGPNYWKGEDGRDALIAGKQKLTDADWVKPYEELAKWKPYLGD
ECCCHHHHHHHHCCHHHCCCCCCCCCCCCCCEEECCHHCCCCHHCCHHHHHHHCCCCCCC
GFEAQTYSDSQNLFTLGRAAIYPAGSWEIALFNTQAQFKMGAFPPPVPKAGDQGYISDHP
CCCCCCCCCCCCEEEECCEEEECCCCEEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCC
DIGVALNAKSKHAEEAKKFLSWVASPEFADIYANSLPGFFSLNSNPVKMSDPLAQEFVSW
CCCEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHH
RGPYKSTVRSTYQILSRGTPNLENETWVESANVINGTDTPKVAAEKLQKGLDSWYKPAK
CCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCEECCCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1537846; 12397186 [H]