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The map label for this gene is araQ [H]

Identifier: 209550224

GI number: 209550224

Start: 2690867

End: 2691706

Strand: Reverse

Name: araQ [H]

Synonym: Rleg2_2644

Alternate gene names: 209550224

Gene position: 2691706-2690867 (Counterclockwise)

Preceding gene: 209550225

Following gene: 209550223

Centisome position: 59.32

GC content: 61.67

Gene sequence:

>840_bases
ATGTCCAAGGCACGCACATCTCCGATCCGCACCGGCCTCGTGCATCTGGCGCTTGGCGCCTATACGCTGGTCGCGCTGTT
TCCGGTTTTCCTGACCGTCGTCAACTCGTTCAAGGATCGGGCCTCGATCTTCCGCGAGCCGCTGATGGTGCCGACGCCGT
CGACCTTCAGTCTGGTCGGCTATCAGACGGTGCTGGGGCAGGGCGATTTCGCCACCTATTTTCAGAACAGCTTCATCGTG
ACGATCGTCTCGATCCTGCTGGTGCTGCTCTTCGGCGCCATGGCGGCCTTTGCGCTCTCGGAATATCGTTTCCGCGGCAA
TACGCTGCTCGGTCTCTATATGGCGATCGGCATCATGATCCCGATCCGCCTCGGTACGGTGGCAATCCTGCAGGGCATGG
TGGCGGCAGGCCTCGTCAATACGCTGACGGCGCTGGTCCTCGTCTACACCGCGCAGGGCATACCGCTGGCAATCTTCATC
CTGTCGGAATTCATGCGCACGGTTTCGGACGATCTGAAGAATGCCGGGCGCATCGACGGGCTTTCCGAATATGCGATCTT
CTTCCGCCTGGTGCTGCCGCTGGTGCGCCCCGCCATGGCGACGGTCGCCGTCTTCACGATGATCCCGATCTGGAACGATC
TCTGGTTCCCGCTGATCCTGGCGCCCTCCGAGGCCACCAAGACGGTAACGCTCGGCTCGCAGATCTTCATCGGCCAGTTC
GTCACCAACTGGAATGCGGTGCTGGCGGCGCTGTCGCTGGCGATCCTGCCGATCCTCGTCCTCTACGTCATCTTCTCGCG
GCAGCTGATCCGCGGCATTACGTCAGGAGCCGTCAAGTGA

Upstream 100 bases:

>100_bases
GATCGCCACGGTGATGTTCCTCATCATTCTCGCCGGCGTCTCGCTTTATCTTTTCGTCATCCAGCGGCGCATGCGTCGCT
ACCAGTTCTGAGGAGCGCGC

Downstream 100 bases:

>100_bases
GCCACGAGAAACCCATCCGCGTCCTCGTCGCCGGCCTCGGCAACATGGGCCGCAGCCATGCGCTCGCCTATCACAACAAT
CCAGGCTTCGAGATCGTCGG

Product: binding-protein-dependent transporters inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MSKARTSPIRTGLVHLALGAYTLVALFPVFLTVVNSFKDRASIFREPLMVPTPSTFSLVGYQTVLGQGDFATYFQNSFIV
TIVSILLVLLFGAMAAFALSEYRFRGNTLLGLYMAIGIMIPIRLGTVAILQGMVAAGLVNTLTALVLVYTAQGIPLAIFI
LSEFMRTVSDDLKNAGRIDGLSEYAIFFRLVLPLVRPAMATVAVFTMIPIWNDLWFPLILAPSEATKTVTLGSQIFIGQF
VTNWNAVLAALSLAILPILVLYVIFSRQLIRGITSGAVK

Sequences:

>Translated_279_residues
MSKARTSPIRTGLVHLALGAYTLVALFPVFLTVVNSFKDRASIFREPLMVPTPSTFSLVGYQTVLGQGDFATYFQNSFIV
TIVSILLVLLFGAMAAFALSEYRFRGNTLLGLYMAIGIMIPIRLGTVAILQGMVAAGLVNTLTALVLVYTAQGIPLAIFI
LSEFMRTVSDDLKNAGRIDGLSEYAIFFRLVLPLVRPAMATVAVFTMIPIWNDLWFPLILAPSEATKTVTLGSQIFIGQF
VTNWNAVLAALSLAILPILVLYVIFSRQLIRGITSGAVK
>Mature_278_residues
SKARTSPIRTGLVHLALGAYTLVALFPVFLTVVNSFKDRASIFREPLMVPTPSTFSLVGYQTVLGQGDFATYFQNSFIVT
IVSILLVLLFGAMAAFALSEYRFRGNTLLGLYMAIGIMIPIRLGTVAILQGMVAAGLVNTLTALVLVYTAQGIPLAIFIL
SEFMRTVSDDLKNAGRIDGLSEYAIFFRLVLPLVRPAMATVAVFTMIPIWNDLWFPLILAPSEATKTVTLGSQIFIGQFV
TNWNAVLAALSLAILPILVLYVIFSRQLIRGITSGAVK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=287, Percent_Identity=27.8745644599303, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789860, Length=261, Percent_Identity=26.0536398467433, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790464, Length=296, Percent_Identity=22.972972972973, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30347; Mature: 30216

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKARTSPIRTGLVHLALGAYTLVALFPVFLTVVNSFKDRASIFREPLMVPTPSTFSLVG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
YQTVLGQGDFATYFQNSFIVTIVSILLVLLFGAMAAFALSEYRFRGNTLLGLYMAIGIMI
HHHHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
PIRLGTVAILQGMVAAGLVNTLTALVLVYTAQGIPLAIFILSEFMRTVSDDLKNAGRIDG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
LSEYAIFFRLVLPLVRPAMATVAVFTMIPIWNDLWFPLILAPSEATKTVTLGSQIFIGQF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEECCCHHHHHHH
VTNWNAVLAALSLAILPILVLYVIFSRQLIRGITSGAVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SKARTSPIRTGLVHLALGAYTLVALFPVFLTVVNSFKDRASIFREPLMVPTPSTFSLVG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
YQTVLGQGDFATYFQNSFIVTIVSILLVLLFGAMAAFALSEYRFRGNTLLGLYMAIGIMI
HHHHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
PIRLGTVAILQGMVAAGLVNTLTALVLVYTAQGIPLAIFILSEFMRTVSDDLKNAGRIDG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
LSEYAIFFRLVLPLVRPAMATVAVFTMIPIWNDLWFPLILAPSEATKTVTLGSQIFIGQF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEECCCHHHHHHH
VTNWNAVLAALSLAILPILVLYVIFSRQLIRGITSGAVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]