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The map label for this gene is soxA [H]

Identifier: 209550184

GI number: 209550184

Start: 2646161

End: 2647336

Strand: Reverse

Name: soxA [H]

Synonym: Rleg2_2604

Alternate gene names: 209550184

Gene position: 2647336-2646161 (Counterclockwise)

Preceding gene: 209550185

Following gene: 209550183

Centisome position: 58.34

GC content: 63.44

Gene sequence:

>1176_bases
ATGGCAGTCGATTTCAAATATATCGTCGTCGGCCGCGGGCTGATGGGGGCCGCGGCGGCGCGGCATCTGGCGCGACAAGT
GGATGGCGTGGCGGTGATCGGCCCGGACGAGCCCGATGATCGCAAGGCGCATCAAGGCGTCTTCGCCAGCCACTACGACG
AGGGGCGCATCACCCGCACCATCGATCCCGACCGCAACTGGGCGCTGCTCGCCAATCGCTCGATCGGCCGCTACGGCGAG
ATCGCCCGCGACAGCGGCATCGACTTCTATCGCGAGGCCGGCTGCGTCGTCGTTGGCGCTGATCGAGGCAATTATCTCGA
AAAAACCCGGCAGGCGGCCGTTTCGCTGGATGTCGAAACCAGCCTTATCGACGCGGCCGGGCTGAAGGCCGCCTTTCCGT
TCTTTGCCTTCCCCGATGGCGCCGCCGGCGTCTTCGAGGCGAGTGGGGCCGGGCATATCAGTCCGCGCAAGCTGGTGAAG
GCGCAGTCGTTGCTGGCGGAAAAGGCAGGTGCTGCGGTCATTCGCGATCATGTCGTTTCGATCCGCAGCGATGGCGGTTC
GGCTGTCGTCGAGACTGCCGGCGGCCGGGGCTATCGCGGTGAAAAGGTGCTGCTGGCTGCGGGCGGATTTTCCATTGCAG
AGAATCTGTTGCCGAAGCCGGTTGCCATGACGGTTTATGGTCGGACCGTCACGCTTTTCGAGGTGAGCGAAGCCGACGCG
GCGCGCCTTGAGACCATGCCCTCGCTCATTTTGAATGTGCCCGGCACCCATATTTATCTGCTGCCTCCCATCCGTTATCC
CGACGGCAAATTCTACCTGAAGATCGGCGGCGACCCCGACGATCTGGCACTCGGCGACGCGGTAGCGATGCGCGCCTGGT
TCAAAACCGAGGGGCGCGAGACCGTGCGCGCCTATCACGAACGCATCTTCGAAGGTCTCGTGCCCGATTTGGCGCCGCTC
TCGATTTCGACGGCGGCCTGCGTCGTCTCGCAGACGGAAAGCGGCTACCCGATGATCGGCTACACCTCATCGCCTGAAAT
CGCGGTGCTGACGGGCTGCGCCGGCACCTCGGCGAAGAGCTCGGATGAAATCGGCCGGCTTGGGGCCGAACTGCTTTTGT
CAGGCAGAATCAGCGAACAGGGCTACTCCACGGATTTCACACCGGAATTTCGCTAA

Upstream 100 bases:

>100_bases
AACTGGGGCGATTGGGGGCCGTGCTGCTGACCGAAGGGGCGCTCGGCGACAAGGATTTCGGCGGCGAGTTGACGCCGGTC
TTTGCCTGAAAGGGAGCATC

Downstream 100 bases:

>100_bases
ATAAATTTTGATTTCGGTGGCAATTGCCGTCTCTCTCGTTTATGGGACCCCTGCCAGTTGGCTGGGCAGCCGCGCTTTAT
CAATGCCGAAAGGCGGTAGG

Product: FAD dependent oxidoreductase

Products: NA

Alternate protein names: MSOX [H]

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MAVDFKYIVVGRGLMGAAAARHLARQVDGVAVIGPDEPDDRKAHQGVFASHYDEGRITRTIDPDRNWALLANRSIGRYGE
IARDSGIDFYREAGCVVVGADRGNYLEKTRQAAVSLDVETSLIDAAGLKAAFPFFAFPDGAAGVFEASGAGHISPRKLVK
AQSLLAEKAGAAVIRDHVVSIRSDGGSAVVETAGGRGYRGEKVLLAAGGFSIAENLLPKPVAMTVYGRTVTLFEVSEADA
ARLETMPSLILNVPGTHIYLLPPIRYPDGKFYLKIGGDPDDLALGDAVAMRAWFKTEGRETVRAYHERIFEGLVPDLAPL
SISTAACVVSQTESGYPMIGYTSSPEIAVLTGCAGTSAKSSDEIGRLGAELLLSGRISEQGYSTDFTPEFR

Sequences:

>Translated_391_residues
MAVDFKYIVVGRGLMGAAAARHLARQVDGVAVIGPDEPDDRKAHQGVFASHYDEGRITRTIDPDRNWALLANRSIGRYGE
IARDSGIDFYREAGCVVVGADRGNYLEKTRQAAVSLDVETSLIDAAGLKAAFPFFAFPDGAAGVFEASGAGHISPRKLVK
AQSLLAEKAGAAVIRDHVVSIRSDGGSAVVETAGGRGYRGEKVLLAAGGFSIAENLLPKPVAMTVYGRTVTLFEVSEADA
ARLETMPSLILNVPGTHIYLLPPIRYPDGKFYLKIGGDPDDLALGDAVAMRAWFKTEGRETVRAYHERIFEGLVPDLAPL
SISTAACVVSQTESGYPMIGYTSSPEIAVLTGCAGTSAKSSDEIGRLGAELLLSGRISEQGYSTDFTPEFR
>Mature_390_residues
AVDFKYIVVGRGLMGAAAARHLARQVDGVAVIGPDEPDDRKAHQGVFASHYDEGRITRTIDPDRNWALLANRSIGRYGEI
ARDSGIDFYREAGCVVVGADRGNYLEKTRQAAVSLDVETSLIDAAGLKAAFPFFAFPDGAAGVFEASGAGHISPRKLVKA
QSLLAEKAGAAVIRDHVVSIRSDGGSAVVETAGGRGYRGEKVLLAAGGFSIAENLLPKPVAMTVYGRTVTLFEVSEADAA
RLETMPSLILNVPGTHIYLLPPIRYPDGKFYLKIGGDPDDLALGDAVAMRAWFKTEGRETVRAYHERIFEGLVPDLAPLS
ISTAACVVSQTESGYPMIGYTSSPEIAVLTGCAGTSAKSSDEIGRLGAELLLSGRISEQGYSTDFTPEFR

Specific function: Catalyzes the oxidative demethylation of sarcosine. Can also oxidize other secondary amino acids such as N-methyl-L- alanine [H]

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MSOX/MTOX family. MSOX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787298, Length=220, Percent_Identity=26.3636363636364, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR006281 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 41587; Mature: 41455

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVDFKYIVVGRGLMGAAAARHLARQVDGVAVIGPDEPDDRKAHQGVFASHYDEGRITRT
CCEEEEEEEECCCHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHCCCCEEECCCCCEEEE
IDPDRNWALLANRSIGRYGEIARDSGIDFYREAGCVVVGADRGNYLEKTRQAAVSLDVET
ECCCCCEEEEECCCCCCCCCHHHCCCCCHHHCCCEEEEECCCCCHHHHHHHHHEEEECHH
SLIDAAGLKAAFPFFAFPDGAAGVFEASGAGHISPRKLVKAQSLLAEKAGAAVIRDHVVS
HHHHHCCCHHCCCCEECCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHEEE
IRSDGGSAVVETAGGRGYRGEKVLLAAGGFSIAENLLPKPVAMTVYGRTVTLFEVSEADA
EECCCCCEEEEECCCCCCCCCEEEEEECCHHHHHHHCCCCEEEEEECCEEEEEEECCCCH
ARLETMPSLILNVPGTHIYLLPPIRYPDGKFYLKIGGDPDDLALGDAVAMRAWFKTEGRE
HHHHHHHHHHEECCCCEEEEECCEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCHH
TVRAYHERIFEGLVPDLAPLSISTAACVVSQTESGYPMIGYTSSPEIAVLTGCAGTSAKS
HHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCCCC
SDEIGRLGAELLLSGRISEQGYSTDFTPEFR
CHHHHHHHHHHHEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AVDFKYIVVGRGLMGAAAARHLARQVDGVAVIGPDEPDDRKAHQGVFASHYDEGRITRT
CEEEEEEEECCCHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHCCCCEEECCCCCEEEE
IDPDRNWALLANRSIGRYGEIARDSGIDFYREAGCVVVGADRGNYLEKTRQAAVSLDVET
ECCCCCEEEEECCCCCCCCCHHHCCCCCHHHCCCEEEEECCCCCHHHHHHHHHEEEECHH
SLIDAAGLKAAFPFFAFPDGAAGVFEASGAGHISPRKLVKAQSLLAEKAGAAVIRDHVVS
HHHHHCCCHHCCCCEECCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHEEE
IRSDGGSAVVETAGGRGYRGEKVLLAAGGFSIAENLLPKPVAMTVYGRTVTLFEVSEADA
EECCCCCEEEEECCCCCCCCCEEEEEECCHHHHHHHCCCCEEEEEECCEEEEEEECCCCH
ARLETMPSLILNVPGTHIYLLPPIRYPDGKFYLKIGGDPDDLALGDAVAMRAWFKTEGRE
HHHHHHHHHHEECCCCEEEEECCEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCHH
TVRAYHERIFEGLVPDLAPLSISTAACVVSQTESGYPMIGYTSSPEIAVLTGCAGTSAKS
HHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCCCC
SDEIGRLGAELLLSGRISEQGYSTDFTPEFR
CHHHHHHHHHHHEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10220347; 10913293; 11087383; 10368302 [H]