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The map label for this gene is glxA [H]

Identifier: 209549744

GI number: 209549744

Start: 2208604

End: 2209626

Strand: Direct

Name: glxA [H]

Synonym: Rleg2_2152

Alternate gene names: 209549744

Gene position: 2208604-2209626 (Clockwise)

Preceding gene: 209549743

Following gene: 209549747

Centisome position: 48.67

GC content: 63.54

Gene sequence:

>1023_bases
ATGAACAGGATGCAGATCAAGAAGCGTTCACTGGTCTTCTTTATGGTACCGCAATTCACCATGCTGCCCTTTTCGGCGGC
CGTGGACACCTTGCGCATCGCCAATCGCATGCTCGGCTACCAGGCCTATACCTGGCGGCTCGCCTCCCTTGATGGGGAGA
AAGTCTATTCTTCCTGCGGCATCGGCGTCGAGGCCAATTCCTCGCTCGCCGAAGAGCGCCGCCATCTCGGCGGTGAAAAC
CGGCCGGGCATGGTGCTCGTCTGTTCCGGCATCGATGTCGAGCAGTTCAACAACAAGTCGGTCAATGCCTGGCTGCGCGA
ATGCTACAATCGCGGCGTTGCCGTCGGCAGCCTCTGTACGGGCGCGCATGTACTGGCTCAGGCCGGCCTGCTGAACGGCA
AGCGCTGCGCCATCCACTGGGAAAACCTGCCGGGCTTTTCGGAAGCCTTCCCGCAGGCCGAAGTCTATGCCGATCTCTAC
GAGATCGACGGCAATCTCTACACCTGCGCCGGTGGCACTGCCTCGCTCGACATGATGCTGAACCTCGTCGGCGAGGATTT
CGGCGAAAGCCTCGTCAACCGCATCTGTGAACAGCACCTGACCGACCGCGTGCGCAACCCGCATGACCGCCAGCGCCTGC
CGCTGCGCGCCCGCCTCGGCGTGCAGAACGCCAAGGTGCTGTCGATCATCGAACTGATGGAAGGCAATCTTGCCGAGCCG
CTGTCGCTGATCGAGATCGCCGACGGCGCCGGCCTCTCGCGCCGCCAGATCGAGCGGCTGTTCCGTCAGGAGATGGGCCG
CTCGCCGGCCCGCTACTATCTGGAAATCCGCCTCGATCGCGCCCGCCACCTGCTGGTGCAGTCCTCGATGCCCGTCGTCG
AGGTCGCCGTCGCCTGCGGCTTCGTCTCGGCATCGCACTTTTCCAAGTGTTATCGCGAACTCTACCATCGCTCGCCGCAG
CAGGAGCGCGCCGAGCGCAAGATGACCATGGCGACTGCGCGTCAACAGGCGGTCGCGGCCTGA

Upstream 100 bases:

>100_bases
TCCCGGCCGCATTTTTCCATGCCAGTGTCGCTTTCAGGGCATCGGCGCGACGCATTCCGCGCAACGAATATGTCATCGCC
CCTCGAGCATGGATTTCGCT

Downstream 100 bases:

>100_bases
GGGTTTGAAAGAGCGCGCCGCCTGAAGTGAAAGGGCGGCGCCTTGCCAGAATGGCTCTATTGCGCCGCTTCTTCCGTCAT
CCTGGCGTCGGAAAAGACTT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MNRMQIKKRSLVFFMVPQFTMLPFSAAVDTLRIANRMLGYQAYTWRLASLDGEKVYSSCGIGVEANSSLAEERRHLGGEN
RPGMVLVCSGIDVEQFNNKSVNAWLRECYNRGVAVGSLCTGAHVLAQAGLLNGKRCAIHWENLPGFSEAFPQAEVYADLY
EIDGNLYTCAGGTASLDMMLNLVGEDFGESLVNRICEQHLTDRVRNPHDRQRLPLRARLGVQNAKVLSIIELMEGNLAEP
LSLIEIADGAGLSRRQIERLFRQEMGRSPARYYLEIRLDRARHLLVQSSMPVVEVAVACGFVSASHFSKCYRELYHRSPQ
QERAERKMTMATARQQAVAA

Sequences:

>Translated_340_residues
MNRMQIKKRSLVFFMVPQFTMLPFSAAVDTLRIANRMLGYQAYTWRLASLDGEKVYSSCGIGVEANSSLAEERRHLGGEN
RPGMVLVCSGIDVEQFNNKSVNAWLRECYNRGVAVGSLCTGAHVLAQAGLLNGKRCAIHWENLPGFSEAFPQAEVYADLY
EIDGNLYTCAGGTASLDMMLNLVGEDFGESLVNRICEQHLTDRVRNPHDRQRLPLRARLGVQNAKVLSIIELMEGNLAEP
LSLIEIADGAGLSRRQIERLFRQEMGRSPARYYLEIRLDRARHLLVQSSMPVVEVAVACGFVSASHFSKCYRELYHRSPQ
QERAERKMTMATARQQAVAA
>Mature_340_residues
MNRMQIKKRSLVFFMVPQFTMLPFSAAVDTLRIANRMLGYQAYTWRLASLDGEKVYSSCGIGVEANSSLAEERRHLGGEN
RPGMVLVCSGIDVEQFNNKSVNAWLRECYNRGVAVGSLCTGAHVLAQAGLLNGKRCAIHWENLPGFSEAFPQAEVYADLY
EIDGNLYTCAGGTASLDMMLNLVGEDFGESLVNRICEQHLTDRVRNPHDRQRLPLRARLGVQNAKVLSIIELMEGNLAEP
LSLIEIADGAGLSRRQIERLFRQEMGRSPARYYLEIRLDRARHLLVQSSMPVVEVAVACGFVSASHFSKCYRELYHRSPQ
QERAERKMTMATARQQAVAA

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=99, Percent_Identity=34.3434343434343, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38075; Mature: 38075

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRMQIKKRSLVFFMVPQFTMLPFSAAVDTLRIANRMLGYQAYTWRLASLDGEKVYSSCG
CCCCHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHEEEEECCCHHHHHHHCC
IGVEANSSLAEERRHLGGENRPGMVLVCSGIDVEQFNNKSVNAWLRECYNRGVAVGSLCT
CCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCHHHCCCCCHHHHHHHHHHCCCEEHHHHH
GAHVLAQAGLLNGKRCAIHWENLPGFSEAFPQAEVYADLYEIDGNLYTCAGGTASLDMML
HHHHHHHHHCCCCCEEEEEECCCCCHHHHCCHHHHHHHHHHHCCCEEEECCCCHHHHHHH
NLVGEDFGESLVNRICEQHLTDRVRNPHDRQRLPLRARLGVQNAKVLSIIELMEGNLAEP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHCCCCCHHHHHHHHHHCCCCCCC
LSLIEIADGAGLSRRQIERLFRQEMGRSPARYYLEIRLDRARHLLVQSSMPVVEVAVACG
HHHHEECCCCCCCHHHHHHHHHHHHCCCCHHEEEEEEEHHHHHHHHHCCCCHHHHHHHHH
FVSASHFSKCYRELYHRSPQQERAERKMTMATARQQAVAA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNRMQIKKRSLVFFMVPQFTMLPFSAAVDTLRIANRMLGYQAYTWRLASLDGEKVYSSCG
CCCCHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHEEEEECCCHHHHHHHCC
IGVEANSSLAEERRHLGGENRPGMVLVCSGIDVEQFNNKSVNAWLRECYNRGVAVGSLCT
CCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCHHHCCCCCHHHHHHHHHHCCCEEHHHHH
GAHVLAQAGLLNGKRCAIHWENLPGFSEAFPQAEVYADLYEIDGNLYTCAGGTASLDMML
HHHHHHHHHCCCCCEEEEEECCCCCHHHHCCHHHHHHHHHHHCCCEEEECCCCHHHHHHH
NLVGEDFGESLVNRICEQHLTDRVRNPHDRQRLPLRARLGVQNAKVLSIIELMEGNLAEP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHCCCCCHHHHHHHHHHCCCCCCC
LSLIEIADGAGLSRRQIERLFRQEMGRSPARYYLEIRLDRARHLLVQSSMPVVEVAVACG
HHHHEECCCCCCCHHHHHHHHHHHHCCCCHHEEEEEEEHHHHHHHHHCCCCHHHHHHHHH
FVSASHFSKCYRELYHRSPQQERAERKMTMATARQQAVAA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]