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The map label for this gene is xynB [H]

Identifier: 209549683

GI number: 209549683

Start: 2148541

End: 2150154

Strand: Reverse

Name: xynB [H]

Synonym: Rleg2_2090

Alternate gene names: 209549683

Gene position: 2150154-2148541 (Counterclockwise)

Preceding gene: 209549684

Following gene: 209549682

Centisome position: 47.38

GC content: 63.07

Gene sequence:

>1614_bases
ATGATCCGCAATCCCATCCTGCCCGGGTTCAACCCCGATCCGTCGATCTGCCGCGTGGGCGCGGACTATTATATCGCGAC
CTCGACCTTCGAATGGTATCCCGGCGTGCAGATCCACCATTCGCGCGACCTGGTGAACTGGACGCTGGTGCGCCGGCCGC
TGGAACGCCGGTCGCAGCTCGACATGCGCGGCAATCCCGACAGCTGCGGCATCTGGGCGCCGTGTCTTTCCTATGCCGAC
GGGCAGTTCTGGCTTGTTTATACCGACGTCAAGCGCTTCGATGGCAGTTTCAAGGACGCGCCGAACTATATCGTCACCGC
GCCTGCCATCGAGGCCGAATGGTCCGAGCCGGTGTACGTCAATTCCTCCGGCTTCGATCCCTCGCTGTTCCACGACGATG
ACGGCCGCAAGTGGTTCCTCAACATGCAGTGGAACCACCGCACCGAAAGCTATGGCGGCTCGCCGAAATCGCCGGCCTTC
GACGGTATCCTGCTGCAGGAATGGGACCCGGTGACGAAGGCCCTGAAAGGCCCGCTCCGCAATATTTTCGCCGGCAGTCC
GCTCGGCCTGGTCGAGGGCCCGCACCTCTTCAAGCGCAATGGCTGGTACTATCTGACGACCGCGGAAGGCGGTACCGGCT
ATGACCACGCCGTCACCATGGCGCGCTCGCGCCGCATCGAAGGCCCTTACGAGATGCATCCTAACATGCATCTCATCACC
TCCAAGGATCATCCGGGCGCGGTGCTGCAGCGGGCAGGGCACGGCCAATATGTCGAGACGCCGGACGGTGAGGCCTATCA
CACCCATCTCTGCGGCCGGCCTCTACCGCCGAAGCGGCGCTGCACGCTGGGGCGAGAGACGAGCCTGCAGAAATGCGTCT
GGCGCGACGATGACTGGCTCTATCTCGAAAATGGCACCTCGGTGCCCGATGTCGATGTGCCCGGCCTCTTCGGCGCCGTG
CCTGCGGAAAAGCCGATGCGCAGCGAATACAGCTTCGATGGCGGCACCCTGCTGGCCGATTTCCAATGGCTGCGCACGCC
CGAGCCCGAGCGCATCTTCAACCTGACGGACCGCCCCGGCCATCTCAGGCTGATTGCGCGCGAAAGCATCGGCTCCTGGT
TCGAGCAGGCTTTGGTTGCCCGCCGGCAGGAGCATCACAGCTTCCGCGCCGAGACCGTGGTCGAGTTCTCGCCCGACACT
TATCAGCAGGTCGCGGGGCTGACGCATTATTACAACCGGCATAAATTCCATGCCGTTGCCGTGACGCTGCACGAAACACT
CGGCCGCTGCGTGACGATCCTCTCCTGCAATGGCGATTATCCGAACGGACGCCTGAGCTTCCCCGCCGAAAGCGATGTGG
CGATCGCTGCTGAGGGCCGTGTCCAGCTCGCCATGGAAATTCGCGAGAACGATCTGCAATTCTTCTGGCAGACCGAAGGC
AAGGGCGCCTGGCAGCCGATCGGCCCGATCCTCGACGCCGGCATGATTTCCGACGAGGGCGGGCGCGGCGAACACGGTTC
CTTCACCGGCGCCTTCGCTGGCGTGTTTGCCTTCGATACGTCGGGACGCGGGAAGATCGCGGATTTCGACTGGTTCAACT
ATGACGAATTGTGA

Upstream 100 bases:

>100_bases
TGGGTTCCTGTGACGAGCACAGGAATGAGGGTGGGGAGGTGAAGTAACCGCCCACATTTGACGTACGTACCACAACAACA
ATCTCGGAGGAGGCCGCATC

Downstream 100 bases:

>100_bases
GGGAGCACTGCTCCCCGCCCGCTCACGCCTTTGAGGTTTCGACCTAGCAAAAAAGAAAGCCGGCGCAGTGGCCGGCTAAG
ACGAACGCGGCTGAACAGGG

Product: alpha-N-arabinofuranosidase

Products: NA

Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]

Number of amino acids: Translated: 537; Mature: 537

Protein sequence:

>537_residues
MIRNPILPGFNPDPSICRVGADYYIATSTFEWYPGVQIHHSRDLVNWTLVRRPLERRSQLDMRGNPDSCGIWAPCLSYAD
GQFWLVYTDVKRFDGSFKDAPNYIVTAPAIEAEWSEPVYVNSSGFDPSLFHDDDGRKWFLNMQWNHRTESYGGSPKSPAF
DGILLQEWDPVTKALKGPLRNIFAGSPLGLVEGPHLFKRNGWYYLTTAEGGTGYDHAVTMARSRRIEGPYEMHPNMHLIT
SKDHPGAVLQRAGHGQYVETPDGEAYHTHLCGRPLPPKRRCTLGRETSLQKCVWRDDDWLYLENGTSVPDVDVPGLFGAV
PAEKPMRSEYSFDGGTLLADFQWLRTPEPERIFNLTDRPGHLRLIARESIGSWFEQALVARRQEHHSFRAETVVEFSPDT
YQQVAGLTHYYNRHKFHAVAVTLHETLGRCVTILSCNGDYPNGRLSFPAESDVAIAAEGRVQLAMEIRENDLQFFWQTEG
KGAWQPIGPILDAGMISDEGGRGEHGSFTGAFAGVFAFDTSGRGKIADFDWFNYDEL

Sequences:

>Translated_537_residues
MIRNPILPGFNPDPSICRVGADYYIATSTFEWYPGVQIHHSRDLVNWTLVRRPLERRSQLDMRGNPDSCGIWAPCLSYAD
GQFWLVYTDVKRFDGSFKDAPNYIVTAPAIEAEWSEPVYVNSSGFDPSLFHDDDGRKWFLNMQWNHRTESYGGSPKSPAF
DGILLQEWDPVTKALKGPLRNIFAGSPLGLVEGPHLFKRNGWYYLTTAEGGTGYDHAVTMARSRRIEGPYEMHPNMHLIT
SKDHPGAVLQRAGHGQYVETPDGEAYHTHLCGRPLPPKRRCTLGRETSLQKCVWRDDDWLYLENGTSVPDVDVPGLFGAV
PAEKPMRSEYSFDGGTLLADFQWLRTPEPERIFNLTDRPGHLRLIARESIGSWFEQALVARRQEHHSFRAETVVEFSPDT
YQQVAGLTHYYNRHKFHAVAVTLHETLGRCVTILSCNGDYPNGRLSFPAESDVAIAAEGRVQLAMEIRENDLQFFWQTEG
KGAWQPIGPILDAGMISDEGGRGEHGSFTGAFAGVFAFDTSGRGKIADFDWFNYDEL
>Mature_537_residues
MIRNPILPGFNPDPSICRVGADYYIATSTFEWYPGVQIHHSRDLVNWTLVRRPLERRSQLDMRGNPDSCGIWAPCLSYAD
GQFWLVYTDVKRFDGSFKDAPNYIVTAPAIEAEWSEPVYVNSSGFDPSLFHDDDGRKWFLNMQWNHRTESYGGSPKSPAF
DGILLQEWDPVTKALKGPLRNIFAGSPLGLVEGPHLFKRNGWYYLTTAEGGTGYDHAVTMARSRRIEGPYEMHPNMHLIT
SKDHPGAVLQRAGHGQYVETPDGEAYHTHLCGRPLPPKRRCTLGRETSLQKCVWRDDDWLYLENGTSVPDVDVPGLFGAV
PAEKPMRSEYSFDGGTLLADFQWLRTPEPERIFNLTDRPGHLRLIARESIGSWFEQALVARRQEHHSFRAETVVEFSPDT
YQQVAGLTHYYNRHKFHAVAVTLHETLGRCVTILSCNGDYPNGRLSFPAESDVAIAAEGRVQLAMEIRENDLQFFWQTEG
KGAWQPIGPILDAGMISDEGGRGEHGSFTGAFAGVFAFDTSGRGKIADFDWFNYDEL

Specific function: Unknown

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=549, Percent_Identity=45.1730418943534, Blast_Score=444, Evalue=1e-126,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37 [H]

Molecular weight: Translated: 60612; Mature: 60612

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRNPILPGFNPDPSICRVGADYYIATSTFEWYPGVQIHHSRDLVNWTLVRRPLERRSQL
CCCCCCCCCCCCCCCCEEECCCEEEEECEEEECCCEEEECCCCCHHHHHHHHHHHHHHCC
DMRGNPDSCGIWAPCLSYADGQFWLVYTDVKRFDGSFKDAPNYIVTAPAIEAEWSEPVYV
CCCCCCCCCCCHHHHHHCCCCCEEEEEEEHHHCCCCCCCCCCEEEECCCCCCCCCCCEEE
NSSGFDPSLFHDDDGRKWFLNMQWNHRTESYGGSPKSPAFDGILLQEWDPVTKALKGPLR
ECCCCCCCCEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHH
NIFAGSPLGLVEGPHLFKRNGWYYLTTAEGGTGYDHAVTMARSRRIEGPYEMHPNMHLIT
HHHCCCCCCCCCCCCEEECCCEEEEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCEEEEE
SKDHPGAVLQRAGHGQYVETPDGEAYHTHLCGRPLPPKRRCTLGRETSLQKCVWRDDDWL
CCCCCCHHHHHCCCCCEEECCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHEECCCCEE
YLENGTSVPDVDVPGLFGAVPAEKPMRSEYSFDGGTLLADFQWLRTPEPERIFNLTDRPG
EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHCCCCHHHEEECCCCCC
HLRLIARESIGSWFEQALVARRQEHHSFRAETVVEFSPDTYQQVAGLTHYYNRHKFHAVA
EEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCEEEEEE
VTLHETLGRCVTILSCNGDYPNGRLSFPAESDVAIAAEGRVQLAMEIRENDLQFFWQTEG
EEHHHHHCCEEEEEECCCCCCCCEEECCCCCCEEEEECCCEEEEEEEECCCEEEEEEECC
KGAWQPIGPILDAGMISDEGGRGEHGSFTGAFAGVFAFDTSGRGKIADFDWFNYDEL
CCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHEEEEEEEECCCCCCEECCCCCCCCCC
>Mature Secondary Structure
MIRNPILPGFNPDPSICRVGADYYIATSTFEWYPGVQIHHSRDLVNWTLVRRPLERRSQL
CCCCCCCCCCCCCCCCEEECCCEEEEECEEEECCCEEEECCCCCHHHHHHHHHHHHHHCC
DMRGNPDSCGIWAPCLSYADGQFWLVYTDVKRFDGSFKDAPNYIVTAPAIEAEWSEPVYV
CCCCCCCCCCCHHHHHHCCCCCEEEEEEEHHHCCCCCCCCCCEEEECCCCCCCCCCCEEE
NSSGFDPSLFHDDDGRKWFLNMQWNHRTESYGGSPKSPAFDGILLQEWDPVTKALKGPLR
ECCCCCCCCEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHH
NIFAGSPLGLVEGPHLFKRNGWYYLTTAEGGTGYDHAVTMARSRRIEGPYEMHPNMHLIT
HHHCCCCCCCCCCCCEEECCCEEEEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCEEEEE
SKDHPGAVLQRAGHGQYVETPDGEAYHTHLCGRPLPPKRRCTLGRETSLQKCVWRDDDWL
CCCCCCHHHHHCCCCCEEECCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHEECCCCEE
YLENGTSVPDVDVPGLFGAVPAEKPMRSEYSFDGGTLLADFQWLRTPEPERIFNLTDRPG
EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHCCCCHHHEEECCCCCC
HLRLIARESIGSWFEQALVARRQEHHSFRAETVVEFSPDTYQQVAGLTHYYNRHKFHAVA
EEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCEEEEEE
VTLHETLGRCVTILSCNGDYPNGRLSFPAESDVAIAAEGRVQLAMEIRENDLQFFWQTEG
EEHHHHHCCEEEEEECCCCCCCCEEECCCCCCEEEEECCCEEEEEEEECCCEEEEEEECC
KGAWQPIGPILDAGMISDEGGRGEHGSFTGAFAGVFAFDTSGRGKIADFDWFNYDEL
CCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHEEEEEEEECCCCCCEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]