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The map label for this gene is deoR [H]

Identifier: 209549623

GI number: 209549623

Start: 2091708

End: 2092658

Strand: Reverse

Name: deoR [H]

Synonym: Rleg2_2030

Alternate gene names: 209549623

Gene position: 2092658-2091708 (Counterclockwise)

Preceding gene: 209549624

Following gene: 209549619

Centisome position: 46.11

GC content: 61.72

Gene sequence:

>951_bases
ATGACTCGCCTCAACGAACTCCGCCTCATTTCAAGGGTCGCCCAGATGTACCATATCGAGGGGCGGCGGCAGGCGGAGAT
CGCACAGCACCTTCGGCTGTCGCAGGCGACGGTGTCGCGCATGCTTAAGCGCGCCGAGGCTGAAGATATCGTGCGAACCA
GCGTGATCCCTCCCGTCGGCACCTATAGCGAACTCGAGAGCGCGCTTCGCGAGAAATACGATCTGCCGGAGGCGATCGTC
GTCGAGTGCACGGAAGATCGGGACGGCGCCATCATGGCCCGCATCGGCGAGGCAGCGGCGCATCTCCTGGAGGTGACGCT
TGCGCCGGGGGAGATCATCGGCGTTTCGAGCTGGAGCCAGACCATTTTCAAGATGGTCGAGAACATTCATCCGCAGAAGA
GTGCGCAGGTGAAATATGTCGTCCAGACCCTTGGAGGCATGGGCGATCCTTCGGTGCAGACGCATGCGACGCAGCTGACC
ACGCGGCTTGCGCGGCTGACCGGCGCCGAGCCGAAACTGCTCCCCGTGCAGGGCGTAACGTCATCCCGAGAAGCAAAACT
TCTGATGCAGGCCGATCCGTACGTCCGCGAGACGATGGACCTGTTCGGCAGCATAACGCTGGCGATCGTCGGAATCGGAG
CCGTCGAACCCTCCGAACTTCTCGCACGGTCCGGCAACATCTTTTCGTCCCGCGAACTGTCCGATCTCGCCGAAGCGGGC
GCCGTCGGCGATATCTCGCTGCGCTTCTTCGATAAAAACGGCAAGCCGGTCAAGACGCCCCTTGATGATCGGGTCATCGG
GCTTCCACTTGAGGATCTCGAGCGGGTGGAGCGGGTTATCGCTCTTGCCGGCGGGTCGAAAAAGACTGACGCTATCGCCG
GTGCGCTGCGCGTGGGGGTGATCGACATGCTGGTGACGGATAAGTTTACGGCGCAGCGATTGATTGAGTGA

Upstream 100 bases:

>100_bases
TCGAGCGGGGCTGCTCGATAGCTGGAATGATGCGCTCGCCCGCTCGACGGCCCGCGAAACAAAGGCTAAAGGTGAATAAA
AATTCACTCTGGGATTAGCG

Downstream 100 bases:

>100_bases
TGAGGTCGGCGGCTGCCGCGGCGGTGGCTGGAGTGGGAGCGCCCGCCTCGTCCTTCGAGGCTTCGCCCTCTGGGCTACGC
ACCTCAGGATGAGGCTCTCT

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MTRLNELRLISRVAQMYHIEGRRQAEIAQHLRLSQATVSRMLKRAEAEDIVRTSVIPPVGTYSELESALREKYDLPEAIV
VECTEDRDGAIMARIGEAAAHLLEVTLAPGEIIGVSSWSQTIFKMVENIHPQKSAQVKYVVQTLGGMGDPSVQTHATQLT
TRLARLTGAEPKLLPVQGVTSSREAKLLMQADPYVRETMDLFGSITLAIVGIGAVEPSELLARSGNIFSSRELSDLAEAG
AVGDISLRFFDKNGKPVKTPLDDRVIGLPLEDLERVERVIALAGGSKKTDAIAGALRVGVIDMLVTDKFTAQRLIE

Sequences:

>Translated_316_residues
MTRLNELRLISRVAQMYHIEGRRQAEIAQHLRLSQATVSRMLKRAEAEDIVRTSVIPPVGTYSELESALREKYDLPEAIV
VECTEDRDGAIMARIGEAAAHLLEVTLAPGEIIGVSSWSQTIFKMVENIHPQKSAQVKYVVQTLGGMGDPSVQTHATQLT
TRLARLTGAEPKLLPVQGVTSSREAKLLMQADPYVRETMDLFGSITLAIVGIGAVEPSELLARSGNIFSSRELSDLAEAG
AVGDISLRFFDKNGKPVKTPLDDRVIGLPLEDLERVERVIALAGGSKKTDAIAGALRVGVIDMLVTDKFTAQRLIE
>Mature_315_residues
TRLNELRLISRVAQMYHIEGRRQAEIAQHLRLSQATVSRMLKRAEAEDIVRTSVIPPVGTYSELESALREKYDLPEAIVV
ECTEDRDGAIMARIGEAAAHLLEVTLAPGEIIGVSSWSQTIFKMVENIHPQKSAQVKYVVQTLGGMGDPSVQTHATQLTT
RLARLTGAEPKLLPVQGVTSSREAKLLMQADPYVRETMDLFGSITLAIVGIGAVEPSELLARSGNIFSSRELSDLAEAGA
VGDISLRFFDKNGKPVKTPLDDRVIGLPLEDLERVERVIALAGGSKKTDAIAGALRVGVIDMLVTDKFTAQRLIE

Specific function: Negative regulator of the dra-nupC-pdp operon. DeoR binds cooperatively to the operator DNA, which consists of a palindrome and a direct repeat sequence located 3' to the palindrome [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI87082414, Length=310, Percent_Identity=30.9677419354839, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1787791, Length=305, Percent_Identity=29.8360655737705, Blast_Score=115, Evalue=5e-27,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 34435; Mature: 34304

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRLNELRLISRVAQMYHIEGRRQAEIAQHLRLSQATVSRMLKRAEAEDIVRTSVIPPVG
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TYSELESALREKYDLPEAIVVECTEDRDGAIMARIGEAAAHLLEVTLAPGEIIGVSSWSQ
CHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHEECCCCEEECCHHHH
TIFKMVENIHPQKSAQVKYVVQTLGGMGDPSVQTHATQLTTRLARLTGAEPKLLPVQGVT
HHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCC
SSREAKLLMQADPYVRETMDLFGSITLAIVGIGAVEPSELLARSGNIFSSRELSDLAEAG
CCCHHEEEECCCHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHCCCCCCHHHHHHHHHCC
AVGDISLRFFDKNGKPVKTPLDDRVIGLPLEDLERVERVIALAGGSKKTDAIAGALRVGV
CCCCEEEEEECCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
IDMLVTDKFTAQRLIE
HHHHHHCHHHHHHHCC
>Mature Secondary Structure 
TRLNELRLISRVAQMYHIEGRRQAEIAQHLRLSQATVSRMLKRAEAEDIVRTSVIPPVG
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TYSELESALREKYDLPEAIVVECTEDRDGAIMARIGEAAAHLLEVTLAPGEIIGVSSWSQ
CHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHEECCCCEEECCHHHH
TIFKMVENIHPQKSAQVKYVVQTLGGMGDPSVQTHATQLTTRLARLTGAEPKLLPVQGVT
HHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCC
SSREAKLLMQADPYVRETMDLFGSITLAIVGIGAVEPSELLARSGNIFSSRELSDLAEAG
CCCHHEEEECCCHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHCCCCCCHHHHHHHHHCC
AVGDISLRFFDKNGKPVKTPLDDRVIGLPLEDLERVERVIALAGGSKKTDAIAGALRVGV
CCCCEEEEEECCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
IDMLVTDKFTAQRLIE
HHHHHHCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8550462; 8867804; 9384377; 10074062; 10714997 [H]