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The map label for this gene is ycbB [H]

Identifier: 209549608

GI number: 209549608

Start: 2074381

End: 2076291

Strand: Reverse

Name: ycbB [H]

Synonym: Rleg2_2015

Alternate gene names: 209549608

Gene position: 2076291-2074381 (Counterclockwise)

Preceding gene: 209549610

Following gene: 209549606

Centisome position: 45.75

GC content: 62.43

Gene sequence:

>1911_bases
ATGACGTTCGTTTTGAAAAGCGCGGCATCCGCATTGGCAATTTCCTGCGGCGTGGCGGCTATGAGTGCCGCACCCGCGCA
TGCTTATACATTGATGGACATGCTGCGCGGCGACAAGCAGCGGACCCAGAGCACCATCTTCATGGATCAGGCGCCCGGCC
GGCCGGTGCCGCGCGGCGCGGTTGGCGGCTCGCTCGGTGGACTCGATCCGGAGGCGCCGCTGCCGAAGGTAAGCGGCCCG
CGTTATTACACCTACAAAGCCGAGACGTTGCAGTTCGTCGATACCGGCAAGTTCGCCGATCCCGTCGTCACCGGCGCGGT
CGCCGATGTTTCGGCGAGCGGCGATGCCAGCGCCGAACCCGCAGTCCAGCGCCGTTTCCTGGCGCAGGCCAAGGTGCGCG
CCAATGCGGACGTCGCAAAGGTGCTCGAAGCCTATTACGGCGACAGCCGCAATCCGCTCGTCTGGGTCGATGGCAACCAG
ATCAACGACCGCGCCAAGTCGGCGATGGCGACACTTGCCGATGCGGCCTCCGTCGGTCTCGACCCTGCCGATTACGCGGT
CCAGGCGCCGGCGATTGACCCGGCCAATCCCGATCCCACCTTCCGCGACCGGGCGCTGACGCAGTTTGAGCTCGAACTCT
CCGCCAAGGTGCTGGCTTTCGTGCAGGACACCGTGCGTGGCCGCATCGATCCGAACAAGATCTCCGGCTATCACGACTTT
CAGCGCAAGGCGGTCAATCTGACGTCGGTGCTGAAGCTTGCCCGCATGAGCCCCGATGTCGGCGCCTACATCGCCAGTCG
CTCGCCCGATGGTGCTCAGTTTGAGGCACTGAAGGCGGAGCTTGCCAAGCTTCGCGCCGTTGACGGCGGCAACGAGGAGC
GAATCGTCGTTTCGCTCGACAAGTCGCTGAAGCCTGGCGACAGCTCGCCCGAGATTGCCAATATCGTCAAGGCGATCGGC
AAGCATGGGTCCGAAACCTTGAAGACCGATCACGCGGCAACGCTTGCCGCTTACGCAGGCAGCACCGATTATTCTCCCGA
TATCGTCTCGCTGGTCGAGGCCTTCCAGCAAGAGCGCGGACTGAAAGCCGATGGCGTCATCGGCCAGGCGACTGTGCGCG
CCATGACCGGCGGCGATACCAATGCCTCGAAGATCGACAAGCTCGTCGTCGCCATGGAGCAGGCGCGCTGGCTGCCGGAG
GATCTCGGTTCCCGTTACGTGATGATCAACCAGCCGGCCTTCATGGTCTATTACCACAATGACGGCAAGGAACAGCTGTC
GATGCGGGTGGTTGTCGGCGGCAAGAACAATCAGACCTATTTCTTCGACGACGAGATCGAGACGGTGGAGTTCAACCCGT
TCTGGGGTGTGCCGCAGTCGATCATCATCAACGAGATGCTGCCGAAGCTGCGTTCGGATCCGAACTATCTCGACCAGCTC
GGCTATGAAGTCGAGGTGAACGGCCATGCCGTCGCCTCGTCGAGCGTCGATTGGTACGGCTCGACCAATAACGTCTCGGT
GCGCCAGCCGCCAAGCAGCGACAATGCGCTCGGTGAACTGAAGATCCTGTTCCCGAACAGCCACGCGATCTACATGCACG
ACACCCCGTCGAAGAGCTTCTTCAAGCGCGACATGCGGGCTTTGAGCCACGGCTGCGTGCGCCTTGCCAATCCGCGTGCG
ATGGCAGCCGCCGTGCTCGGCACGACGGTCGACGACGTCGCCAAGCAGATCGCTACCGGGCAGAACCATGCTGTGAAGGT
GCCGCAGAAAATCCCGGTCTACGTTTCCTACTTCACCGCCTGGCCGAACAAGGACGGCGTGGTGGAATATTTCGACGACG
TTTATGGCCGCGACGGCTATGTCGACAAGGCCTTCGACGCGACGACAAAGGCGCGTGGCGCGCAGATCTGA

Upstream 100 bases:

>100_bases
CCGGCGCTGGCGGCGCAGGCCGGTTTCTGATCAATGAGCCGGACGCTGAGTTTCGCGGGATTTGAGCTGAGAACAGCATG
ACACCGGGACTGGAAGATAT

Downstream 100 bases:

>100_bases
CGTAGGTTTTATTGGATTATGAGCGGGCGGCCCGTGGGCCGCCCGTTTTGTTTGGACGAGATGCCAACGACGCCGTTCTG
GGCTTAAGCCTAGCTAGGAA

Product: peptidoglycan-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 636; Mature: 635

Protein sequence:

>636_residues
MTFVLKSAASALAISCGVAAMSAAPAHAYTLMDMLRGDKQRTQSTIFMDQAPGRPVPRGAVGGSLGGLDPEAPLPKVSGP
RYYTYKAETLQFVDTGKFADPVVTGAVADVSASGDASAEPAVQRRFLAQAKVRANADVAKVLEAYYGDSRNPLVWVDGNQ
INDRAKSAMATLADAASVGLDPADYAVQAPAIDPANPDPTFRDRALTQFELELSAKVLAFVQDTVRGRIDPNKISGYHDF
QRKAVNLTSVLKLARMSPDVGAYIASRSPDGAQFEALKAELAKLRAVDGGNEERIVVSLDKSLKPGDSSPEIANIVKAIG
KHGSETLKTDHAATLAAYAGSTDYSPDIVSLVEAFQQERGLKADGVIGQATVRAMTGGDTNASKIDKLVVAMEQARWLPE
DLGSRYVMINQPAFMVYYHNDGKEQLSMRVVVGGKNNQTYFFDDEIETVEFNPFWGVPQSIIINEMLPKLRSDPNYLDQL
GYEVEVNGHAVASSSVDWYGSTNNVSVRQPPSSDNALGELKILFPNSHAIYMHDTPSKSFFKRDMRALSHGCVRLANPRA
MAAAVLGTTVDDVAKQIATGQNHAVKVPQKIPVYVSYFTAWPNKDGVVEYFDDVYGRDGYVDKAFDATTKARGAQI

Sequences:

>Translated_636_residues
MTFVLKSAASALAISCGVAAMSAAPAHAYTLMDMLRGDKQRTQSTIFMDQAPGRPVPRGAVGGSLGGLDPEAPLPKVSGP
RYYTYKAETLQFVDTGKFADPVVTGAVADVSASGDASAEPAVQRRFLAQAKVRANADVAKVLEAYYGDSRNPLVWVDGNQ
INDRAKSAMATLADAASVGLDPADYAVQAPAIDPANPDPTFRDRALTQFELELSAKVLAFVQDTVRGRIDPNKISGYHDF
QRKAVNLTSVLKLARMSPDVGAYIASRSPDGAQFEALKAELAKLRAVDGGNEERIVVSLDKSLKPGDSSPEIANIVKAIG
KHGSETLKTDHAATLAAYAGSTDYSPDIVSLVEAFQQERGLKADGVIGQATVRAMTGGDTNASKIDKLVVAMEQARWLPE
DLGSRYVMINQPAFMVYYHNDGKEQLSMRVVVGGKNNQTYFFDDEIETVEFNPFWGVPQSIIINEMLPKLRSDPNYLDQL
GYEVEVNGHAVASSSVDWYGSTNNVSVRQPPSSDNALGELKILFPNSHAIYMHDTPSKSFFKRDMRALSHGCVRLANPRA
MAAAVLGTTVDDVAKQIATGQNHAVKVPQKIPVYVSYFTAWPNKDGVVEYFDDVYGRDGYVDKAFDATTKARGAQI
>Mature_635_residues
TFVLKSAASALAISCGVAAMSAAPAHAYTLMDMLRGDKQRTQSTIFMDQAPGRPVPRGAVGGSLGGLDPEAPLPKVSGPR
YYTYKAETLQFVDTGKFADPVVTGAVADVSASGDASAEPAVQRRFLAQAKVRANADVAKVLEAYYGDSRNPLVWVDGNQI
NDRAKSAMATLADAASVGLDPADYAVQAPAIDPANPDPTFRDRALTQFELELSAKVLAFVQDTVRGRIDPNKISGYHDFQ
RKAVNLTSVLKLARMSPDVGAYIASRSPDGAQFEALKAELAKLRAVDGGNEERIVVSLDKSLKPGDSSPEIANIVKAIGK
HGSETLKTDHAATLAAYAGSTDYSPDIVSLVEAFQQERGLKADGVIGQATVRAMTGGDTNASKIDKLVVAMEQARWLPED
LGSRYVMINQPAFMVYYHNDGKEQLSMRVVVGGKNNQTYFFDDEIETVEFNPFWGVPQSIIINEMLPKLRSDPNYLDQLG
YEVEVNGHAVASSSVDWYGSTNNVSVRQPPSSDNALGELKILFPNSHAIYMHDTPSKSFFKRDMRALSHGCVRLANPRAM
AAAVLGTTVDDVAKQIATGQNHAVKVPQKIPVYVSYFTAWPNKDGVVEYFDDVYGRDGYVDKAFDATTKARGAQI

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=356, Percent_Identity=34.2696629213483, Blast_Score=173, Evalue=2e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 68618; Mature: 68487

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFVLKSAASALAISCGVAAMSAAPAHAYTLMDMLRGDKQRTQSTIFMDQAPGRPVPRGA
CEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHEEEEECCCCCCCCCCC
VGGSLGGLDPEAPLPKVSGPRYYTYKAETLQFVDTGKFADPVVTGAVADVSASGDASAEP
CCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHCHHHCCCCCCCCCCCH
AVQRRFLAQAKVRANADVAKVLEAYYGDSRNPLVWVDGNQINDRAKSAMATLADAASVGL
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCC
DPADYAVQAPAIDPANPDPTFRDRALTQFELELSAKVLAFVQDTVRGRIDPNKISGYHDF
CCHHCEEECCCCCCCCCCCCHHHCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHCCCHHHH
QRKAVNLTSVLKLARMSPDVGAYIASRSPDGAQFEALKAELAKLRAVDGGNEERIVVSLD
HHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEC
KSLKPGDSSPEIANIVKAIGKHGSETLKTDHAATLAAYAGSTDYSPDIVSLVEAFQQERG
CCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
LKADGVIGQATVRAMTGGDTNASKIDKLVVAMEQARWLPEDLGSRYVMINQPAFMVYYHN
CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHCCCEEEEECCEEEEEEEC
DGKEQLSMRVVVGGKNNQTYFFDDEIETVEFNPFWGVPQSIIINEMLPKLRSDPNYLDQL
CCCCEEEEEEEEECCCCCEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHC
GYEVEVNGHAVASSSVDWYGSTNNVSVRQPPSSDNALGELKILFPNSHAIYMHDTPSKSF
CCEEEECCEEEECCCCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCEEEEECCCCHHH
FKRDMRALSHGCVRLANPRAMAAAVLGTTVDDVAKQIATGQNHAVKVPQKIPVYVSYFTA
HHHHHHHHHHCCEEECCCHHHHHHHHHCCHHHHHHHHHCCCCCEEECCCCCCEEEEEEEE
WPNKDGVVEYFDDVYGRDGYVDKAFDATTKARGAQI
CCCCCCHHHHHHHHCCCCCCCCCHHCCHHCCCCCCC
>Mature Secondary Structure 
TFVLKSAASALAISCGVAAMSAAPAHAYTLMDMLRGDKQRTQSTIFMDQAPGRPVPRGA
EEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHEEEEECCCCCCCCCCC
VGGSLGGLDPEAPLPKVSGPRYYTYKAETLQFVDTGKFADPVVTGAVADVSASGDASAEP
CCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHCHHHCCCCCCCCCCCH
AVQRRFLAQAKVRANADVAKVLEAYYGDSRNPLVWVDGNQINDRAKSAMATLADAASVGL
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCC
DPADYAVQAPAIDPANPDPTFRDRALTQFELELSAKVLAFVQDTVRGRIDPNKISGYHDF
CCHHCEEECCCCCCCCCCCCHHHCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHCCCHHHH
QRKAVNLTSVLKLARMSPDVGAYIASRSPDGAQFEALKAELAKLRAVDGGNEERIVVSLD
HHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEC
KSLKPGDSSPEIANIVKAIGKHGSETLKTDHAATLAAYAGSTDYSPDIVSLVEAFQQERG
CCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
LKADGVIGQATVRAMTGGDTNASKIDKLVVAMEQARWLPEDLGSRYVMINQPAFMVYYHN
CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHCCCEEEEECCEEEEEEEC
DGKEQLSMRVVVGGKNNQTYFFDDEIETVEFNPFWGVPQSIIINEMLPKLRSDPNYLDQL
CCCCEEEEEEEEECCCCCEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHC
GYEVEVNGHAVASSSVDWYGSTNNVSVRQPPSSDNALGELKILFPNSHAIYMHDTPSKSF
CCEEEECCEEEECCCCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCEEEEECCCCHHH
FKRDMRALSHGCVRLANPRAMAAAVLGTTVDDVAKQIATGQNHAVKVPQKIPVYVSYFTA
HHHHHHHHHHCCEEECCCHHHHHHHHHCCHHHHHHHHHCCCCCEEECCCCCCEEEEEEEE
WPNKDGVVEYFDDVYGRDGYVDKAFDATTKARGAQI
CCCCCCHHHHHHHHCCCCCCCCCHHCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]