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The map label for this gene is ydeE [H]

Identifier: 209549550

GI number: 209549550

Start: 2000136

End: 2000987

Strand: Reverse

Name: ydeE [H]

Synonym: Rleg2_1956

Alternate gene names: 209549550

Gene position: 2000987-2000136 (Counterclockwise)

Preceding gene: 209549551

Following gene: 209549546

Centisome position: 44.09

GC content: 60.09

Gene sequence:

>852_bases
ATGAATGGCGAAACGGCATGGGCACTTTATGAAAGCCGTCTGAGACGGGTTTCGGCCTATATTCACGACCACCTCGACGA
GGAGCTGGATATGGCGCGCCTTGCCGAGATCGCCTGCCTGTCGAGTTATCACTGGCACAGGATCTACCGGGCGATTTACG
GCGAGACGCTGGCGGCCACCGTCAAGCGGCTGCGGCTGCATCGCGCAGCGGGCGAGATCGTCGGCACGGAGCTTGCCGTC
AGCGAGATTGCAAAACGATCAGGCTATCCCAACCTCCAATCCTTCAATCGCATTTTCAAGTCGGTCTATGGCATGCCGCC
GGCCCGCTACCGGAAAGAGGGAAGCCACACAGCCTTCCAACCCTCACCTAAGGGAAAGACAAAAGCCATGTTCGACGTGA
CCATACGTGAGATCGCACCGACGGAGCTGATCGGTGTCGCCCATACCGGTTCCTATATGCAGATCGGCAAAGCCTTCGAA
ACATTGTTCGGCACGCTTTACGCGCGCGGTCTCGCCAGGCCCGAGATGCGGATGATCGGCGTCTATCTCGACGATCCCGA
CATCGTGCCGGCCGAAAAGCTGCGCTCGATCGCCTGCGTCACCGGCTCTGCCGACGTCCCGGCCGAAGCGCCGTTCGAGC
GGCGCACCATCGACGGCGGCGACTATGCGGTGCTGCGCCACAAAGGCCCCTATGCCGACATGCACAAGGCCTATCAGTGG
CTTTATGCGGAATGGCTGCCCAAATCGGGACGGCAGCTGAAGGACAGAGTCATGTTCGAGGAATATCTCAACAATCCGCG
CGACGTGCCGCCGACCGAGTTGATGACGGATATCCATATGCCGCTCGCCTGA

Upstream 100 bases:

>100_bases
CTTCGAGGCCCCTGTTGGGTGCACGAATCCGGCAGGTCAGCAGGATTTGTCAAATCGGGATATGGTTCTCTGCAGTCGAT
CGATTTGCATGAGGTTTGAC

Downstream 100 bases:

>100_bases
GGGCTGACATCCCGGCGCGGCCACATTGGAGCCGCGCCGGCGGCGATCAGGCCGCCTGCATCGTCTTGCCGGCCTCGTCA
TCCAGCGCATTGGCGCGCTT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MNGETAWALYESRLRRVSAYIHDHLDEELDMARLAEIACLSSYHWHRIYRAIYGETLAATVKRLRLHRAAGEIVGTELAV
SEIAKRSGYPNLQSFNRIFKSVYGMPPARYRKEGSHTAFQPSPKGKTKAMFDVTIREIAPTELIGVAHTGSYMQIGKAFE
TLFGTLYARGLARPEMRMIGVYLDDPDIVPAEKLRSIACVTGSADVPAEAPFERRTIDGGDYAVLRHKGPYADMHKAYQW
LYAEWLPKSGRQLKDRVMFEEYLNNPRDVPPTELMTDIHMPLA

Sequences:

>Translated_283_residues
MNGETAWALYESRLRRVSAYIHDHLDEELDMARLAEIACLSSYHWHRIYRAIYGETLAATVKRLRLHRAAGEIVGTELAV
SEIAKRSGYPNLQSFNRIFKSVYGMPPARYRKEGSHTAFQPSPKGKTKAMFDVTIREIAPTELIGVAHTGSYMQIGKAFE
TLFGTLYARGLARPEMRMIGVYLDDPDIVPAEKLRSIACVTGSADVPAEAPFERRTIDGGDYAVLRHKGPYADMHKAYQW
LYAEWLPKSGRQLKDRVMFEEYLNNPRDVPPTELMTDIHMPLA
>Mature_283_residues
MNGETAWALYESRLRRVSAYIHDHLDEELDMARLAEIACLSSYHWHRIYRAIYGETLAATVKRLRLHRAAGEIVGTELAV
SEIAKRSGYPNLQSFNRIFKSVYGMPPARYRKEGSHTAFQPSPKGKTKAMFDVTIREIAPTELIGVAHTGSYMQIGKAFE
TLFGTLYARGLARPEMRMIGVYLDDPDIVPAEKLRSIACVTGSADVPAEAPFERRTIDGGDYAVLRHKGPYADMHKAYQW
LYAEWLPKSGRQLKDRVMFEEYLNNPRDVPPTELMTDIHMPLA

Specific function: Transcriptional Activator Of The Superoxide Response Regulon Of E.Coli That Includes At Least 10 Genes Such As Soda, Nfo, Zwf And Micf. Binds The DNA Sequence 5'-Gcacn(7)Caa-3'. It Also Facilitates The Subsequent Binding Of RNA Polymerase To The Micf And

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32109; Mature: 32109

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGETAWALYESRLRRVSAYIHDHLDEELDMARLAEIACLSSYHWHRIYRAIYGETLAAT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKRLRLHRAAGEIVGTELAVSEIAKRSGYPNLQSFNRIFKSVYGMPPARYRKEGSHTAFQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCC
PSPKGKTKAMFDVTIREIAPTELIGVAHTGSYMQIGKAFETLFGTLYARGLARPEMRMIG
CCCCCCCHHHHHHHHHHHCCHHHEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
VYLDDPDIVPAEKLRSIACVTGSADVPAEAPFERRTIDGGDYAVLRHKGPYADMHKAYQW
EEECCCCCCCHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
LYAEWLPKSGRQLKDRVMFEEYLNNPRDVPPTELMTDIHMPLA
HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MNGETAWALYESRLRRVSAYIHDHLDEELDMARLAEIACLSSYHWHRIYRAIYGETLAAT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKRLRLHRAAGEIVGTELAVSEIAKRSGYPNLQSFNRIFKSVYGMPPARYRKEGSHTAFQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCC
PSPKGKTKAMFDVTIREIAPTELIGVAHTGSYMQIGKAFETLFGTLYARGLARPEMRMIG
CCCCCCCHHHHHHHHHHHCCHHHEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
VYLDDPDIVPAEKLRSIACVTGSADVPAEAPFERRTIDGGDYAVLRHKGPYADMHKAYQW
EEECCCCCCCHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
LYAEWLPKSGRQLKDRVMFEEYLNNPRDVPPTELMTDIHMPLA
HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]