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The map label for this gene is ydeF [H]

Identifier: 209549526

GI number: 209549526

Start: 1975777

End: 1977195

Strand: Direct

Name: ydeF [H]

Synonym: Rleg2_1932

Alternate gene names: 209549526

Gene position: 1975777-1977195 (Clockwise)

Preceding gene: 209549524

Following gene: 209549527

Centisome position: 43.54

GC content: 65.05

Gene sequence:

>1419_bases
ATGACAAATTGGCTTCCTGATCTTTCCCGCGGCTCCGGGCCGGTCTATCTCCGGCTTGCCGACAGCATCGAATCCGCCAT
ATCGAGCGGCGCCCTGCCCGCCGGCAGCAAATTGCCGCCGCAACGCAATCTCGCTTACGATATCGGGGTGACAATCGGCA
CGATCGGCCGCGCCTATGCGCTGGTGCACGAGCGCGGCCTGGTCGCCGGCGAAGTCGGGCGCGGCACCTATGTGCTGAAC
CGCTCGGAGACGCCGCCCGGTGAACAGGCCGACCCGTTGACGGTTTCGCTTGGAAGCACCCGCCTCCGCGATGCGCCGGC
AAATAAGATCCGTTTCGACACCACCGCCGCTCCCGACCTCGGCCAGGGCAAGATCATAGCGGGCATCCTGTCCGAGATCG
GTGAGGAGCATCTTGCCGAAATCTCCTCCTATTCCCGGAGTTTTCCGGGCAACTGGTTCGAGGCGGGCCGCCGTTGGCTT
GCTCGCAGCGGCTGGACGCCGGAAGCCGAAAACATCGTGCCGACACTCGGCGCCCACGCGGCCGCGGTCGCCGTCATCGC
CGCCGTCTCGGCCCCGGGCGACAAGATCGTCTTCGAGGACCTCACCTACACGCAGGTCAGCCGCAGCGCCCGCCTGCTCG
GCCGCCGCACGCTGACGGTCGATTCCGATGAACACGGCATGATCCCGGAGGATTTCGAGCGGCTCTGTCAGCAGCAGCAT
CCGAAGCTTGCCTTCCTGATGCCGACCATCCACAATCCCACCGTGACGATCATGCCCTATGAACGGCGTGCGGCAATTGC
TGCAATCGCCAGGAAGCACGGCGTCTGGCTGATCGAGGACGATCTCTACGGCGGCATGGCCGACGATGACACACCGCTCA
TCGCCTCGCTTGCACCCGATCGCACCTTCCTCGTCAGCGGCCTGTCGAAATCCGTCGCCGCCGGCGTGCGCGGCGGCTGG
GTCGCCTGCCCGCCGCATTTTGCCCAGCGCATCAGGGTGACGCACAGGATGATCACCGGTGGCCTGCCCTTCATCCTGGC
GGAAACCTGCGCGCGCCTGGTCGAAAGCGGCACGGCGCACGCGATCCGCAAGCAGAGTGTCGAAGAACTCTCCCGGCGCG
TCCGGCTTGCCCGCGAACAACTGCAAGGCTTCGATTTCCAATCGCACCCGCACGCGCCGTTCCTCTGGCTGAAACTGCCG
GAGCCATGGATGTCCGGCACGTTCAAGAACGCCGCTTACCGCGATGGCGTGCTGGTCGATGACGAGGACGAGTTCAAGGC
GGCGCGTGGCGAGAAAATCTATCACCGCGTTCGCATCGGCTTCTCCTCGCCGAAGTCGGAACAGGAACTGGTCTCCGGCC
TGATGATCCTGCGCCGGCTGCTGGAAAACGGCGGCTCCGCCTATGACGGCGAAATATGA

Upstream 100 bases:

>100_bases
TCTCAGGCAAGGCAGACATTCCAGGAATCCTCTCGGTTATCCGTTGGAATTGACTCTTAATCTTGACAAGGACAATGTGA
CAATATAGTCAATTGTCACC

Downstream 100 bases:

>100_bases
GGTGTTGCAAATACACGTCATAAATCCGAAAAACCGCCGGGGCCTATTCGCGGTGCTTTACCGACCGAACCTCCATGCTA
CCTCTTTGTTATTCCCGCCT

Product: GntR family transcriptional regulator with aminotransferase domain

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 471

Protein sequence:

>472_residues
MTNWLPDLSRGSGPVYLRLADSIESAISSGALPAGSKLPPQRNLAYDIGVTIGTIGRAYALVHERGLVAGEVGRGTYVLN
RSETPPGEQADPLTVSLGSTRLRDAPANKIRFDTTAAPDLGQGKIIAGILSEIGEEHLAEISSYSRSFPGNWFEAGRRWL
ARSGWTPEAENIVPTLGAHAAAVAVIAAVSAPGDKIVFEDLTYTQVSRSARLLGRRTLTVDSDEHGMIPEDFERLCQQQH
PKLAFLMPTIHNPTVTIMPYERRAAIAAIARKHGVWLIEDDLYGGMADDDTPLIASLAPDRTFLVSGLSKSVAAGVRGGW
VACPPHFAQRIRVTHRMITGGLPFILAETCARLVESGTAHAIRKQSVEELSRRVRLAREQLQGFDFQSHPHAPFLWLKLP
EPWMSGTFKNAAYRDGVLVDDEDEFKAARGEKIYHRVRIGFSSPKSEQELVSGLMILRRLLENGGSAYDGEI

Sequences:

>Translated_472_residues
MTNWLPDLSRGSGPVYLRLADSIESAISSGALPAGSKLPPQRNLAYDIGVTIGTIGRAYALVHERGLVAGEVGRGTYVLN
RSETPPGEQADPLTVSLGSTRLRDAPANKIRFDTTAAPDLGQGKIIAGILSEIGEEHLAEISSYSRSFPGNWFEAGRRWL
ARSGWTPEAENIVPTLGAHAAAVAVIAAVSAPGDKIVFEDLTYTQVSRSARLLGRRTLTVDSDEHGMIPEDFERLCQQQH
PKLAFLMPTIHNPTVTIMPYERRAAIAAIARKHGVWLIEDDLYGGMADDDTPLIASLAPDRTFLVSGLSKSVAAGVRGGW
VACPPHFAQRIRVTHRMITGGLPFILAETCARLVESGTAHAIRKQSVEELSRRVRLAREQLQGFDFQSHPHAPFLWLKLP
EPWMSGTFKNAAYRDGVLVDDEDEFKAARGEKIYHRVRIGFSSPKSEQELVSGLMILRRLLENGGSAYDGEI
>Mature_471_residues
TNWLPDLSRGSGPVYLRLADSIESAISSGALPAGSKLPPQRNLAYDIGVTIGTIGRAYALVHERGLVAGEVGRGTYVLNR
SETPPGEQADPLTVSLGSTRLRDAPANKIRFDTTAAPDLGQGKIIAGILSEIGEEHLAEISSYSRSFPGNWFEAGRRWLA
RSGWTPEAENIVPTLGAHAAAVAVIAAVSAPGDKIVFEDLTYTQVSRSARLLGRRTLTVDSDEHGMIPEDFERLCQQQHP
KLAFLMPTIHNPTVTIMPYERRAAIAAIARKHGVWLIEDDLYGGMADDDTPLIASLAPDRTFLVSGLSKSVAAGVRGGWV
ACPPHFAQRIRVTHRMITGGLPFILAETCARLVESGTAHAIRKQSVEELSRRVRLAREQLQGFDFQSHPHAPFLWLKLPE
PWMSGTFKNAAYRDGVLVDDEDEFKAARGEKIYHRVRIGFSSPKSEQELVSGLMILRRLLENGGSAYDGEI

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=175, Percent_Identity=25.7142857142857, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI33469970, Length=175, Percent_Identity=25.7142857142857, Blast_Score=72, Evalue=1e-12,
Organism=Escherichia coli, GI1790797, Length=461, Percent_Identity=25.5965292841649, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1787710, Length=475, Percent_Identity=25.0526315789474, Blast_Score=98, Evalue=1e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 51513; Mature: 51382

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNWLPDLSRGSGPVYLRLADSIESAISSGALPAGSKLPPQRNLAYDIGVTIGTIGRAYA
CCCCCCCCCCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHH
LVHERGLVAGEVGRGTYVLNRSETPPGEQADPLTVSLGSTRLRDAPANKIRFDTTAAPDL
HHHHCCCEEEECCCCEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCC
GQGKIIAGILSEIGEEHLAEISSYSRSFPGNWFEAGRRWLARSGWTPEAENIVPTLGAHA
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
AAVAVIAAVSAPGDKIVFEDLTYTQVSRSARLLGRRTLTVDSDEHGMIPEDFERLCQQQH
HHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHCC
PKLAFLMPTIHNPTVTIMPYERRAAIAAIARKHGVWLIEDDLYGGMADDDTPLIASLAPD
CCEEEEECCCCCCEEEEEECHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEECCCC
RTFLVSGLSKSVAAGVRGGWVACPPHFAQRIRVTHRMITGGLPFILAETCARLVESGTAH
HHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHH
AIRKQSVEELSRRVRLAREQLQGFDFQSHPHAPFLWLKLPEPWMSGTFKNAAYRDGVLVD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHCCCCCCCCCCCCEEEC
DEDEFKAARGEKIYHRVRIGFSSPKSEQELVSGLMILRRLLENGGSAYDGEI
CCHHHHHHCCHHEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TNWLPDLSRGSGPVYLRLADSIESAISSGALPAGSKLPPQRNLAYDIGVTIGTIGRAYA
CCCCCCCCCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHH
LVHERGLVAGEVGRGTYVLNRSETPPGEQADPLTVSLGSTRLRDAPANKIRFDTTAAPDL
HHHHCCCEEEECCCCEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCC
GQGKIIAGILSEIGEEHLAEISSYSRSFPGNWFEAGRRWLARSGWTPEAENIVPTLGAHA
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
AAVAVIAAVSAPGDKIVFEDLTYTQVSRSARLLGRRTLTVDSDEHGMIPEDFERLCQQQH
HHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHCC
PKLAFLMPTIHNPTVTIMPYERRAAIAAIARKHGVWLIEDDLYGGMADDDTPLIASLAPD
CCEEEEECCCCCCEEEEEECHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEECCCC
RTFLVSGLSKSVAAGVRGGWVACPPHFAQRIRVTHRMITGGLPFILAETCARLVESGTAH
HHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHH
AIRKQSVEELSRRVRLAREQLQGFDFQSHPHAPFLWLKLPEPWMSGTFKNAAYRDGVLVD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHCCCCCCCCCCCCEEEC
DEDEFKAARGEKIYHRVRIGFSSPKSEQELVSGLMILRRLLENGGSAYDGEI
CCHHHHHHCCHHEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]