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The map label for this gene is araQ [H]

Identifier: 209549298

GI number: 209549298

Start: 1733825

End: 1734874

Strand: Direct

Name: araQ [H]

Synonym: Rleg2_1701

Alternate gene names: 209549298

Gene position: 1733825-1734874 (Clockwise)

Preceding gene: 209549297

Following gene: 209549299

Centisome position: 38.21

GC content: 62.76

Gene sequence:

>1050_bases
ATGAGCGCGGTCGGCGCCTTTCTCCTGCGCCGCCGCGGCCGCGGCTGGCACTGGACCGACGTGGTCACCTGGATCTGGCT
GGTCTCGGGCGTCTTCCTGATGTTCGGCCCGGCCGTCTGGCTGGTCTTTTCTTCCTTCAAGACGCCGGCCGCACTTGCCG
AATTCCCGCCGTCCTTCCTGCCCTATGTCACCGAACAGGCCGTCGTGCCGGGCTACGACAAGCCGCTGCCGCTCTATAAC
GTCACGATGCCGGACGGCAGCAGCCGGGTGCTCGCTGAAGTCCGCCGCATCGGCATTGTCGGCCAGATGGTCGATCCGAA
ACAGCCTGGCGAAATCGTCAAGGCGAACATCAAGGACCGTACCCCGGTGCGCAAGGTCGAATTCGCCGCCGGCAACTACA
CCGAACCGTTCCAGCGCTTCGATTTCTTCCTGTTCCTGCGCAACTCCGTCTTCGTCACGGTCGTGGCGACGGCGATCACG
CTGCTCGTCAATTCCATGGCCGCCTTCGCGCTGTCGAAATACCAGTTCCCCGGCCGCACCGCCGTCATGCTGATGATCTT
GGCGACGCTGATGGTGCCGCTCTCGGTGATCGTCGTGCCGCTTTATTCCGTCATCGGCACCCTGAACCTCTTCGACAGCC
TCTGGGGCGTCATCCTGCCAACGGTCGCCACCCCGACAGGTGTCTTCCTGCTGCGCCAGTATATGCTGACCATCCCCGAT
GAGCTGATCGACGCCGCGCGCATGGACAAGGCCAGCGAATGGCAGATCTACTGGCGCATCATCCTGCCGCTGTCGGCGCC
GGCGCTTGCGGTGCTGGCGATCTTCTCGGTCGTCTGGCGCTGGAACGATTTCCTCTGGCCGCTGATCGTGCTCTCGCGCA
AGGAGCTCTATACGCTGCAGGTCGGCCTCAACGTCTATGCCGGCGAGCTCAATGTGCAATGGCACTATATCCTCGCGATG
ACTGTCGTCTCGATGATCCCCGTCGTGCTGATCTTCGTCTTCCTGCAGCGCTTCATCACCACAGGCATCGCCGGCTCGGG
ACTGAAATAA

Upstream 100 bases:

>100_bases
TTGCCTCGGCCGCCTCGATCCTGATGGGCATCGTACTGGTCATCCTGACGCTGATCCAGCTCGGCGTCAGCAGCCGCAAC
GAGAAGAAGGGAACACGCCA

Downstream 100 bases:

>100_bases
TATGAAAGAGGAGAGTGCATGAGCGGGCTCGAGCTCAGGAACATCGTCAAGAATTTCGGCTCCGTCGAGGTCATCCGCGA
TGTCTCGCTTGAGGTCAATG

Product: binding-protein-dependent transporters inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 348

Protein sequence:

>349_residues
MSAVGAFLLRRRGRGWHWTDVVTWIWLVSGVFLMFGPAVWLVFSSFKTPAALAEFPPSFLPYVTEQAVVPGYDKPLPLYN
VTMPDGSSRVLAEVRRIGIVGQMVDPKQPGEIVKANIKDRTPVRKVEFAAGNYTEPFQRFDFFLFLRNSVFVTVVATAIT
LLVNSMAAFALSKYQFPGRTAVMLMILATLMVPLSVIVVPLYSVIGTLNLFDSLWGVILPTVATPTGVFLLRQYMLTIPD
ELIDAARMDKASEWQIYWRIILPLSAPALAVLAIFSVVWRWNDFLWPLIVLSRKELYTLQVGLNVYAGELNVQWHYILAM
TVVSMIPVVLIFVFLQRFITTGIAGSGLK

Sequences:

>Translated_349_residues
MSAVGAFLLRRRGRGWHWTDVVTWIWLVSGVFLMFGPAVWLVFSSFKTPAALAEFPPSFLPYVTEQAVVPGYDKPLPLYN
VTMPDGSSRVLAEVRRIGIVGQMVDPKQPGEIVKANIKDRTPVRKVEFAAGNYTEPFQRFDFFLFLRNSVFVTVVATAIT
LLVNSMAAFALSKYQFPGRTAVMLMILATLMVPLSVIVVPLYSVIGTLNLFDSLWGVILPTVATPTGVFLLRQYMLTIPD
ELIDAARMDKASEWQIYWRIILPLSAPALAVLAIFSVVWRWNDFLWPLIVLSRKELYTLQVGLNVYAGELNVQWHYILAM
TVVSMIPVVLIFVFLQRFITTGIAGSGLK
>Mature_348_residues
SAVGAFLLRRRGRGWHWTDVVTWIWLVSGVFLMFGPAVWLVFSSFKTPAALAEFPPSFLPYVTEQAVVPGYDKPLPLYNV
TMPDGSSRVLAEVRRIGIVGQMVDPKQPGEIVKANIKDRTPVRKVEFAAGNYTEPFQRFDFFLFLRNSVFVTVVATAITL
LVNSMAAFALSKYQFPGRTAVMLMILATLMVPLSVIVVPLYSVIGTLNLFDSLWGVILPTVATPTGVFLLRQYMLTIPDE
LIDAARMDKASEWQIYWRIILPLSAPALAVLAIFSVVWRWNDFLWPLIVLSRKELYTLQVGLNVYAGELNVQWHYILAMT
VVSMIPVVLIFVFLQRFITTGIAGSGLK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=218, Percent_Identity=34.4036697247706, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1787571, Length=212, Percent_Identity=33.9622641509434, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1790464, Length=232, Percent_Identity=29.3103448275862, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 39171; Mature: 39040

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAVGAFLLRRRGRGWHWTDVVTWIWLVSGVFLMFGPAVWLVFSSFKTPAALAEFPPSFL
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHH
PYVTEQAVVPGYDKPLPLYNVTMPDGSSRVLAEVRRIGIVGQMVDPKQPGEIVKANIKDR
HHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHEECCCCCC
TPVRKVEFAAGNYTEPFQRFDFFLFLRNSVFVTVVATAITLLVNSMAAFALSKYQFPGRT
CCCHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
AVMLMILATLMVPLSVIVVPLYSVIGTLNLFDSLWGVILPTVATPTGVFLLRQYMLTIPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCH
ELIDAARMDKASEWQIYWRIILPLSAPALAVLAIFSVVWRWNDFLWPLIVLSRKELYTLQ
HHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
VGLNVYAGELNVQWHYILAMTVVSMIPVVLIFVFLQRFITTGIAGSGLK
ECCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SAVGAFLLRRRGRGWHWTDVVTWIWLVSGVFLMFGPAVWLVFSSFKTPAALAEFPPSFL
CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHH
PYVTEQAVVPGYDKPLPLYNVTMPDGSSRVLAEVRRIGIVGQMVDPKQPGEIVKANIKDR
HHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHEECCCCCC
TPVRKVEFAAGNYTEPFQRFDFFLFLRNSVFVTVVATAITLLVNSMAAFALSKYQFPGRT
CCCHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
AVMLMILATLMVPLSVIVVPLYSVIGTLNLFDSLWGVILPTVATPTGVFLLRQYMLTIPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCH
ELIDAARMDKASEWQIYWRIILPLSAPALAVLAIFSVVWRWNDFLWPLIVLSRKELYTLQ
HHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
VGLNVYAGELNVQWHYILAMTVVSMIPVVLIFVFLQRFITTGIAGSGLK
ECCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]