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The map label for this gene is ddpA [H]

Identifier: 209549289

GI number: 209549289

Start: 1722237

End: 1723832

Strand: Direct

Name: ddpA [H]

Synonym: Rleg2_1692

Alternate gene names: 209549289

Gene position: 1722237-1723832 (Clockwise)

Preceding gene: 209549285

Following gene: 209549290

Centisome position: 37.95

GC content: 59.46

Gene sequence:

>1596_bases
ATGAAGCATTTTTCTAAAGGCTTGTTCGTCGGCGCCGTTTTCGGCGCCCTGACAATCGCCGCGCCGCAGCTGCAGGCCGC
CACGCCGCAGGATCAATTGGTGATCGGGACATCGCTGGCCCAGGTTCTGTCCCTCGATCCGCAGCAGGCGACCGAAGGCA
AGGCCGTCGAGATCATGTCCAATCTTTACGACCGGCTGGTCGCCAGCACGGCTGATGGTAAGATCCTTCCGCAGCTGGCG
GAAAGCTGGAAGGTTGACGACAAGGGCATCACCTTCACGCTGCGCAAGGCCAATTTCGCCTCCGGCAATCCGGTGACTTC
GAAGGACGTCGTCTATTCGCTGGCGCGGCTCTTGAAGATGGATCAGGCCGCCGCCGCCAACCTCAAGCGCGTCGGCTACG
ATAAGAACAATGTCGATAAGCTCGTCAAGGCGGTCGACGACCAGACGGTGCGCATCGATCTTTCCGACCAGGTGACGGCA
GAGCTTCTGCTCTACCGGCTGACGACGACCACCACCAGCGTGGTCGACAGCGTCGAGGTCGAAAGCCACGCCGTCGACAA
TGACTACGGCAACGCCTGGATGCGCACGCATTCGGCCGGCTCCGGCCCGTTCACCCTCAATCGCTGGTCTCCGAACGAAT
TGGTCATTCTCGACGCCAACAAGAATTATATGACCGGCGCGCCGAAGATGAAGCGCGTCATCGTTCGCCATGTGCCGGAA
AGCCAGGTCGAGCGGCTGATGCTGGAGCGCGGCGATATCGATATTGCCAGCGCCCTGACAGCCTCCGATCTCGCGACATT
CCAGGCCAAGCAGGGCTTTGCCATCCAGCGCATTCCGACCGGCGGCTTCTACGTGCTGTCGATGAATGCCGGCAACCAGT
ACCTTTCCAATCCCAAGGTTCGGGAAGCGATTGCCTATGGCATCGATTACAAGGGCATCGAAAAGACGATCATGGGACCT
TACGGACGGGCAAGAACCGTTCCCGTTCCGGAGAACTTCGAATATGCGATCCCAAGCCCGGATTGGCAGCTCAACGTTGA
AAAGTCCAAGCAGCTGCTGAGCGAGGCAGGCTTCAAGGACGGCTTCTCGCTGACGCTGAAGACCATTGCGCAAACGCCGC
GCATCGATCTTGCCACCGCCATCCAGGCATCGCTTGCCCAGGTCGGCATCAAGATCGACATCCAGCAGGGCAACGGTTCG
GAAATCATCGCCGCCCATCGCGCCCGGGATTTCGATCTGCTGATCCCGCAGACCAGCGCCTATATGCCGAATGTGCTCGG
CTCGATGGAGCAGTTTTCCTCCAATCCGGACAACTCGAAAGAGGCCAACAATGCCGGCAATTTCGTCTGGCGCTCGGCTT
GGGACATTCCAGAGCTGACAGCCCTGACCGCAAAAGCATCGATGGAGCCGGACGCCAAGAAGCGCGGCGAACTCTACGTT
CAGATGCAGAAGATGTTCGTCGAACAGAAGCCGGCCGTGCTGCCGATGTTCGAGCGCTTTGAGCCGATCGTCCTCACCGG
CAGGGTCCAGGGATATGTCGGACATCCGTCGCAAATGACGCGTCTCGAGAACGTGACCAAGGTCGAAACCCAGTAA

Upstream 100 bases:

>100_bases
CCCGCTCGGGCCTTGTCAACCGTATCAGACTTCGATAGATCATAATACGACATACGGGCGACATAATATGTCTTCCATAG
TAATCTAGGGAGGAGTGACA

Downstream 100 bases:

>100_bases
GACTCTTAAGGCAGCCGATCATGAAGGAACTCTCCGTAGCCGAATTTGGCCGACGCCTGGCGCATTTGCTGGTCAGCCTG
TTCATTCTCCTCTGTGTGAC

Product: family 5 extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 531; Mature: 531

Protein sequence:

>531_residues
MKHFSKGLFVGAVFGALTIAAPQLQAATPQDQLVIGTSLAQVLSLDPQQATEGKAVEIMSNLYDRLVASTADGKILPQLA
ESWKVDDKGITFTLRKANFASGNPVTSKDVVYSLARLLKMDQAAAANLKRVGYDKNNVDKLVKAVDDQTVRIDLSDQVTA
ELLLYRLTTTTTSVVDSVEVESHAVDNDYGNAWMRTHSAGSGPFTLNRWSPNELVILDANKNYMTGAPKMKRVIVRHVPE
SQVERLMLERGDIDIASALTASDLATFQAKQGFAIQRIPTGGFYVLSMNAGNQYLSNPKVREAIAYGIDYKGIEKTIMGP
YGRARTVPVPENFEYAIPSPDWQLNVEKSKQLLSEAGFKDGFSLTLKTIAQTPRIDLATAIQASLAQVGIKIDIQQGNGS
EIIAAHRARDFDLLIPQTSAYMPNVLGSMEQFSSNPDNSKEANNAGNFVWRSAWDIPELTALTAKASMEPDAKKRGELYV
QMQKMFVEQKPAVLPMFERFEPIVLTGRVQGYVGHPSQMTRLENVTKVETQ

Sequences:

>Translated_531_residues
MKHFSKGLFVGAVFGALTIAAPQLQAATPQDQLVIGTSLAQVLSLDPQQATEGKAVEIMSNLYDRLVASTADGKILPQLA
ESWKVDDKGITFTLRKANFASGNPVTSKDVVYSLARLLKMDQAAAANLKRVGYDKNNVDKLVKAVDDQTVRIDLSDQVTA
ELLLYRLTTTTTSVVDSVEVESHAVDNDYGNAWMRTHSAGSGPFTLNRWSPNELVILDANKNYMTGAPKMKRVIVRHVPE
SQVERLMLERGDIDIASALTASDLATFQAKQGFAIQRIPTGGFYVLSMNAGNQYLSNPKVREAIAYGIDYKGIEKTIMGP
YGRARTVPVPENFEYAIPSPDWQLNVEKSKQLLSEAGFKDGFSLTLKTIAQTPRIDLATAIQASLAQVGIKIDIQQGNGS
EIIAAHRARDFDLLIPQTSAYMPNVLGSMEQFSSNPDNSKEANNAGNFVWRSAWDIPELTALTAKASMEPDAKKRGELYV
QMQKMFVEQKPAVLPMFERFEPIVLTGRVQGYVGHPSQMTRLENVTKVETQ
>Mature_531_residues
MKHFSKGLFVGAVFGALTIAAPQLQAATPQDQLVIGTSLAQVLSLDPQQATEGKAVEIMSNLYDRLVASTADGKILPQLA
ESWKVDDKGITFTLRKANFASGNPVTSKDVVYSLARLLKMDQAAAANLKRVGYDKNNVDKLVKAVDDQTVRIDLSDQVTA
ELLLYRLTTTTTSVVDSVEVESHAVDNDYGNAWMRTHSAGSGPFTLNRWSPNELVILDANKNYMTGAPKMKRVIVRHVPE
SQVERLMLERGDIDIASALTASDLATFQAKQGFAIQRIPTGGFYVLSMNAGNQYLSNPKVREAIAYGIDYKGIEKTIMGP
YGRARTVPVPENFEYAIPSPDWQLNVEKSKQLLSEAGFKDGFSLTLKTIAQTPRIDLATAIQASLAQVGIKIDIQQGNGS
EIIAAHRARDFDLLIPQTSAYMPNVLGSMEQFSSNPDNSKEANNAGNFVWRSAWDIPELTALTAKASMEPDAKKRGELYV
QMQKMFVEQKPAVLPMFERFEPIVLTGRVQGYVGHPSQMTRLENVTKVETQ

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=527, Percent_Identity=29.0322580645161, Blast_Score=165, Evalue=7e-42,
Organism=Escherichia coli, GI1789966, Length=552, Percent_Identity=25.5434782608696, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1787052, Length=356, Percent_Identity=26.9662921348315, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787495, Length=551, Percent_Identity=23.956442831216, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1789397, Length=511, Percent_Identity=23.679060665362, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI87081878, Length=503, Percent_Identity=24.4532803180915, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1787551, Length=419, Percent_Identity=25.0596658711217, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1789887, Length=461, Percent_Identity=25.1626898047722, Blast_Score=76, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 58336; Mature: 58336

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHFSKGLFVGAVFGALTIAAPQLQAATPQDQLVIGTSLAQVLSLDPQQATEGKAVEIMS
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCCHHHHHHH
NLYDRLVASTADGKILPQLAESWKVDDKGITFTLRKANFASGNPVTSKDVVYSLARLLKM
HHHHHHHHCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
DQAAAANLKRVGYDKNNVDKLVKAVDDQTVRIDLSDQVTAELLLYRLTTTTTSVVDSVEV
HHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
ESHAVDNDYGNAWMRTHSAGSGPFTLNRWSPNELVILDANKNYMTGAPKMKRVIVRHVPE
HHHCCCCCCCCCEEEECCCCCCCEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCH
SQVERLMLERGDIDIASALTASDLATFQAKQGFAIQRIPTGGFYVLSMNAGNQYLSNPKV
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCHHHCCCHH
REAIAYGIDYKGIEKTIMGPYGRARTVPVPENFEYAIPSPDWQLNVEKSKQLLSEAGFKD
HHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCC
GFSLTLKTIAQTPRIDLATAIQASLAQVGIKIDIQQGNGSEIIAAHRARDFDLLIPQTSA
CHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEEEEECCCCCEEEEECCCCCCEEECCCCHH
YMPNVLGSMEQFSSNPDNSKEANNAGNFVWRSAWDIPELTALTAKASMEPDAKKRGELYV
HCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCHHHCHHHH
QMQKMFVEQKPAVLPMFERFEPIVLTGRVQGYVGHPSQMTRLENVTKVETQ
HHHHHHHHCCCCCCCHHHCCCCEEEEEEEEEEECCCHHHHHHHCCHHCCCC
>Mature Secondary Structure
MKHFSKGLFVGAVFGALTIAAPQLQAATPQDQLVIGTSLAQVLSLDPQQATEGKAVEIMS
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCCHHHHHHH
NLYDRLVASTADGKILPQLAESWKVDDKGITFTLRKANFASGNPVTSKDVVYSLARLLKM
HHHHHHHHCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
DQAAAANLKRVGYDKNNVDKLVKAVDDQTVRIDLSDQVTAELLLYRLTTTTTSVVDSVEV
HHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
ESHAVDNDYGNAWMRTHSAGSGPFTLNRWSPNELVILDANKNYMTGAPKMKRVIVRHVPE
HHHCCCCCCCCCEEEECCCCCCCEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCH
SQVERLMLERGDIDIASALTASDLATFQAKQGFAIQRIPTGGFYVLSMNAGNQYLSNPKV
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCHHHCCCHH
REAIAYGIDYKGIEKTIMGPYGRARTVPVPENFEYAIPSPDWQLNVEKSKQLLSEAGFKD
HHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCC
GFSLTLKTIAQTPRIDLATAIQASLAQVGIKIDIQQGNGSEIIAAHRARDFDLLIPQTSA
CHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEEEEECCCCCEEEEECCCCCCEEECCCCHH
YMPNVLGSMEQFSSNPDNSKEANNAGNFVWRSAWDIPELTALTAKASMEPDAKKRGELYV
HCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCHHHCHHHH
QMQKMFVEQKPAVLPMFERFEPIVLTGRVQGYVGHPSQMTRLENVTKVETQ
HHHHHHHHCCCCCCCHHHCCCCEEEEEEEEEEECCCHHHHHHHCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]