| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
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The map label for this gene is nfdA [H]
Identifier: 209549266
GI number: 209549266
Start: 1697903
End: 1699885
Strand: Direct
Name: nfdA [H]
Synonym: Rleg2_1668
Alternate gene names: 209549266
Gene position: 1697903-1699885 (Clockwise)
Preceding gene: 209549265
Following gene: 209549267
Centisome position: 37.42
GC content: 61.57
Gene sequence:
>1983_bases ATGACGACGCGTCGATCTTTTCTGGGAGCAGCATCGAGCCTGGCGTTCTCGAACCTCTTTTCCCCGGCGAAGGCCGCCGA TCCCAACCAGACCGGAGTAGACACCATGCATCCCGACCTGATCCTTCACAACGGCCGCGTCACCACGCTTGACCGGTCCA ATCCGAATGCAACGGCTATCGCCGTTAAGGACGGTCTCTTTGTCGAAGTCGGATCCGACAGCGAGATCATGGCGCTGGCT GGGTCCAGCACCAGGGTCGTCGACCTCAAGGGTAAGCGGGTCTTGCCCGGGCTCATCGACAACCACACCCACGTGGTCCG CGGCGGCCTGAACTACAACATGGAGCTGCGTTGGGACGGCGTCCGGTCGCTCGCCGATGCGATGGACATGCTAAAGCGCC AGGTGGCGGTCACGCCCGCGCCGCAGTGGGTGCGCGTCGTCGGCGGGTTCAGCGAACATCAGTTTGCGGAAAAGCGCCTC CCGACGATTGAGGAAATCAATGCTGTCGCGCCCGACACGCCGGTGTTCCTTCTGCACCTCTACGATCGCGCACTGCTCAA CGGGGCGGCTTTGCGTGCAGTCGGATACACCCGTGACACGCCAAACCCGCCCGGCGGAGAGATCACCCGCGACGCCAATG GCAATCCCACAGGCATGCTGCTGGCCAAGCCGAATGCAGGGGTTCTGTACTCGACACTCGCCAAGGGACCGAAACTTCCT TTGGACTACCAGGTCAACTCGACCCGCCACTTCATGCGCGAGCTCAACCGCCTGGGCGTGACGGGCGTCATCGATGCCGG CGGCGGCTTCCAGAACTATCCTGATGACTACGAAGTCATCCAGAAGCTCTCCGATGCGAACCAGATGACCGTTCGCCTTG CCTACAATCTCTTTACCCAGAAGCCCAAGGAAGAGAAACAGGACTTCCTGAAGTGGACGCAGTCGGTCAAATACAAGCAG GGCAACGACTACTTCCGCCACAACGGTGCCGGCGAGATGCTTGTCTTCTCCGCCGCAGATTTCGAGGATTTCCGCCAGCC TCGTCCGGAGATGGCTCCGGAAATGGAAGGCGAGCTGGAGGAGGTCGTCCGTGTTCTGGCTGAAAACCGCTGGCCCTGGC GTCTGCACGCCACCTATGACGAAACGATTTCCCGAGCCCTCGACGTGTTTGAGAAGGTCGACAAGGATATCCCGCTAGAA GGTCTGAACTGGTTCTTCGATCACGCCGAAACGATCTCCGAACGTTCGATCGACCGGATCGCGGCGCTTGGCGGCGGCAT CGCCACCCAGCATCGCATGGCCTATCAGGGGGAATACTTCGTCGAACGCTACGGTCACGGTGTAGCCGAGGCGACGCCGC CGATCCGCCGCATGCTCGAAAAGGGCGTGAATGTCTCGGCAGGCACCGACGCCACCCGCGTTGCCTCTTACAACCCTTGG GTTTCGCTCTCCTGGATGGTCACCGGCAAGACGGTCGGCGGCATGCAGCTCTATCCGCGCGCCAACTGCCTCGATCGCGA GACGGCGTTGCGCATGTGGACCGAGAAGGTCACATGGTTCTCCAATGAGGAGGGCAAGAAGGGCCGTATCGAGAAGGGCC AGTTCGCCGATCTGGTGGTGCCGGACAAGGACTTCTTCTCCTGCGCGGAAGACGAGATCTCCTTCCTCACTTCGGAACTG ACCATGGTCGGCGGCAAGATTGTCTATGGGGCAGGCGACTTCAAGACGCTCGACGAGAACGACGTGCCGCCGGCGATGCC CGACTGGTCTCCCGTCCGCAGATTCGGCGGATACGCGGCCTGGGGCGAACCGGAAGGCGCAGGCTCGCGCTCTTTGCGCC GTACGGTGATTTCCACATGCGGATGTGCCAGTGACTGCGGCGTGCATGGCCATGACCATGCCGGACCCTGGACATCCAAA CTTCCGATCGCCGACCTAAAGGGATTCTTCGGCGCTCTCGGGTGCTCCTGCTGGGCGGTATAA
Upstream 100 bases:
>100_bases TCCATCAAATCAAGCCGCACATGTTCGGTCATTTGCCGAAGGGCGGCGACAGCATTGTCGGTGTTCATCAGGCGGAGGCG AGGATGGAGGATCATAGCTG
Downstream 100 bases:
>100_bases CTCAGCTTTGCGCTCAGGCGACACGTCGTCGCCCGAGCGCCTTTGTCGAGAATTGCAAAAACCGCAATTAAGTCAAAATG ATTGCTGCAATTGTTGTTAA
Product: amidohydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 660; Mature: 659
Protein sequence:
>660_residues MTTRRSFLGAASSLAFSNLFSPAKAADPNQTGVDTMHPDLILHNGRVTTLDRSNPNATAIAVKDGLFVEVGSDSEIMALA GSSTRVVDLKGKRVLPGLIDNHTHVVRGGLNYNMELRWDGVRSLADAMDMLKRQVAVTPAPQWVRVVGGFSEHQFAEKRL PTIEEINAVAPDTPVFLLHLYDRALLNGAALRAVGYTRDTPNPPGGEITRDANGNPTGMLLAKPNAGVLYSTLAKGPKLP LDYQVNSTRHFMRELNRLGVTGVIDAGGGFQNYPDDYEVIQKLSDANQMTVRLAYNLFTQKPKEEKQDFLKWTQSVKYKQ GNDYFRHNGAGEMLVFSAADFEDFRQPRPEMAPEMEGELEEVVRVLAENRWPWRLHATYDETISRALDVFEKVDKDIPLE GLNWFFDHAETISERSIDRIAALGGGIATQHRMAYQGEYFVERYGHGVAEATPPIRRMLEKGVNVSAGTDATRVASYNPW VSLSWMVTGKTVGGMQLYPRANCLDRETALRMWTEKVTWFSNEEGKKGRIEKGQFADLVVPDKDFFSCAEDEISFLTSEL TMVGGKIVYGAGDFKTLDENDVPPAMPDWSPVRRFGGYAAWGEPEGAGSRSLRRTVISTCGCASDCGVHGHDHAGPWTSK LPIADLKGFFGALGCSCWAV
Sequences:
>Translated_660_residues MTTRRSFLGAASSLAFSNLFSPAKAADPNQTGVDTMHPDLILHNGRVTTLDRSNPNATAIAVKDGLFVEVGSDSEIMALA GSSTRVVDLKGKRVLPGLIDNHTHVVRGGLNYNMELRWDGVRSLADAMDMLKRQVAVTPAPQWVRVVGGFSEHQFAEKRL PTIEEINAVAPDTPVFLLHLYDRALLNGAALRAVGYTRDTPNPPGGEITRDANGNPTGMLLAKPNAGVLYSTLAKGPKLP LDYQVNSTRHFMRELNRLGVTGVIDAGGGFQNYPDDYEVIQKLSDANQMTVRLAYNLFTQKPKEEKQDFLKWTQSVKYKQ GNDYFRHNGAGEMLVFSAADFEDFRQPRPEMAPEMEGELEEVVRVLAENRWPWRLHATYDETISRALDVFEKVDKDIPLE GLNWFFDHAETISERSIDRIAALGGGIATQHRMAYQGEYFVERYGHGVAEATPPIRRMLEKGVNVSAGTDATRVASYNPW VSLSWMVTGKTVGGMQLYPRANCLDRETALRMWTEKVTWFSNEEGKKGRIEKGQFADLVVPDKDFFSCAEDEISFLTSEL TMVGGKIVYGAGDFKTLDENDVPPAMPDWSPVRRFGGYAAWGEPEGAGSRSLRRTVISTCGCASDCGVHGHDHAGPWTSK LPIADLKGFFGALGCSCWAV >Mature_659_residues TTRRSFLGAASSLAFSNLFSPAKAADPNQTGVDTMHPDLILHNGRVTTLDRSNPNATAIAVKDGLFVEVGSDSEIMALAG SSTRVVDLKGKRVLPGLIDNHTHVVRGGLNYNMELRWDGVRSLADAMDMLKRQVAVTPAPQWVRVVGGFSEHQFAEKRLP TIEEINAVAPDTPVFLLHLYDRALLNGAALRAVGYTRDTPNPPGGEITRDANGNPTGMLLAKPNAGVLYSTLAKGPKLPL DYQVNSTRHFMRELNRLGVTGVIDAGGGFQNYPDDYEVIQKLSDANQMTVRLAYNLFTQKPKEEKQDFLKWTQSVKYKQG NDYFRHNGAGEMLVFSAADFEDFRQPRPEMAPEMEGELEEVVRVLAENRWPWRLHATYDETISRALDVFEKVDKDIPLEG LNWFFDHAETISERSIDRIAALGGGIATQHRMAYQGEYFVERYGHGVAEATPPIRRMLEKGVNVSAGTDATRVASYNPWV SLSWMVTGKTVGGMQLYPRANCLDRETALRMWTEKVTWFSNEEGKKGRIEKGQFADLVVPDKDFFSCAEDEISFLTSELT MVGGKIVYGAGDFKTLDENDVPPAMPDWSPVRRFGGYAAWGEPEGAGSRSLRRTVISTCGCASDCGVHGHDHAGPWTSKL PIADLKGFFGALGCSCWAV
Specific function: Hydrolyzes N-substituted formamides, but not amides. N- benzylformamide is the preferred substrate, while N-butylformamide is hydrolyzed at a much lower rate. Has very low activity towards allylformamide, N-(2-cyclohex-1-enylethyl)formamide and N-(alpha-
COG id: COG1574
COG function: function code R; Predicted metal-dependent hydrolase with the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013108 - InterPro: IPR011059 [H]
Pfam domain/function: PF07969 Amidohydro_3 [H]
EC number: =3.5.1.91 [H]
Molecular weight: Translated: 72894; Mature: 72763
Theoretical pI: Translated: 6.03; Mature: 6.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTRRSFLGAASSLAFSNLFSPAKAADPNQTGVDTMHPDLILHNGRVTTLDRSNPNATAI CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEECCCCCEEEE AVKDGLFVEVGSDSEIMALAGSSTRVVDLKGKRVLPGLIDNHTHVVRGGLNYNMELRWDG EEECCEEEEECCCCCEEEEECCCEEEEEECCCEECCHHHCCCCEEEECCCCCCEEEEECH VRSLADAMDMLKRQVAVTPAPQWVRVVGGFSEHQFAEKRLPTIEEINAVAPDTPVFLLHL HHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCCCCCEEHHHH YDRALLNGAALRAVGYTRDTPNPPGGEITRDANGNPTGMLLAKPNAGVLYSTLAKGPKLP HHHHHHCCHHHEEECCCCCCCCCCCCCEEECCCCCCCEEEEECCCCCCHHHHHHCCCCCC LDYQVNSTRHFMRELNRLGVTGVIDAGGGFQNYPDDYEVIQKLSDANQMTVRLAYNLFTQ EEEEECHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEEEHHHHHC KPKEEKQDFLKWTQSVKYKQGNDYFRHNGAGEMLVFSAADFEDFRQPRPEMAPEMEGELE CCHHHHHHHHHHHHHCCCCCCCCCCEECCCCCEEEEECCCHHHHHCCCCCCCCCCCHHHH EVVRVLAENRWPWRLHATYDETISRALDVFEKVDKDIPLEGLNWFFDHAETISERSIDRI HHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH AALGGGIATQHRMAYQGEYFVERYGHGVAEATPPIRRMLEKGVNVSAGTDATRVASYNPW HHHCCCHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEECCCCC VSLSWMVTGKTVGGMQLYPRANCLDRETALRMWTEKVTWFSNEEGKKGRIEKGQFADLVV EEEEEEEECCCCCCEEECCCCCCCCHHHHHHHHHHHHHEECCCCCCCCCCCCCCEEEEEC PDKDFFSCAEDEISFLTSELTMVGGKIVYGAGDFKTLDENDVPPAMPDWSPVRRFGGYAA CCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC WGEPEGAGSRSLRRTVISTCGCASDCGVHGHDHAGPWTSKLPIADLKGFFGALGCSCWAV CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHCCC >Mature Secondary Structure TTRRSFLGAASSLAFSNLFSPAKAADPNQTGVDTMHPDLILHNGRVTTLDRSNPNATAI CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEECCCCCEEEE AVKDGLFVEVGSDSEIMALAGSSTRVVDLKGKRVLPGLIDNHTHVVRGGLNYNMELRWDG EEECCEEEEECCCCCEEEEECCCEEEEEECCCEECCHHHCCCCEEEECCCCCCEEEEECH VRSLADAMDMLKRQVAVTPAPQWVRVVGGFSEHQFAEKRLPTIEEINAVAPDTPVFLLHL HHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCCCCCEEHHHH YDRALLNGAALRAVGYTRDTPNPPGGEITRDANGNPTGMLLAKPNAGVLYSTLAKGPKLP HHHHHHCCHHHEEECCCCCCCCCCCCCEEECCCCCCCEEEEECCCCCCHHHHHHCCCCCC LDYQVNSTRHFMRELNRLGVTGVIDAGGGFQNYPDDYEVIQKLSDANQMTVRLAYNLFTQ EEEEECHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEEEHHHHHC KPKEEKQDFLKWTQSVKYKQGNDYFRHNGAGEMLVFSAADFEDFRQPRPEMAPEMEGELE CCHHHHHHHHHHHHHCCCCCCCCCCEECCCCCEEEEECCCHHHHHCCCCCCCCCCCHHHH EVVRVLAENRWPWRLHATYDETISRALDVFEKVDKDIPLEGLNWFFDHAETISERSIDRI HHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH AALGGGIATQHRMAYQGEYFVERYGHGVAEATPPIRRMLEKGVNVSAGTDATRVASYNPW HHHCCCHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEECCCCC VSLSWMVTGKTVGGMQLYPRANCLDRETALRMWTEKVTWFSNEEGKKGRIEKGQFADLVV EEEEEEEECCCCCCEEECCCCCCCCHHHHHHHHHHHHHEECCCCCCCCCCCCCCEEEEEC PDKDFFSCAEDEISFLTSELTMVGGKIVYGAGDFKTLDENDVPPAMPDWSPVRRFGGYAA CCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC WGEPEGAGSRSLRRTVISTCGCASDCGVHGHDHAGPWTSKLPIADLKGFFGALGCSCWAV CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA