Click here to switch to the map view.

The map label for this gene is ycaC [H]

Identifier: 209549264

GI number: 209549264

Start: 1696861

End: 1697550

Strand: Direct

Name: ycaC [H]

Synonym: Rleg2_1666

Alternate gene names: 209549264

Gene position: 1696861-1697550 (Clockwise)

Preceding gene: 209549263

Following gene: 209549265

Centisome position: 37.39

GC content: 59.13

Gene sequence:

>690_bases
ATGTCTAAGCTCGAAGTCTTGACCCCGGCAAACAGCCAGCTCATCTTCATCGACCAGCAGCCGCAGATGGCTTTCGGCGT
GCAGTCGATCGACCGTCAGACGCTGAAGAACAACGTCGTCGGTCTCGCCAAGGCTGCGAAGATCTTCAAAGTTCCGACCA
CGATCACAACGGTCGAGACGTTGTCATTCTCGGGCAACACCTTTCCGGAACTGCTTTCCGTCTATCCGGAGAACGACATC
CTCGAGCGTACCTCGATGAATTCCTGGGACGACCAGAACGTTCGTGATGCGCTGGCAAAGAATGCCGCCATTGGCCGCAG
GAAGATCGTGGTGTCTGGCCTTTGGACGGAAGTCTGCAACACGACCTTCGCGCTTTCCGCCCTCCACGACATTCCTGACT
ATGAAATCTACATGGTCGCGGACGCCTCCGGCGGCACTTCGGCCGACGCGCATAAGTACGCGATGGACCGGATGGTGCAG
GCTGGCGTGATCCCGGTCACCTGGCAGCAGGTTCTGCTCGAATGGCAGCGCGACTGGGCTCGTAAGGAGACTTACGACGC
GGTCACCACGCTCGTGAAGGAGCATTCCGGCGCCTACGGCATGGGGATCGACTATGCCTACACGATGGTTCACGGCGCCG
ACGAACGCGTCAAGCATGGCAACCGCATCGGCCCGAACCCCGCAAAGTAA

Upstream 100 bases:

>100_bases
GCCCAGGCAGTCCGTGGAAGCATCGGTTTCGACTCCTCAGGGTCAAGCTCATTTCATAACCAGCCGCATTCGCGGTCTAA
ACAACCAAAAGGAAAATATC

Downstream 100 bases:

>100_bases
TAGCCGGATCCGGCCGCTCCGAGGACCCCGTCGGAGCGGCTTTTCTCGCAACCGGAGAACATTCCATGAAAATCTACCTT
CTGTCGCTTGGCGCGGGTCT

Product: isochorismatase hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MSKLEVLTPANSQLIFIDQQPQMAFGVQSIDRQTLKNNVVGLAKAAKIFKVPTTITTVETLSFSGNTFPELLSVYPENDI
LERTSMNSWDDQNVRDALAKNAAIGRRKIVVSGLWTEVCNTTFALSALHDIPDYEIYMVADASGGTSADAHKYAMDRMVQ
AGVIPVTWQQVLLEWQRDWARKETYDAVTTLVKEHSGAYGMGIDYAYTMVHGADERVKHGNRIGPNPAK

Sequences:

>Translated_229_residues
MSKLEVLTPANSQLIFIDQQPQMAFGVQSIDRQTLKNNVVGLAKAAKIFKVPTTITTVETLSFSGNTFPELLSVYPENDI
LERTSMNSWDDQNVRDALAKNAAIGRRKIVVSGLWTEVCNTTFALSALHDIPDYEIYMVADASGGTSADAHKYAMDRMVQ
AGVIPVTWQQVLLEWQRDWARKETYDAVTTLVKEHSGAYGMGIDYAYTMVHGADERVKHGNRIGPNPAK
>Mature_228_residues
SKLEVLTPANSQLIFIDQQPQMAFGVQSIDRQTLKNNVVGLAKAAKIFKVPTTITTVETLSFSGNTFPELLSVYPENDIL
ERTSMNSWDDQNVRDALAKNAAIGRRKIVVSGLWTEVCNTTFALSALHDIPDYEIYMVADASGGTSADAHKYAMDRMVQA
GVIPVTWQQVLLEWQRDWARKETYDAVTTLVKEHSGAYGMGIDYAYTMVHGADERVKHGNRIGPNPAK

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787124, Length=190, Percent_Identity=31.0526315789474, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 25411; Mature: 25280

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLEVLTPANSQLIFIDQQPQMAFGVQSIDRQTLKNNVVGLAKAAKIFKVPTTITTVET
CCCCEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEE
LSFSGNTFPELLSVYPENDILERTSMNSWDDQNVRDALAKNAAIGRRKIVVSGLWTEVCN
EECCCCCHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHH
TTFALSALHDIPDYEIYMVADASGGTSADAHKYAMDRMVQAGVIPVTWQQVLLEWQRDWA
HHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
RKETYDAVTTLVKEHSGAYGMGIDYAYTMVHGADERVKHGNRIGPNPAK
HHHHHHHHHHHHHHCCCCCCCCCHHHHHEEECCHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SKLEVLTPANSQLIFIDQQPQMAFGVQSIDRQTLKNNVVGLAKAAKIFKVPTTITTVET
CCCEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEE
LSFSGNTFPELLSVYPENDILERTSMNSWDDQNVRDALAKNAAIGRRKIVVSGLWTEVCN
EECCCCCHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHH
TTFALSALHDIPDYEIYMVADASGGTSADAHKYAMDRMVQAGVIPVTWQQVLLEWQRDWA
HHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
RKETYDAVTTLVKEHSGAYGMGIDYAYTMVHGADERVKHGNRIGPNPAK
HHHHHHHHHHHHHHCCCCCCCCCHHHHHEEECCHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 9782055 [H]