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The map label for this gene is yhjC [H]

Identifier: 209549263

GI number: 209549263

Start: 1695416

End: 1696333

Strand: Direct

Name: yhjC [H]

Synonym: Rleg2_1665

Alternate gene names: 209549263

Gene position: 1695416-1696333 (Clockwise)

Preceding gene: 209549262

Following gene: 209549264

Centisome position: 37.36

GC content: 53.16

Gene sequence:

>918_bases
ATGGATCAATTGGGAGCAATCAGAGCCTTTGTTCGCGTCGTCGAGGCAGGATCTTTTGCAAAGGCTGCAGACACGATGGG
TGCGCCGCGGTCGACCGTGAGTAAGCTTGTTCAGGATCTCGAGGCAAGCTTGAGCCTAAAACTGCTCGAACGCACGACAC
GTTCCGTCACCGTAACACCTCAGGGCATTGCGTATTACGAGCGAGCCCTTCGCCTGATCGCCGATCTGGATGAAATGAAC
AATGAGGCCACCCGTGGGCGCCTGGCGACGAGCGGAAAACTTCGGGTTGACATAGGAGGGACCTTCGCGAATGCGATTTT
GATCCCTCGGTTGCCAGAGTTTTACGCACTCTATCCAGAGATCGAGTTACATCTTGGTGTAACAGAACGTCAGGCCGACA
TCGTCGAAGAGGGTATAGACTGCGTCATACGTGCCGGCGATCTATCAAGCGCATCTATTGTTGCGAGGAAGTTATGCAGC
GTCGAGATAGTGACCTGCGCAACCCCGGGATACCTCGAAAAATACGGCGTTCCAGCTTCGCCATCGGACCTGCAGCGTGA
TCATATTTTCGTGCAATACTTTTTCGCACGTAGTCTTAAAGCAGCACCCGTTCGACTGATGAAAGGTGAGGAAAAAATAG
AGATATACAGCCCGATCAAGCTTTCCACCAGTGATGCGACCGCGCATTTGCAAGGAATATTGGCAGGACTGGGTATAGGA
CAGACATTTGAATTCTTGGCACGCCCTCATATCGCTCGTGGCACTCTGGTCCCAATCATGAACGATTGGGCGCCACCCCG
TTATCCTGTTCACATTTTAAGGCCAGCGGGCCGGTTTCCGAGCGTCAAGTATCAGGTCTTCGCGGATTGGGTTGCAGGCG
TATTTTCTGCCTACGACCATGGCACCCGGACATCCTAG

Upstream 100 bases:

>100_bases
GGCGGCGTGACGATACCGCTCAAAACTAGTGCCCTTTGCAAATGATCGACAACTGAACCCAAGGCCGTCGCACACGCAGA
TTTCTAAGGAGAAAATGCCA

Downstream 100 bases:

>100_bases
GGTGTTTATCCAGATTCATGGATAGTTACTCCACAACGACGGGCTTCTCCGATTTCTCCTTTGAAGTTATCTGCCACGGC
TAATGTCAGCCATCGCCCGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MDQLGAIRAFVRVVEAGSFAKAADTMGAPRSTVSKLVQDLEASLSLKLLERTTRSVTVTPQGIAYYERALRLIADLDEMN
NEATRGRLATSGKLRVDIGGTFANAILIPRLPEFYALYPEIELHLGVTERQADIVEEGIDCVIRAGDLSSASIVARKLCS
VEIVTCATPGYLEKYGVPASPSDLQRDHIFVQYFFARSLKAAPVRLMKGEEKIEIYSPIKLSTSDATAHLQGILAGLGIG
QTFEFLARPHIARGTLVPIMNDWAPPRYPVHILRPAGRFPSVKYQVFADWVAGVFSAYDHGTRTS

Sequences:

>Translated_305_residues
MDQLGAIRAFVRVVEAGSFAKAADTMGAPRSTVSKLVQDLEASLSLKLLERTTRSVTVTPQGIAYYERALRLIADLDEMN
NEATRGRLATSGKLRVDIGGTFANAILIPRLPEFYALYPEIELHLGVTERQADIVEEGIDCVIRAGDLSSASIVARKLCS
VEIVTCATPGYLEKYGVPASPSDLQRDHIFVQYFFARSLKAAPVRLMKGEEKIEIYSPIKLSTSDATAHLQGILAGLGIG
QTFEFLARPHIARGTLVPIMNDWAPPRYPVHILRPAGRFPSVKYQVFADWVAGVFSAYDHGTRTS
>Mature_305_residues
MDQLGAIRAFVRVVEAGSFAKAADTMGAPRSTVSKLVQDLEASLSLKLLERTTRSVTVTPQGIAYYERALRLIADLDEMN
NEATRGRLATSGKLRVDIGGTFANAILIPRLPEFYALYPEIELHLGVTERQADIVEEGIDCVIRAGDLSSASIVARKLCS
VEIVTCATPGYLEKYGVPASPSDLQRDHIFVQYFFARSLKAAPVRLMKGEEKIEIYSPIKLSTSDATAHLQGILAGLGIG
QTFEFLARPHIARGTLVPIMNDWAPPRYPVHILRPAGRFPSVKYQVFADWVAGVFSAYDHGTRTS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=298, Percent_Identity=35.2348993288591, Blast_Score=188, Evalue=5e-49,
Organism=Escherichia coli, GI1786401, Length=284, Percent_Identity=31.6901408450704, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1789440, Length=272, Percent_Identity=30.1470588235294, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI87081978, Length=272, Percent_Identity=31.25, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1789639, Length=305, Percent_Identity=26.8852459016393, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=29.1666666666667, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787589, Length=291, Percent_Identity=25.7731958762887, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1789173, Length=262, Percent_Identity=28.2442748091603, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1786448, Length=295, Percent_Identity=25.7627118644068, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788706, Length=183, Percent_Identity=27.8688524590164, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI157672245, Length=119, Percent_Identity=31.0924369747899, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33409; Mature: 33409

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQLGAIRAFVRVVEAGSFAKAADTMGAPRSTVSKLVQDLEASLSLKLLERTTRSVTVTP
CCHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
QGIAYYERALRLIADLDEMNNEATRGRLATSGKLRVDIGGTFANAILIPRLPEFYALYPE
CHHHHHHHHHHHHHHHHHHCCHHHCCEEECCCEEEEEECCCEEEEEECCCCCHHHEECCC
IELHLGVTERQADIVEEGIDCVIRAGDLSSASIVARKLCSVEIVTCATPGYLEKYGVPAS
EEEEECCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCEEEEEECCCCHHHHCCCCCC
PSDLQRDHIFVQYFFARSLKAAPVRLMKGEEKIEIYSPIKLSTSDATAHLQGILAGLGIG
CCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCEEEEECCEEECCCHHHHHHHHHHHHCCCC
QTFEFLARPHIARGTLVPIMNDWAPPRYPVHILRPAGRFPSVKYQVFADWVAGVFSAYDH
HHHHHHCCCCCCCCCCCCHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCC
GTRTS
CCCCC
>Mature Secondary Structure
MDQLGAIRAFVRVVEAGSFAKAADTMGAPRSTVSKLVQDLEASLSLKLLERTTRSVTVTP
CCHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
QGIAYYERALRLIADLDEMNNEATRGRLATSGKLRVDIGGTFANAILIPRLPEFYALYPE
CHHHHHHHHHHHHHHHHHHCCHHHCCEEECCCEEEEEECCCEEEEEECCCCCHHHEECCC
IELHLGVTERQADIVEEGIDCVIRAGDLSSASIVARKLCSVEIVTCATPGYLEKYGVPAS
EEEEECCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCEEEEEECCCCHHHHCCCCCC
PSDLQRDHIFVQYFFARSLKAAPVRLMKGEEKIEIYSPIKLSTSDATAHLQGILAGLGIG
CCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCEEEEECCEEECCCHHHHHHHHHHHHCCCC
QTFEFLARPHIARGTLVPIMNDWAPPRYPVHILRPAGRFPSVKYQVFADWVAGVFSAYDH
HHHHHHCCCCCCCCCCCCHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCC
GTRTS
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]