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The map label for this gene is hfq [H]

Identifier: 209549231

GI number: 209549231

Start: 1662629

End: 1662871

Strand: Direct

Name: hfq [H]

Synonym: Rleg2_1632

Alternate gene names: 209549231

Gene position: 1662629-1662871 (Clockwise)

Preceding gene: 209549230

Following gene: 209549232

Centisome position: 36.64

GC content: 48.56

Gene sequence:

>243_bases
ATGGCGGAACGTTCTCAGAATCTCCAGGATTTATTTCTCAATACTGTTCGCAAACAAAAGATTTCCCTGACAATCTTTTT
GATCAACGGCGTGAAGCTCACGGGCGTTGTTACGTCTTTCGACAATTTCTGTGTTCTTCTTCGCCGTGACGGCCATTCAC
AGCTCGTGTATAAGCATGCGATCTCGACGATCATGCCGGGCCAGCCGATGCAGATGTTCGAGAGCGAAGAAGCAGCGTCC
TAA

Upstream 100 bases:

>100_bases
GATTTGCTGGACGGGTGAAATGAGGCACCGGTCTTGCGGGTGAGGTTGATTGAAATTCTACCGGCCGGATCAGGTCGGCA
ATAAAGAAAGAAGCGGCGCG

Downstream 100 bases:

>100_bases
CAGGATCAGCCGTCATTTCGACACGCGATACCAAGAACGATTCGATCATCCCTGAGGCCGCCAAGCACAGGGACGACATG
CGCGCGACCGTCGTCGTGCC

Product: RNA-binding protein Hfq

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 80; Mature: 79

Protein sequence:

>80_residues
MAERSQNLQDLFLNTVRKQKISLTIFLINGVKLTGVVTSFDNFCVLLRRDGHSQLVYKHAISTIMPGQPMQMFESEEAAS

Sequences:

>Translated_80_residues
MAERSQNLQDLFLNTVRKQKISLTIFLINGVKLTGVVTSFDNFCVLLRRDGHSQLVYKHAISTIMPGQPMQMFESEEAAS
>Mature_79_residues
AERSQNLQDLFLNTVRKQKISLTIFLINGVKLTGVVTSFDNFCVLLRRDGHSQLVYKHAISTIMPGQPMQMFESEEAAS

Specific function: RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs [H]

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hfq family [H]

Homologues:

Organism=Escherichia coli, GI1790614, Length=67, Percent_Identity=49.2537313432836, Blast_Score=80, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005001
- InterPro:   IPR010920
- InterPro:   IPR001163 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 9045; Mature: 8913

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAERSQNLQDLFLNTVRKQKISLTIFLINGVKLTGVVTSFDNFCVLLRRDGHSQLVYKHA
CCCCCCCHHHHHHHHHHCCEEEEEEEEECCEEEEEEEECCCCEEEEEEECCCCHHHHHHH
ISTIMPGQPMQMFESEEAAS
HHHCCCCCCHHHHCCCCCCC
>Mature Secondary Structure 
AERSQNLQDLFLNTVRKQKISLTIFLINGVKLTGVVTSFDNFCVLLRRDGHSQLVYKHA
CCCCCCHHHHHHHHHHCCEEEEEEEEECCEEEEEEEECCCCEEEEEEECCCCHHHHHHH
ISTIMPGQPMQMFESEEAAS
HHHCCCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA