| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
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The map label for this gene is mrcA [H]
Identifier: 209548907
GI number: 209548907
Start: 1330925
End: 1333384
Strand: Direct
Name: mrcA [H]
Synonym: Rleg2_1304
Alternate gene names: 209548907
Gene position: 1330925-1333384 (Clockwise)
Preceding gene: 209548906
Following gene: 209548908
Centisome position: 29.33
GC content: 63.09
Gene sequence:
>2460_bases ATGGTTAGACTTTTTGGATATTTCTTCGGAATGGCCTGCGTCCTGTTTCTGGTCGCGGCGGCGGGTGTTGCCATCTATCT CGCCAACGTTGCGAAGGATCTCCCCGACTATGCCGTTCTGAACAGCTATGCGCCGCCGGTGACCACCCGTGTCCACGCCG GCAACGGCGCGCTGATGGCCGAATACGCCAAGGAAAAGCGTCTCTTCCTGCCGATCCAGGCCATCCCCGACCGTGTCAAG GCGGCATTCCTGTCGGCTGAAGACAAGAATTTCTACAACCACCCGGGCGTCGATCTCACCGGTCTCGGCCGCGCCATCCT CGTCAACCTGCAGAATTTCGGTTCCGGCCGCCGCCCCGTCGGCGCGTCGACCATCACCCAGCAGGTCGCCAAGAACTTCC TTCTGAGCTCCGACCAGACGATCGACCGCAAGATCAAGGAAGCGATCCTGTCCTTCCGTATCGAGCAGGCCTACAGCAAG GACAAGATCCTTGAGCTCTACCTGAACGAGATTTTCTTCGGCCTGAATTCCTACGGCATCGCCGGCGCCGCGCTCACCTA TTTCAACAAATCCGTCACCGAGCTGACCGTCGCCGAAGCCGCCTATCTGGCATCCTTGCCGAAAGGCCCGGCCAATTATC ATCCTTTCCGCCATCCGGAAGCTGCGCTCGAGCGCCGCAACTGGGTGATCGACCGCATGGTCGAGAACGGCTATGTCAGC CAGAGCGACGGCGAGGAAGCCAAGAAGCAGCCGCTCGGCGTCACCGCCCGCACGACCGGCCCCTCGCTTTTTGCTTCGGA CTATTTCGCCGAAGCCGTGCGTCGCCAGCTGATCGACCAATATGGTGAGAAGGTCCTCTATGAGGGCGGCCTTTCGGTGC GCACCTCGCTGGATCCGCAGATGCAGCTCGCTGCCCGCAAGGCGCTGCAGGACGGTCTGGTGACCTATGACGAGCGCCGC GGTTTCCACGGCCCGATCAAGCAGATCGATGCAAACGGTGACTGGGGCAAGGCGCTTGCCGATATTCCGGCACTTGCCGA CGTGCCGGAATGGCGGCTTGCCGTCGTGCTCGCCGTCTCTGACAGCAACGTCGATATCGGCCTGCAGCCGGCCAAGGATG GAAGCGGCAAGGTTTCGCCCGACCGTCAGCGTGGCACGATCGACGCCAAGAATATGCAGTGGGCCTTCCGTTCGGCCGAC GCTGCCCGCAAGAGCACGAAATCGCCGGTCGGCGCCGTCGCCCCCGGTGATGTCGTCTACGTCGCAAAGCTCGGCGGCGA CGCCTCGACCTCCTATCGCCTGCAGCAGCCGCCGAAGGTGCAGGGTGGCCTGGTCGCCATGGATCCGAAGACCGGCCGCG TGCTCGCCATGGTCGGCGGCTTCTCCTATTCGCAGTCGGAATTCAACCGCGCCACCCAGGCGATGCGCCAGCCGGGCTCC TCGTTCAAGCCCTTCGTCTACGCCGCCGCGATGGACAACGGCTATACGCCGGCCTCCGTCATCATGGATGCGCCGATCGA GATCGTCTCCGGCGGCCAGGTCTGGAAGCCGGAAAACTACGGCGGCGAAGTCGGTGGCCCCTCGACGCTGCGCTCGGGCA TCGAGCATTCGCGCAACCTGATGACGGTGCGCTTGGCGAACGACCTCGGCATGAACATCGTCGCCGAGTATGCCGAACGC TTCGGCATCTACGATCATATGCTGCCGGTTCTCTCCATGTCGCTCGGCGCCGGCGACACCACCGTGCTGCGCATGGTTTC GGCCTATTCGGTCATTGCCAATGGCGGCAAGCAGATCAAGCCGACATTGATCGACCGCATCCAGGACCGCTACGGCAAGA CGATCTTCAAGCATGAGGAGCGTCTCTGTGAGGGCTGTAATGCCGGCGACTGGCAGAACCAGGAAGAGCCGAATGTCGTC GACAACCGCGAAACCGTTCTCGACCCGATGACTGCCTATCAGATCACCTCGATGATGCAGGGCGTCATCCAGCGCGGCAC CGCCGCCGGCAAGGTCGATCTCGGCGGCCGCGACGTTGCCGGCAAGACCGGCACCACCAACGACGAGAAGGACGCCTGGT TCGTCGGCTTCACCCCGGATCTGGTCGCCGGCCTTTATATGGGCTTCGATACGCCGGCCCCGCTCGGCCGCGGCGGCACC GGCGGCGGTCTCTCCGCCCCGATCTTCAACGAATTCATGCAGGTCGCCGTCAAGGATGCGCCGGAATCGAAATTCGTCAT TCCGCCGGGCATGAACTTGATTTCGATCGACCGCAAGACCGGCATGGCTGCCGTTGACGGCGACCCGAACACCATCATCG AGGCCTTCAAACCAGGCACCGGCCCGGCCGACAGCTTCTCCGTCATTGGCATGGACAGCACCATGGCGCCGGAAGAGATC CTGAAGACCTCGCCGCAGGCAAACCAAGCCGTCCAGACCGGCACGCCCGGCCTGTTCTGA
Upstream 100 bases:
>100_bases GCGCTCATGGAGTAAGCCGCGCAACGTGCAAATTGCCTTGATCCGTGCAATCGTTGCGTTCTGCGCCGATTGAAGATCGA AGAGACCGGTAGCTGAAAAT
Downstream 100 bases:
>100_bases CCATCGCGGAATTTTGAACGCCCGCCGCGGCTCTTTACATCCGCGGCGGGCGTCTCTACAGCAATTCCAGCAAAAGTGCA CAGCGGTTTTGCGTCCGGAA
Product: penicillin-binding protein, 1A family
Products: NA
Alternate protein names: PBP-1a; PBP1a; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 819; Mature: 819
Protein sequence:
>819_residues MVRLFGYFFGMACVLFLVAAAGVAIYLANVAKDLPDYAVLNSYAPPVTTRVHAGNGALMAEYAKEKRLFLPIQAIPDRVK AAFLSAEDKNFYNHPGVDLTGLGRAILVNLQNFGSGRRPVGASTITQQVAKNFLLSSDQTIDRKIKEAILSFRIEQAYSK DKILELYLNEIFFGLNSYGIAGAALTYFNKSVTELTVAEAAYLASLPKGPANYHPFRHPEAALERRNWVIDRMVENGYVS QSDGEEAKKQPLGVTARTTGPSLFASDYFAEAVRRQLIDQYGEKVLYEGGLSVRTSLDPQMQLAARKALQDGLVTYDERR GFHGPIKQIDANGDWGKALADIPALADVPEWRLAVVLAVSDSNVDIGLQPAKDGSGKVSPDRQRGTIDAKNMQWAFRSAD AARKSTKSPVGAVAPGDVVYVAKLGGDASTSYRLQQPPKVQGGLVAMDPKTGRVLAMVGGFSYSQSEFNRATQAMRQPGS SFKPFVYAAAMDNGYTPASVIMDAPIEIVSGGQVWKPENYGGEVGGPSTLRSGIEHSRNLMTVRLANDLGMNIVAEYAER FGIYDHMLPVLSMSLGAGDTTVLRMVSAYSVIANGGKQIKPTLIDRIQDRYGKTIFKHEERLCEGCNAGDWQNQEEPNVV DNRETVLDPMTAYQITSMMQGVIQRGTAAGKVDLGGRDVAGKTGTTNDEKDAWFVGFTPDLVAGLYMGFDTPAPLGRGGT GGGLSAPIFNEFMQVAVKDAPESKFVIPPGMNLISIDRKTGMAAVDGDPNTIIEAFKPGTGPADSFSVIGMDSTMAPEEI LKTSPQANQAVQTGTPGLF
Sequences:
>Translated_819_residues MVRLFGYFFGMACVLFLVAAAGVAIYLANVAKDLPDYAVLNSYAPPVTTRVHAGNGALMAEYAKEKRLFLPIQAIPDRVK AAFLSAEDKNFYNHPGVDLTGLGRAILVNLQNFGSGRRPVGASTITQQVAKNFLLSSDQTIDRKIKEAILSFRIEQAYSK DKILELYLNEIFFGLNSYGIAGAALTYFNKSVTELTVAEAAYLASLPKGPANYHPFRHPEAALERRNWVIDRMVENGYVS QSDGEEAKKQPLGVTARTTGPSLFASDYFAEAVRRQLIDQYGEKVLYEGGLSVRTSLDPQMQLAARKALQDGLVTYDERR GFHGPIKQIDANGDWGKALADIPALADVPEWRLAVVLAVSDSNVDIGLQPAKDGSGKVSPDRQRGTIDAKNMQWAFRSAD AARKSTKSPVGAVAPGDVVYVAKLGGDASTSYRLQQPPKVQGGLVAMDPKTGRVLAMVGGFSYSQSEFNRATQAMRQPGS SFKPFVYAAAMDNGYTPASVIMDAPIEIVSGGQVWKPENYGGEVGGPSTLRSGIEHSRNLMTVRLANDLGMNIVAEYAER FGIYDHMLPVLSMSLGAGDTTVLRMVSAYSVIANGGKQIKPTLIDRIQDRYGKTIFKHEERLCEGCNAGDWQNQEEPNVV DNRETVLDPMTAYQITSMMQGVIQRGTAAGKVDLGGRDVAGKTGTTNDEKDAWFVGFTPDLVAGLYMGFDTPAPLGRGGT GGGLSAPIFNEFMQVAVKDAPESKFVIPPGMNLISIDRKTGMAAVDGDPNTIIEAFKPGTGPADSFSVIGMDSTMAPEEI LKTSPQANQAVQTGTPGLF >Mature_819_residues MVRLFGYFFGMACVLFLVAAAGVAIYLANVAKDLPDYAVLNSYAPPVTTRVHAGNGALMAEYAKEKRLFLPIQAIPDRVK AAFLSAEDKNFYNHPGVDLTGLGRAILVNLQNFGSGRRPVGASTITQQVAKNFLLSSDQTIDRKIKEAILSFRIEQAYSK DKILELYLNEIFFGLNSYGIAGAALTYFNKSVTELTVAEAAYLASLPKGPANYHPFRHPEAALERRNWVIDRMVENGYVS QSDGEEAKKQPLGVTARTTGPSLFASDYFAEAVRRQLIDQYGEKVLYEGGLSVRTSLDPQMQLAARKALQDGLVTYDERR GFHGPIKQIDANGDWGKALADIPALADVPEWRLAVVLAVSDSNVDIGLQPAKDGSGKVSPDRQRGTIDAKNMQWAFRSAD AARKSTKSPVGAVAPGDVVYVAKLGGDASTSYRLQQPPKVQGGLVAMDPKTGRVLAMVGGFSYSQSEFNRATQAMRQPGS SFKPFVYAAAMDNGYTPASVIMDAPIEIVSGGQVWKPENYGGEVGGPSTLRSGIEHSRNLMTVRLANDLGMNIVAEYAER FGIYDHMLPVLSMSLGAGDTTVLRMVSAYSVIANGGKQIKPTLIDRIQDRYGKTIFKHEERLCEGCNAGDWQNQEEPNVV DNRETVLDPMTAYQITSMMQGVIQRGTAAGKVDLGGRDVAGKTGTTNDEKDAWFVGFTPDLVAGLYMGFDTPAPLGRGGT GGGLSAPIFNEFMQVAVKDAPESKFVIPPGMNLISIDRKTGMAAVDGDPNTIIEAFKPGTGPADSFSVIGMDSTMAPEEI LKTSPQANQAVQTGTPGLF
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG5009
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI87082258, Length=854, Percent_Identity=33.4894613583138, Blast_Score=439, Evalue=1e-124, Organism=Escherichia coli, GI1786343, Length=280, Percent_Identity=36.4285714285714, Blast_Score=162, Evalue=9e-41, Organism=Escherichia coli, GI1788867, Length=186, Percent_Identity=36.5591397849462, Blast_Score=113, Evalue=4e-26, Organism=Escherichia coli, GI1789601, Length=156, Percent_Identity=36.5384615384615, Blast_Score=92, Evalue=2e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-; 3.4.-.-
Molecular weight: Translated: 88263; Mature: 88263
Theoretical pI: Translated: 6.17; Mature: 6.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVRLFGYFFGMACVLFLVAAAGVAIYLANVAKDLPDYAVLNSYAPPVTTRVHAGNGALMA CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEEEECCCCCHHH EYAKEKRLFLPIQAIPDRVKAAFLSAEDKNFYNHPGVDLTGLGRAILVNLQNFGSGRRPV HHHHCCCEEEEHHHCCHHHHHHHHCCCCCCCCCCCCCCHHHCCCEEEEEEHHCCCCCCCC GASTITQQVAKNFLLSSDQTIDRKIKEAILSFRIEQAYSKDKILELYLNEIFFGLNSYGI CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCH AGAALTYFNKSVTELTVAEAAYLASLPKGPANYHPFRHPEAALERRNWVIDRMVENGYVS HHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC QSDGEEAKKQPLGVTARTTGPSLFASDYFAEAVRRQLIDQYGEKVLYEGGLSVRTSLDPQ CCCCHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEECCCHH MQLAARKALQDGLVTYDERRGFHGPIKQIDANGDWGKALADIPALADVPEWRLAVVLAVS HHHHHHHHHHCCCCEEHHCCCCCCCHHHCCCCCCHHHHHHHCCCCCCCCCCEEEEEEEEE DSNVDIGLQPAKDGSGKVSPDRQRGTIDAKNMQWAFRSADAARKSTKSPVGAVAPGDVVY CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEE VAKLGGDASTSYRLQQPPKVQGGLVAMDPKTGRVLAMVGGFSYSQSEFNRATQAMRQPGS EEEECCCCCCCEEECCCCCCCCCEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC SFKPFVYAAAMDNGYTPASVIMDAPIEIVSGGQVWKPENYGGEVGGPSTLRSGIEHSRNL CCCCEEEEEECCCCCCHHHHHCCCCEEEECCCCEECCCCCCCCCCCHHHHHHHHHHCCCE MTVRLANDLGMNIVAEYAERFGIYDHMLPVLSMSLGAGDTTVLRMVSAYSVIANGGKQIK EEEEECCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC PTLIDRIQDRYGKTIFKHEERLCEGCNAGDWQNQEEPNVVDNRETVLDPMTAYQITSMMQ HHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHH GVIQRGTAAGKVDLGGRDVAGKTGTTNDEKDAWFVGFTPDLVAGLYMGFDTPAPLGRGGT HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCC GGGLSAPIFNEFMQVAVKDAPESKFVIPPGMNLISIDRKTGMAAVDGDPNTIIEAFKPGT CCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCEEEEECCCCCEEECCCCHHHHHHCCCCC GPADSFSVIGMDSTMAPEEILKTSPQANQAVQTGTPGLF CCCCCEEEEECCCCCCHHHHHHCCCCCCCHHHCCCCCCC >Mature Secondary Structure MVRLFGYFFGMACVLFLVAAAGVAIYLANVAKDLPDYAVLNSYAPPVTTRVHAGNGALMA CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEEEECCCCCHHH EYAKEKRLFLPIQAIPDRVKAAFLSAEDKNFYNHPGVDLTGLGRAILVNLQNFGSGRRPV HHHHCCCEEEEHHHCCHHHHHHHHCCCCCCCCCCCCCCHHHCCCEEEEEEHHCCCCCCCC GASTITQQVAKNFLLSSDQTIDRKIKEAILSFRIEQAYSKDKILELYLNEIFFGLNSYGI CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCH AGAALTYFNKSVTELTVAEAAYLASLPKGPANYHPFRHPEAALERRNWVIDRMVENGYVS HHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC QSDGEEAKKQPLGVTARTTGPSLFASDYFAEAVRRQLIDQYGEKVLYEGGLSVRTSLDPQ CCCCHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEECCCHH MQLAARKALQDGLVTYDERRGFHGPIKQIDANGDWGKALADIPALADVPEWRLAVVLAVS HHHHHHHHHHCCCCEEHHCCCCCCCHHHCCCCCCHHHHHHHCCCCCCCCCCEEEEEEEEE DSNVDIGLQPAKDGSGKVSPDRQRGTIDAKNMQWAFRSADAARKSTKSPVGAVAPGDVVY CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEE VAKLGGDASTSYRLQQPPKVQGGLVAMDPKTGRVLAMVGGFSYSQSEFNRATQAMRQPGS EEEECCCCCCCEEECCCCCCCCCEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC SFKPFVYAAAMDNGYTPASVIMDAPIEIVSGGQVWKPENYGGEVGGPSTLRSGIEHSRNL CCCCEEEEEECCCCCCHHHHHCCCCEEEECCCCEECCCCCCCCCCCHHHHHHHHHHCCCE MTVRLANDLGMNIVAEYAERFGIYDHMLPVLSMSLGAGDTTVLRMVSAYSVIANGGKQIK EEEEECCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC PTLIDRIQDRYGKTIFKHEERLCEGCNAGDWQNQEEPNVVDNRETVLDPMTAYQITSMMQ HHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHH GVIQRGTAAGKVDLGGRDVAGKTGTTNDEKDAWFVGFTPDLVAGLYMGFDTPAPLGRGGT HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCC GGGLSAPIFNEFMQVAVKDAPESKFVIPPGMNLISIDRKTGMAAVDGDPNTIIEAFKPGT CCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCEEEEECCCCCEEECCCCHHHHHHCCCCC GPADSFSVIGMDSTMAPEEILKTSPQANQAVQTGTPGLF CCCCCEEEEECCCCCCHHHHHHCCCCCCCHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA