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The map label for this gene is yciR [C]

Identifier: 209548847

GI number: 209548847

Start: 1256768

End: 1258897

Strand: Direct

Name: yciR [C]

Synonym: Rleg2_1244

Alternate gene names: 209548847

Gene position: 1256768-1258897 (Clockwise)

Preceding gene: 209548846

Following gene: 209548850

Centisome position: 27.69

GC content: 61.22

Gene sequence:

>2130_bases
ATGTCGTCGACTCTTGCAGGTAGGCACGTTCGCACCCAAACGTCTTCCATCATCGCGACGACGGTCTGTTTCCTGGTCGT
CGCCCTCATCCTGACCGGCCTGGTGGCGCATGTCGTCGTCACGATGACCCGGTCGGCGAATGAGATCGATGATGCCAGGG
CCACGCGCGCCGCCCGTGCGGCAATCGGAGCCTTTGTGGCGCGCCTGAGCGGGACGACGACTGATAATGCCATTTGGGAC
GATGCCTACAGTGCAGCCTCGTCTCCGACCGCCGCCGCTTGGGCCTATGAAAATTGGGGAAAGACCAGCGAGGATTACGC
GCTCTATGACGGCGCGGTCGTCATCGGTCCTGACCGGTCTTCGATCGTTTCCGCCTATGCCAAGGGCAAACCCTTCGAGC
CGAGCGACGTTTTCGGCGAAGACTTTTATCGGCAGATCAGAGTAGCTGCCGATCCCGCGCGGGCGCCAGTGATCAATTTC
ATCAAGACCGAAAGCGGTATCGCCCTGCTCGCATCGCAGGCGATCCAGCCATACGCGGCCACCACCGAGCTTCCGAAACT
CAGCACGCTGAGCTTCTACAAGGAATTTTCGCCCGAAGTTCTCGATGCGCTCTCGAACGAACATGAACTCGAAGGCTTGC
ACTTGGAGAAGAAGCCCAGGCCGGAATTTCTGAACACGCCGATCACCGACATGAAGGGGGCCGTCATCGGCTATCTCGTC
TGGCCGAGCAAAGCGCCGGGAAGCGCCGTGTTTCAGCAGGTGACGCCCTATGTCGCGGCCGCCGTCGCCATCCTTGCGCT
GTTCCTGATCGGCGTGCTGATGGTCGGCGCGTCCGAGGCGCGGCGCCTGCGCCAATTGGCGCAAGCAGCACTTTTCGAAG
CAGGCCATGACAGCCTGAGCGGCCTGTTGAACAGACATGGACTTCTCAGCCTGTTGGAAGAGTTTAAGAGTTCGGGCTCT
TCGCCGCCGCGGCTTTATCTGGTCGACCTCGATGGTTTCAAGGCCGTCAACGATGCCTGGGGGCATGCGGTCGGCGATGA
TTTGATCCGGCTGGTGTCGAACGCGCTGACCGCCTGCCACCCCGAAGTCGTTGCCGCCGCCCGGCTGGGAGGTGATGAAT
TTGCGCTGGTGCATGTTGGGTCCGCCACCTGCGAAGATATGGAAAAGACCATTCTGGCGCTGTTTGCCGAGCCCTTCAAA
ATCGACGGCCGGACGATCGAAGTCGGCGCAAGCATCGGAGCTGCCGCGGGCGACGCAGGCATCGAGCCCCTGGAGCTTCT
CCGCAGAGCCGATATGGCCCTCTATCGCGCCAAGGCAAATGGCCGAGGCCAGGCGATCGAATACGACCCCGAGCTGGACG
AGGAGCGCCAGCGGGTCGCCGAACTGGAAGGCCTGTTGAAAGGCGCCATCGGCAGCGGTGCGATCGAGGCGGTTTTTCAG
CCTCTCGTCTCTGCCACGACAGGTGCCGTCACCGGTCTTGAGGCGCTGGCGCGCTGGCGAACGTCGACAGGAAACATCAG
CCCGGAGATTTTCATTCCTCTTGCCGAGCGGTGCGGCCTCATCGATGCGCTCGGTGTTCACATGCTGAGAACATCGATCG
AGCATGCCAGGAGCTGGCCCGATCTGGCATTGTCCGTGAATGTCTCGCCAATCCAGCTCTGCAATCCCGAATTTGCCGCC
GAAGTGATTTCGGTCCTGCAGGAACTCGACTTCGATCCAAAGCGCCTGACCTTGGAGATCACCGAAGGCGTCCTGATGAC
CAATCCGGATCAGGCCCGGCGGTCGATAGACCAGCTCAAGCGCGTCGGTATAAAATTCGCGCTTGATGACTTTGGCTGCG
GCTACGCCAGCATTGGCGCGTTGCGGCAGTTCGGGTTCGATCGCATGAAGATCGACCGCTCGCTTGTATCAGCTCTCGAT
GAAGGCGCCAACGGCGCCGATGTCCTTCGGGCGACCATTTCGCTTGCCACCGCCCTGCAGATTCCCGTGACCGCCGAAGG
CATCGAGAACAGCCGCCAGGCGGCGATTTTGCGAGAGGCCGGCTGCGATCAGCTTCAGGGGTATCTAATCGGCAGACCGA
TGTCGGCACGCGACATATCCAGCAAGCTGGAAGAAGAGTCGGCCGCCTGA

Upstream 100 bases:

>100_bases
CATTGTCAAAATGCTATATCTCGTCTGCAGCGCATTGCGGACATGATGTCTCCTGCCGTCCCCCAGACATGGCCTTGCAA
TTAATCTTTGCGGAATTTGC

Downstream 100 bases:

>100_bases
CGCGCGATCGGCGGCTGATCTGTCAGGGCTGGATCACCACTGCAGATCCAGCCGGTCCAGCCCGTGGAAATGATAGACAT
CCTTGACCACGGGCGTCTTC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 709; Mature: 708

Protein sequence:

>709_residues
MSSTLAGRHVRTQTSSIIATTVCFLVVALILTGLVAHVVVTMTRSANEIDDARATRAARAAIGAFVARLSGTTTDNAIWD
DAYSAASSPTAAAWAYENWGKTSEDYALYDGAVVIGPDRSSIVSAYAKGKPFEPSDVFGEDFYRQIRVAADPARAPVINF
IKTESGIALLASQAIQPYAATTELPKLSTLSFYKEFSPEVLDALSNEHELEGLHLEKKPRPEFLNTPITDMKGAVIGYLV
WPSKAPGSAVFQQVTPYVAAAVAILALFLIGVLMVGASEARRLRQLAQAALFEAGHDSLSGLLNRHGLLSLLEEFKSSGS
SPPRLYLVDLDGFKAVNDAWGHAVGDDLIRLVSNALTACHPEVVAAARLGGDEFALVHVGSATCEDMEKTILALFAEPFK
IDGRTIEVGASIGAAAGDAGIEPLELLRRADMALYRAKANGRGQAIEYDPELDEERQRVAELEGLLKGAIGSGAIEAVFQ
PLVSATTGAVTGLEALARWRTSTGNISPEIFIPLAERCGLIDALGVHMLRTSIEHARSWPDLALSVNVSPIQLCNPEFAA
EVISVLQELDFDPKRLTLEITEGVLMTNPDQARRSIDQLKRVGIKFALDDFGCGYASIGALRQFGFDRMKIDRSLVSALD
EGANGADVLRATISLATALQIPVTAEGIENSRQAAILREAGCDQLQGYLIGRPMSARDISSKLEEESAA

Sequences:

>Translated_709_residues
MSSTLAGRHVRTQTSSIIATTVCFLVVALILTGLVAHVVVTMTRSANEIDDARATRAARAAIGAFVARLSGTTTDNAIWD
DAYSAASSPTAAAWAYENWGKTSEDYALYDGAVVIGPDRSSIVSAYAKGKPFEPSDVFGEDFYRQIRVAADPARAPVINF
IKTESGIALLASQAIQPYAATTELPKLSTLSFYKEFSPEVLDALSNEHELEGLHLEKKPRPEFLNTPITDMKGAVIGYLV
WPSKAPGSAVFQQVTPYVAAAVAILALFLIGVLMVGASEARRLRQLAQAALFEAGHDSLSGLLNRHGLLSLLEEFKSSGS
SPPRLYLVDLDGFKAVNDAWGHAVGDDLIRLVSNALTACHPEVVAAARLGGDEFALVHVGSATCEDMEKTILALFAEPFK
IDGRTIEVGASIGAAAGDAGIEPLELLRRADMALYRAKANGRGQAIEYDPELDEERQRVAELEGLLKGAIGSGAIEAVFQ
PLVSATTGAVTGLEALARWRTSTGNISPEIFIPLAERCGLIDALGVHMLRTSIEHARSWPDLALSVNVSPIQLCNPEFAA
EVISVLQELDFDPKRLTLEITEGVLMTNPDQARRSIDQLKRVGIKFALDDFGCGYASIGALRQFGFDRMKIDRSLVSALD
EGANGADVLRATISLATALQIPVTAEGIENSRQAAILREAGCDQLQGYLIGRPMSARDISSKLEEESAA
>Mature_708_residues
SSTLAGRHVRTQTSSIIATTVCFLVVALILTGLVAHVVVTMTRSANEIDDARATRAARAAIGAFVARLSGTTTDNAIWDD
AYSAASSPTAAAWAYENWGKTSEDYALYDGAVVIGPDRSSIVSAYAKGKPFEPSDVFGEDFYRQIRVAADPARAPVINFI
KTESGIALLASQAIQPYAATTELPKLSTLSFYKEFSPEVLDALSNEHELEGLHLEKKPRPEFLNTPITDMKGAVIGYLVW
PSKAPGSAVFQQVTPYVAAAVAILALFLIGVLMVGASEARRLRQLAQAALFEAGHDSLSGLLNRHGLLSLLEEFKSSGSS
PPRLYLVDLDGFKAVNDAWGHAVGDDLIRLVSNALTACHPEVVAAARLGGDEFALVHVGSATCEDMEKTILALFAEPFKI
DGRTIEVGASIGAAAGDAGIEPLELLRRADMALYRAKANGRGQAIEYDPELDEERQRVAELEGLLKGAIGSGAIEAVFQP
LVSATTGAVTGLEALARWRTSTGNISPEIFIPLAERCGLIDALGVHMLRTSIEHARSWPDLALSVNVSPIQLCNPEFAAE
VISVLQELDFDPKRLTLEITEGVLMTNPDQARRSIDQLKRVGIKFALDDFGCGYASIGALRQFGFDRMKIDRSLVSALDE
GANGADVLRATISLATALQIPVTAEGIENSRQAAILREAGCDQLQGYLIGRPMSARDISSKLEEESAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=472, Percent_Identity=33.0508474576271, Blast_Score=226, Evalue=6e-60,
Organism=Escherichia coli, GI87081921, Length=412, Percent_Identity=29.126213592233, Blast_Score=172, Evalue=6e-44,
Organism=Escherichia coli, GI1787055, Length=251, Percent_Identity=34.2629482071713, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI226510982, Length=359, Percent_Identity=29.2479108635098, Blast_Score=132, Evalue=8e-32,
Organism=Escherichia coli, GI87081743, Length=247, Percent_Identity=31.5789473684211, Blast_Score=129, Evalue=9e-31,
Organism=Escherichia coli, GI1788502, Length=243, Percent_Identity=32.9218106995885, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI87081845, Length=254, Percent_Identity=31.1023622047244, Blast_Score=122, Evalue=7e-29,
Organism=Escherichia coli, GI1786507, Length=231, Percent_Identity=33.7662337662338, Blast_Score=119, Evalue=6e-28,
Organism=Escherichia coli, GI87082096, Length=403, Percent_Identity=25.8064516129032, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI87081980, Length=235, Percent_Identity=34.0425531914894, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1788849, Length=209, Percent_Identity=32.5358851674641, Blast_Score=112, Evalue=8e-26,
Organism=Escherichia coli, GI1790496, Length=255, Percent_Identity=26.6666666666667, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI1788381, Length=215, Percent_Identity=34.4186046511628, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787410, Length=165, Percent_Identity=28.4848484848485, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI145693134, Length=177, Percent_Identity=32.2033898305085, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1787262, Length=225, Percent_Identity=27.5555555555556, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787056, Length=177, Percent_Identity=31.0734463276836, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87081881, Length=197, Percent_Identity=28.9340101522843, Blast_Score=74, Evalue=5e-14,
Organism=Escherichia coli, GI87082007, Length=207, Percent_Identity=29.4685990338164, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1787802, Length=189, Percent_Identity=30.6878306878307, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788956, Length=164, Percent_Identity=34.7560975609756, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1786584, Length=178, Percent_Identity=29.2134831460674, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 75793; Mature: 75662

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTLAGRHVRTQTSSIIATTVCFLVVALILTGLVAHVVVTMTRSANEIDDARATRAARA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
AIGAFVARLSGTTTDNAIWDDAYSAASSPTAAAWAYENWGKTSEDYALYDGAVVIGPDRS
HHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHEEHHCCCCCCCCCEEECCEEEECCCHH
SIVSAYAKGKPFEPSDVFGEDFYRQIRVAADPARAPVINFIKTESGIALLASQAIQPYAA
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHCCCCHH
TTELPKLSTLSFYKEFSPEVLDALSNEHELEGLHLEKKPRPEFLNTPITDMKGAVIGYLV
CCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEEE
WPSKAPGSAVFQQVTPYVAAAVAILALFLIGVLMVGASEARRLRQLAQAALFEAGHDSLS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHH
GLLNRHGLLSLLEEFKSSGSSPPRLYLVDLDGFKAVNDAWGHAVGDDLIRLVSNALTACH
HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PEVVAAARLGGDEFALVHVGSATCEDMEKTILALFAEPFKIDGRTIEVGASIGAAAGDAG
HHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCEEECCEEEEECCCCCCCCCCCC
IEPLELLRRADMALYRAKANGRGQAIEYDPELDEERQRVAELEGLLKGAIGSGAIEAVFQ
CCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
PLVSATTGAVTGLEALARWRTSTGNISPEIFIPLAERCGLIDALGVHMLRTSIEHARSWP
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHHCCCC
DLALSVNVSPIQLCNPEFAAEVISVLQELDFDPKRLTLEITEGVLMTNPDQARRSIDQLK
CEEEEECCCCHHHCCHHHHHHHHHHHHHCCCCCCEEEEEEECCEEECCHHHHHHHHHHHH
RVGIKFALDDFGCGYASIGALRQFGFDRMKIDRSLVSALDEGANGADVLRATISLATALQ
HCCCEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
IPVTAEGIENSRQAAILREAGCDQLQGYLIGRPMSARDISSKLEEESAA
CCCCCCCCCCHHHHHHHHHCCHHHHCCEEECCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSTLAGRHVRTQTSSIIATTVCFLVVALILTGLVAHVVVTMTRSANEIDDARATRAARA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
AIGAFVARLSGTTTDNAIWDDAYSAASSPTAAAWAYENWGKTSEDYALYDGAVVIGPDRS
HHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHEEHHCCCCCCCCCEEECCEEEECCCHH
SIVSAYAKGKPFEPSDVFGEDFYRQIRVAADPARAPVINFIKTESGIALLASQAIQPYAA
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHCCCCHH
TTELPKLSTLSFYKEFSPEVLDALSNEHELEGLHLEKKPRPEFLNTPITDMKGAVIGYLV
CCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEEE
WPSKAPGSAVFQQVTPYVAAAVAILALFLIGVLMVGASEARRLRQLAQAALFEAGHDSLS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHH
GLLNRHGLLSLLEEFKSSGSSPPRLYLVDLDGFKAVNDAWGHAVGDDLIRLVSNALTACH
HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PEVVAAARLGGDEFALVHVGSATCEDMEKTILALFAEPFKIDGRTIEVGASIGAAAGDAG
HHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCEEECCEEEEECCCCCCCCCCCC
IEPLELLRRADMALYRAKANGRGQAIEYDPELDEERQRVAELEGLLKGAIGSGAIEAVFQ
CCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
PLVSATTGAVTGLEALARWRTSTGNISPEIFIPLAERCGLIDALGVHMLRTSIEHARSWP
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHHCCCC
DLALSVNVSPIQLCNPEFAAEVISVLQELDFDPKRLTLEITEGVLMTNPDQARRSIDQLK
CEEEEECCCCHHHCCHHHHHHHHHHHHHCCCCCCEEEEEEECCEEECCHHHHHHHHHHHH
RVGIKFALDDFGCGYASIGALRQFGFDRMKIDRSLVSALDEGANGADVLRATISLATALQ
HCCCEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
IPVTAEGIENSRQAAILREAGCDQLQGYLIGRPMSARDISSKLEEESAA
CCCCCCCCCCHHHHHHHHHCCHHHHCCEEECCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]