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The map label for this gene is rbcR [H]

Identifier: 209548839

GI number: 209548839

Start: 1250433

End: 1251311

Strand: Reverse

Name: rbcR [H]

Synonym: Rleg2_1236

Alternate gene names: 209548839

Gene position: 1251311-1250433 (Counterclockwise)

Preceding gene: 209548842

Following gene: 209548838

Centisome position: 27.57

GC content: 67.01

Gene sequence:

>879_bases
ATGGCGCTCAACCTCGATCAGCTCGCAACCTTCGTCAACGTCGCCGATCTCGGAAGCTTTACGGCGGCCGCCGACAAGGA
AGGGCTGACGCAGCCGGCCGTCAGCCTGCAGGTCAAGGGTCTCGAACAGCGGCTCGGCGTCCGGCTGATCGAGCGCGTCG
GACGGCGGGCGCAGCCGACCGCAGCAGGCCTCGAACTGCTGGCGCATTCAAGACGGTTGCTGCAGGACGCGGCCGCCGCC
GAGGAAGCGATGATGCCGCACAGGGATGGCGCCAGCGGCCGCGTGCGCATCGGCAGTGGCGGCACCGCGTCGATCCACTT
GCTTCCTCGCGCCATCGCCGCCGCCCGCAAATCCATGCCAGGCCTCGAAATCACCGTCCATATCGGCAATGCCGACGACA
TCTTGCGCGATCTGGAGGCCAACAGCCTCGATATCGCCGTCATCGCGCTGCCGGCCTCAGGACGGAACCTTGAGATCGAA
CCCTTCTACGAGGAGGAATTGCTGGCCGTCGCGCCCGCCGGCAGCCGCATGCCCGATGGCGGACCGGACGCTGCTTTCAT
GCGCGACAGGACGCTGTTGCTTTACGAGGGCGGCAATACGAGACGGGCAATCGACGCGTGGCTGGCCGCACCGGACACCC
GGATCCGCCCGGCCATGGAGTTCGGCAGCATCGAGGCAATCAAGGAACTGGTGGCCGTTGGGCTCGGCTGGTCGATCCTG
CCGGGGCTGGCGGTGAAGCGCGACCGCGCCGGGCTGGTGACGACATCATCGCTGCAGCCGAAGCTCACGCGCCGCCTCGG
CATGGTTCTGCGGCGGGACAAACATCTGACCCGCGGCCTTCGCGAAATGATGAAATGCCTGCGCGCGTTCGAGGGTTAG

Upstream 100 bases:

>100_bases
GGCCATCTCGTCTTCCTTTCTTGGGTGGATGAAAGATGCGCTGGAGAATGCCGCGAAGGAAGCTTATGGATATTATGAGA
AGCATAAGGATTTCTTTGGT

Downstream 100 bases:

>100_bases
CGGCTGCTTTCGACCGTGGCACGCTGCGTCAGGTCGGGCAGGTTCAAGCCCGTCACGGGCGACGCGAAAACATCCGATAC
GCCAGCGTCCGGCCAATAAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MALNLDQLATFVNVADLGSFTAAADKEGLTQPAVSLQVKGLEQRLGVRLIERVGRRAQPTAAGLELLAHSRRLLQDAAAA
EEAMMPHRDGASGRVRIGSGGTASIHLLPRAIAAARKSMPGLEITVHIGNADDILRDLEANSLDIAVIALPASGRNLEIE
PFYEEELLAVAPAGSRMPDGGPDAAFMRDRTLLLYEGGNTRRAIDAWLAAPDTRIRPAMEFGSIEAIKELVAVGLGWSIL
PGLAVKRDRAGLVTTSSLQPKLTRRLGMVLRRDKHLTRGLREMMKCLRAFEG

Sequences:

>Translated_292_residues
MALNLDQLATFVNVADLGSFTAAADKEGLTQPAVSLQVKGLEQRLGVRLIERVGRRAQPTAAGLELLAHSRRLLQDAAAA
EEAMMPHRDGASGRVRIGSGGTASIHLLPRAIAAARKSMPGLEITVHIGNADDILRDLEANSLDIAVIALPASGRNLEIE
PFYEEELLAVAPAGSRMPDGGPDAAFMRDRTLLLYEGGNTRRAIDAWLAAPDTRIRPAMEFGSIEAIKELVAVGLGWSIL
PGLAVKRDRAGLVTTSSLQPKLTRRLGMVLRRDKHLTRGLREMMKCLRAFEG
>Mature_291_residues
ALNLDQLATFVNVADLGSFTAAADKEGLTQPAVSLQVKGLEQRLGVRLIERVGRRAQPTAAGLELLAHSRRLLQDAAAAE
EAMMPHRDGASGRVRIGSGGTASIHLLPRAIAAARKSMPGLEITVHIGNADDILRDLEANSLDIAVIALPASGRNLEIEP
FYEEELLAVAPAGSRMPDGGPDAAFMRDRTLLLYEGGNTRRAIDAWLAAPDTRIRPAMEFGSIEAIKELVAVGLGWSILP
GLAVKRDRAGLVTTSSLQPKLTRRLGMVLRRDKHLTRGLREMMKCLRAFEG

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=287, Percent_Identity=32.0557491289199, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1790399, Length=297, Percent_Identity=29.96632996633, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1788748, Length=290, Percent_Identity=28.2758620689655, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI157672245, Length=279, Percent_Identity=28.673835125448, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1786401, Length=254, Percent_Identity=26.7716535433071, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI145693105, Length=288, Percent_Identity=25, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI87082132, Length=251, Percent_Identity=25.8964143426295, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788297, Length=244, Percent_Identity=29.9180327868852, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787879, Length=251, Percent_Identity=29.0836653386454, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1790262, Length=279, Percent_Identity=27.9569892473118, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87081904, Length=297, Percent_Identity=26.9360269360269, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788626, Length=145, Percent_Identity=33.7931034482759, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789639, Length=143, Percent_Identity=30.0699300699301, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788887, Length=252, Percent_Identity=26.1904761904762, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787601, Length=147, Percent_Identity=25.8503401360544, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787128, Length=147, Percent_Identity=29.9319727891156, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787806, Length=245, Percent_Identity=24.8979591836735, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31418; Mature: 31287

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS50931 HTH_LYSR ; PS00107 PROTEIN_KINASE_ATP ; PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALNLDQLATFVNVADLGSFTAAADKEGLTQPAVSLQVKGLEQRLGVRLIERVGRRAQPT
CCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHEEECCHHHHHHHHHHHHHCCCCCCH
AAGLELLAHSRRLLQDAAAAEEAMMPHRDGASGRVRIGSGGTASIHLLPRAIAAARKSMP
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEHHHHHHHHHHHCCC
GLEITVHIGNADDILRDLEANSLDIAVIALPASGRNLEIEPFYEEELLAVAPAGSRMPDG
CEEEEEEECCHHHHHHHCCCCCEEEEEEEECCCCCCEEECCCCCCCEEEECCCCCCCCCC
GPDAAFMRDRTLLLYEGGNTRRAIDAWLAAPDTRIRPAMEFGSIEAIKELVAVGLGWSIL
CCCCCEECCCEEEEEECCCCCHHHHHHHCCCCCCCCCHHHHCCHHHHHHHHHHCCCHHHH
PGLAVKRDRAGLVTTSSLQPKLTRRLGMVLRRDKHLTRGLREMMKCLRAFEG
CCCCEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ALNLDQLATFVNVADLGSFTAAADKEGLTQPAVSLQVKGLEQRLGVRLIERVGRRAQPT
CCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHEEECCHHHHHHHHHHHHHCCCCCCH
AAGLELLAHSRRLLQDAAAAEEAMMPHRDGASGRVRIGSGGTASIHLLPRAIAAARKSMP
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEHHHHHHHHHHHCCC
GLEITVHIGNADDILRDLEANSLDIAVIALPASGRNLEIEPFYEEELLAVAPAGSRMPDG
CEEEEEEECCHHHHHHHCCCCCEEEEEEEECCCCCCEEECCCCCCCEEEECCCCCCCCCC
GPDAAFMRDRTLLLYEGGNTRRAIDAWLAAPDTRIRPAMEFGSIEAIKELVAVGLGWSIL
CCCCCEECCCEEEEEECCCCCHHHHHHHCCCCCCCCCHHHHCCHHHHHHHHHHCCCHHHH
PGLAVKRDRAGLVTTSSLQPKLTRRLGMVLRRDKHLTRGLREMMKCLRAFEG
CCCCEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]