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The map label for this gene is nusB [H]

Identifier: 209548794

GI number: 209548794

Start: 1201320

End: 1201802

Strand: Direct

Name: nusB [H]

Synonym: Rleg2_1191

Alternate gene names: 209548794

Gene position: 1201320-1201802 (Clockwise)

Preceding gene: 209548793

Following gene: 209548795

Centisome position: 26.47

GC content: 62.73

Gene sequence:

>483_bases
ATGAACGACGACAAGACGGAACGGCCGGTCAAGACTGCAAACCAGCGGGGCGCTGCCCGTCTTGCTGCCGTTCAGGCACT
GTATCAGATGGATGTCGGCGGCACCGGCGTTCTGGAAATCGTCGCCGAATACGAGGCGCACCGTCTCGGTCAAGAACTCG
ACGGCGCGACCTATCTGAAGGCCGATGCCGGCTGGTTCCGTTCCATCGTCTCAGGCGTCGTGCGCGATCAGACCCGTCTC
GATCCGCTGATTGCCGCAGCCCTGCAGGATGACTGGGCCTTGTCGCGCCTCGACAGTACCGTGCGCGCCATCCTGCGCGC
CGGCGTCTTCGAGATCACCGACCGCAAGGACGTCCCGGTGGCGGTCATCGTCACCGAATATGTCGAGATCGCCCAGGCCT
TCTTCGATGACGACGAGCCGAAGCTCGTCAATGCGGTGCTCGACCGCATTGCAAAGCAGGTTCGCGGCGAGACGAAGAAG
TAA

Upstream 100 bases:

>100_bases
ATGGGCGCGCGCGCGCCGCTCGGACAAGGACAAGGGCGGATTTGCCGCTCGCGCAGCTCTGACGATGATCGAGCTGAAGC
AGAAACTGGGTGCATAACGA

Downstream 100 bases:

>100_bases
GTCTTTAGCCGCCAAACAATCTCCCTAAGTCTTTCTTCGCACTGCAACGGTTTTCGCTCGTTGCGGTCTTGACGCCACGT
GATCGACCACGCAATCTCCG

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQELDGATYLKADAGWFRSIVSGVVRDQTRL
DPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKDVPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQVRGETKK

Sequences:

>Translated_160_residues
MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQELDGATYLKADAGWFRSIVSGVVRDQTRL
DPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKDVPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQVRGETKK
>Mature_160_residues
MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQELDGATYLKADAGWFRSIVSGVVRDQTRL
DPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKDVPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQVRGETKK

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

Organism=Escherichia coli, GI1786618, Length=138, Percent_Identity=29.7101449275362, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 17642; Mature: 17642

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQELDGATYLK
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
ADAGWFRSIVSGVVRDQTRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKDVPV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCH
AVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQVRGETKK
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQELDGATYLK
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
ADAGWFRSIVSGVVRDQTRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKDVPV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCH
AVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQVRGETKK
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA