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The map label for this gene is xerC [H]

Identifier: 209548773

GI number: 209548773

Start: 1180073

End: 1181179

Strand: Direct

Name: xerC [H]

Synonym: Rleg2_1170

Alternate gene names: 209548773

Gene position: 1180073-1181179 (Clockwise)

Preceding gene: 209548772

Following gene: 209548774

Centisome position: 26.0

GC content: 58.18

Gene sequence:

>1107_bases
ATGGCTAAGTACGACAAGAAGGAATATCGCGTCGGCAACTACTGGCTCGGTCAACGGACCGGTAGTCCCGCGTGGTACCG
GTGCTTTTATGAAGATGGAACCCGCCGCACCAAGCGTGTGACCCTCGGCACCGATGATTATGAAGAAGCCAAGCGGCGTC
TTGACGCTTGGTACATGGACCAGCGCATGAGGATCGCTCAGGATCTTTCGCCTACGGACGTGACCCTGAAAGAGGTTTTC
AAGGATTACCTCGACAACCATGCCGTCAATCTGCGCTCGTACGAGAGCGTCAAGATCCTACTCCGGTATTGGGAAGAGCA
TTGGGGCGAAAAGGCCTCCGTTGCCGATGTGCGCAATGTCATCGAACAGGAGAAGTTTCGGACGGCGCTCTTTGCCAAGG
GTCTTGCCATTAATTCAGTGAACCGCACCCTCGAAGCGGGTAGGGCGGCAATTCGGCGCGCGTTCAAGAGGAACGTCATT
TCCGCGATGCCCTTTGTGGAAATCCTCCCATACGAGCGGGACAAGCCCAAGGGTCGCCCGCTGTCAGTCGAGGAAATCGG
CAAGCTCTACGCCGAGTGCGCCGATCACATGCGGCTCTTCATGATCCTGATGCTGGGTACCGGCGCCCGCAATGAAGCTA
TCTGCACCCTCACATGGGAACAGATCGATTTCGAGGCAGGCTTGATCTATCTCAATCCACCCGGCCGCAAGCAAACGTCC
AAACGTCGTCCTGTCGTGCGCATGACCCCGTTTGTTCGGGAGCAACTGAGCAAGTTCAACGATCGGGAAGGGCGCGTGCT
GTCGTTCCGGGGGAAGTCGTTCCGAACGGCCCATCAGGGTATCGGAAAGGCCGTTGGTCGGGCGAAACTCAAGGGCAAGG
TCACGCCGTACTCTTTCCGTCATACCGTAGCGCGGTGGCTGCGGAAGGAAGGGGTGAGCCCGTGGGAAGTTGGTGCCCAG
CTCGGGCACAAAATGCCGGGCTACAACATCACGGAAATGTACGCCTCGGCCTCGCCTGATTACCTCGAAAAGGCCGCCGA
AGCGATTGAAAAGCTGCTGCGCACCGCTATCCCGTTGGATGCCCCGCCAATCCCGCAAGGGCGATAG

Upstream 100 bases:

>100_bases
CGCAAAAAGGGTAAGGTGAAGTTCGTTCGGATGGGTGACCGTGAGGTAGCCTACCTCGGGATCAACATCGCCGACATGCT
CATCAAGGGCGTGAAGGACG

Downstream 100 bases:

>100_bases
TGCTTTACGACATCGCCGGTTTGATGGACAATAAAACCGCTGGTGGGTAGCCAGCGGTTTTTTCAATCCAACGAAAGTGA
GGTTCGTGGACTTCAAAAAG

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 367

Protein sequence:

>368_residues
MAKYDKKEYRVGNYWLGQRTGSPAWYRCFYEDGTRRTKRVTLGTDDYEEAKRRLDAWYMDQRMRIAQDLSPTDVTLKEVF
KDYLDNHAVNLRSYESVKILLRYWEEHWGEKASVADVRNVIEQEKFRTALFAKGLAINSVNRTLEAGRAAIRRAFKRNVI
SAMPFVEILPYERDKPKGRPLSVEEIGKLYAECADHMRLFMILMLGTGARNEAICTLTWEQIDFEAGLIYLNPPGRKQTS
KRRPVVRMTPFVREQLSKFNDREGRVLSFRGKSFRTAHQGIGKAVGRAKLKGKVTPYSFRHTVARWLRKEGVSPWEVGAQ
LGHKMPGYNITEMYASASPDYLEKAAEAIEKLLRTAIPLDAPPIPQGR

Sequences:

>Translated_368_residues
MAKYDKKEYRVGNYWLGQRTGSPAWYRCFYEDGTRRTKRVTLGTDDYEEAKRRLDAWYMDQRMRIAQDLSPTDVTLKEVF
KDYLDNHAVNLRSYESVKILLRYWEEHWGEKASVADVRNVIEQEKFRTALFAKGLAINSVNRTLEAGRAAIRRAFKRNVI
SAMPFVEILPYERDKPKGRPLSVEEIGKLYAECADHMRLFMILMLGTGARNEAICTLTWEQIDFEAGLIYLNPPGRKQTS
KRRPVVRMTPFVREQLSKFNDREGRVLSFRGKSFRTAHQGIGKAVGRAKLKGKVTPYSFRHTVARWLRKEGVSPWEVGAQ
LGHKMPGYNITEMYASASPDYLEKAAEAIEKLLRTAIPLDAPPIPQGR
>Mature_367_residues
AKYDKKEYRVGNYWLGQRTGSPAWYRCFYEDGTRRTKRVTLGTDDYEEAKRRLDAWYMDQRMRIAQDLSPTDVTLKEVFK
DYLDNHAVNLRSYESVKILLRYWEEHWGEKASVADVRNVIEQEKFRTALFAKGLAINSVNRTLEAGRAAIRRAFKRNVIS
AMPFVEILPYERDKPKGRPLSVEEIGKLYAECADHMRLFMILMLGTGARNEAICTLTWEQIDFEAGLIYLNPPGRKQTSK
RRPVVRMTPFVREQLSKFNDREGRVLSFRGKSFRTAHQGIGKAVGRAKLKGKVTPYSFRHTVARWLRKEGVSPWEVGAQL
GHKMPGYNITEMYASASPDYLEKAAEAIEKLLRTAIPLDAPPIPQGR

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 42477; Mature: 42346

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKYDKKEYRVGNYWLGQRTGSPAWYRCFYEDGTRRTKRVTLGTDDYEEAKRRLDAWYMD
CCCCCCCCCEECCEEECCCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHH
QRMRIAQDLSPTDVTLKEVFKDYLDNHAVNLRSYESVKILLRYWEEHWGEKASVADVRNV
HHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
IEQEKFRTALFAKGLAINSVNRTLEAGRAAIRRAFKRNVISAMPFVEILPYERDKPKGRP
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCC
LSVEEIGKLYAECADHMRLFMILMLGTGARNEAICTLTWEQIDFEAGLIYLNPPGRKQTS
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHCCCCCCEEEECCCCCCCHH
KRRPVVRMTPFVREQLSKFNDREGRVLSFRGKSFRTAHQGIGKAVGRAKLKGKVTPYSFR
HCCCEEEECHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH
HTVARWLRKEGVSPWEVGAQLGHKMPGYNITEMYASASPDYLEKAAEAIEKLLRTAIPLD
HHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
APPIPQGR
CCCCCCCC
>Mature Secondary Structure 
AKYDKKEYRVGNYWLGQRTGSPAWYRCFYEDGTRRTKRVTLGTDDYEEAKRRLDAWYMD
CCCCCCCCEECCEEECCCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHH
QRMRIAQDLSPTDVTLKEVFKDYLDNHAVNLRSYESVKILLRYWEEHWGEKASVADVRNV
HHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
IEQEKFRTALFAKGLAINSVNRTLEAGRAAIRRAFKRNVISAMPFVEILPYERDKPKGRP
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCC
LSVEEIGKLYAECADHMRLFMILMLGTGARNEAICTLTWEQIDFEAGLIYLNPPGRKQTS
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHCCCCCCEEEECCCCCCCHH
KRRPVVRMTPFVREQLSKFNDREGRVLSFRGKSFRTAHQGIGKAVGRAKLKGKVTPYSFR
HCCCEEEECHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH
HTVARWLRKEGVSPWEVGAQLGHKMPGYNITEMYASASPDYLEKAAEAIEKLLRTAIPLD
HHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
APPIPQGR
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12235376 [H]