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The map label for this gene is radA [H]

Identifier: 209548647

GI number: 209548647

Start: 1062629

End: 1064029

Strand: Reverse

Name: radA [H]

Synonym: Rleg2_1044

Alternate gene names: 209548647

Gene position: 1064029-1062629 (Counterclockwise)

Preceding gene: 209548649

Following gene: 209548646

Centisome position: 23.45

GC content: 67.31

Gene sequence:

>1401_bases
ATGGCGAAGGCCAGGACACAATTCATCTGCCAGAATTGCGGCACGGTTCATAACCGCTGGGCGGGCAAATGCGAGAACTG
CGGCGAGTGGAACACCATCGTCGAAGAAGATCCGATGGGCGGGATCGGTTCCGGTCCCGGCAAGACGCCGAAGAAGGGTC
GGCCGGTGGCGCTGACGGCGCTGTCGGGCGAGATCGAGGAGGCGCCGCGCATCCATACCGCCATGTCGGAGCTTGACCGG
GCGCTCGGCGGCGGCTTCGTGCGTGGGTCGGCGGTGCTGATCGGCGGCGATCCCGGTATCGGCAAATCGACGCTGCTGAT
GCAAGCGGCGGCCGCCCTTGCGCGGCGCGGCCACAAGATCATCTACGTCTCCGGCGAAGAAGCCGTCGCCCAGGTCCGGC
TGCGGGCGCAGCGCCTTGCGGCGGCCGATACCGACGTGATGCTGGCGGCGGAAACCAATGTCGAGGATATTCTGGCGACG
CTTGCCGAGGGCAAGCGGCCGGACCTCGTCATCATCGATTCCATCCAGACGCTGTGGAGCGAACTTGCCGAATCCGCCCC
GGGAACGGTGACGCAGGTGCGCACCGGCGTGCAGGCGATGATCCGTTTCGCCAAGCAGACGGGGGCCGCCATGGTGCTCG
TCGGGCATGTGACCAAGGACGGGCAGATCGCCGGCCCGCGCGTCGTCGAGCACATGGTCGATGCCGTGCTCTATTTCGAA
GGCGATCGCGGCCATCACTACCGCATCCTGCGCACGGTCAAGAACCGCTTCGGCCCGACCGACGAGATCGGCGTCTTCGA
AATGTCGGACAAGGGACTCCGCGAGGTCGCCAACCCCTCGGAGCTCTTCCTCGGCGAGCGCAACGAAAAATCGCCGGGTG
CAGCCGTCTTCGCCGGCATGGAGGGCACGCGCCCGGTGCTGGTCGAAGTCCAGGCGCTGGTGGCGCCGACCTCGCTCGGC
ACGCCCAGGCGCGCCGTGGTCGGCTGGGATTCGGCCCGGCTGTCGATGATCCTGGCGGTGCTGGAGGCCCATTGCGGCGT
CAGGCTCGGCCAGCACGACGTCTATCTCAATATCGCCGGCGGCTACCGCATCACCGAACCGGCCGCCGATCTCGCCGTCG
CCTCGGCGCTCGTTTCCTCGCTTGCCGGTATTGCCCTTCCCGCCGATTGCGTCTATTTCGGCGAAGTCAGCCTGTCGGGC
GCCATCCGGCCGGTTGCGCACACCGCCCAGCGCCTCAAGGAAGCCGAGAAGCTGGGCTTTTCCGCGGCATTGCTTCCGTC
CGCCTCTGCCGAACTGCCGAAGGGTTCCGGCGGGCGCTGGAGCGAGGTCGAAAGCCTGCCGGATCTGGTTGCGCGCATCG
CCGGGTCGAAGGGGGCGCTGCGTGTGGAAGACGAGGTTTGA

Upstream 100 bases:

>100_bases
TAGTTTTGATCCGTCGCGATAGCCATTATCTCAGGCACGACAATGATTCGATGAAGCATGCATCTGCTTCGCTCGAGACC
CCGGACTGAAAGAGTATTTG

Downstream 100 bases:

>100_bases
TCCTTTCATTGCCAAGATTGGTGGTGATATAGGAGGCACACGATAAGGCACGACACGGCCGCCCGGCGGCAGTCCTGGAG
TTGAATTTACATGCCCATTA

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 466; Mature: 465

Protein sequence:

>466_residues
MAKARTQFICQNCGTVHNRWAGKCENCGEWNTIVEEDPMGGIGSGPGKTPKKGRPVALTALSGEIEEAPRIHTAMSELDR
ALGGGFVRGSAVLIGGDPGIGKSTLLMQAAAALARRGHKIIYVSGEEAVAQVRLRAQRLAAADTDVMLAAETNVEDILAT
LAEGKRPDLVIIDSIQTLWSELAESAPGTVTQVRTGVQAMIRFAKQTGAAMVLVGHVTKDGQIAGPRVVEHMVDAVLYFE
GDRGHHYRILRTVKNRFGPTDEIGVFEMSDKGLREVANPSELFLGERNEKSPGAAVFAGMEGTRPVLVEVQALVAPTSLG
TPRRAVVGWDSARLSMILAVLEAHCGVRLGQHDVYLNIAGGYRITEPAADLAVASALVSSLAGIALPADCVYFGEVSLSG
AIRPVAHTAQRLKEAEKLGFSAALLPSASAELPKGSGGRWSEVESLPDLVARIAGSKGALRVEDEV

Sequences:

>Translated_466_residues
MAKARTQFICQNCGTVHNRWAGKCENCGEWNTIVEEDPMGGIGSGPGKTPKKGRPVALTALSGEIEEAPRIHTAMSELDR
ALGGGFVRGSAVLIGGDPGIGKSTLLMQAAAALARRGHKIIYVSGEEAVAQVRLRAQRLAAADTDVMLAAETNVEDILAT
LAEGKRPDLVIIDSIQTLWSELAESAPGTVTQVRTGVQAMIRFAKQTGAAMVLVGHVTKDGQIAGPRVVEHMVDAVLYFE
GDRGHHYRILRTVKNRFGPTDEIGVFEMSDKGLREVANPSELFLGERNEKSPGAAVFAGMEGTRPVLVEVQALVAPTSLG
TPRRAVVGWDSARLSMILAVLEAHCGVRLGQHDVYLNIAGGYRITEPAADLAVASALVSSLAGIALPADCVYFGEVSLSG
AIRPVAHTAQRLKEAEKLGFSAALLPSASAELPKGSGGRWSEVESLPDLVARIAGSKGALRVEDEV
>Mature_465_residues
AKARTQFICQNCGTVHNRWAGKCENCGEWNTIVEEDPMGGIGSGPGKTPKKGRPVALTALSGEIEEAPRIHTAMSELDRA
LGGGFVRGSAVLIGGDPGIGKSTLLMQAAAALARRGHKIIYVSGEEAVAQVRLRAQRLAAADTDVMLAAETNVEDILATL
AEGKRPDLVIIDSIQTLWSELAESAPGTVTQVRTGVQAMIRFAKQTGAAMVLVGHVTKDGQIAGPRVVEHMVDAVLYFEG
DRGHHYRILRTVKNRFGPTDEIGVFEMSDKGLREVANPSELFLGERNEKSPGAAVFAGMEGTRPVLVEVQALVAPTSLGT
PRRAVVGWDSARLSMILAVLEAHCGVRLGQHDVYLNIAGGYRITEPAADLAVASALVSSLAGIALPADCVYFGEVSLSGA
IRPVAHTAQRLKEAEKLGFSAALLPSASAELPKGSGGRWSEVESLPDLVARIAGSKGALRVEDEV

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=456, Percent_Identity=44.9561403508772, Blast_Score=384, Evalue=1e-108,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR020588
- InterPro:   IPR004504
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: NA

Molecular weight: Translated: 49173; Mature: 49042

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKARTQFICQNCGTVHNRWAGKCENCGEWNTIVEEDPMGGIGSGPGKTPKKGRPVALTA
CCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
LSGEIEEAPRIHTAMSELDRALGGGFVRGSAVLIGGDPGIGKSTLLMQAAAALARRGHKI
ECCCHHHCCHHHHHHHHHHHHHCCCEEECCEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
IYVSGEEAVAQVRLRAQRLAAADTDVMLAAETNVEDILATLAEGKRPDLVIIDSIQTLWS
EEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCCCEEEEHHHHHHHH
ELAESAPGTVTQVRTGVQAMIRFAKQTGAAMVLVGHVTKDGQIAGPRVVEHMVDAVLYFE
HHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHEEEEE
GDRGHHYRILRTVKNRFGPTDEIGVFEMSDKGLREVANPSELFLGERNEKSPGAAVFAGM
CCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHCCCHHHHCCCCCCCCCCCEEEECC
EGTRPVLVEVQALVAPTSLGTPRRAVVGWDSARLSMILAVLEAHCGVRLGQHDVYLNIAG
CCCCCEEEEEEHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCEECCCEEEEEEEC
GYRITEPAADLAVASALVSSLAGIALPADCVYFGEVSLSGAIRPVAHTAQRLKEAEKLGF
CEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEECEECCCCHHHHHHHHHHHHHHHHCCC
SAALLPSASAELPKGSGGRWSEVESLPDLVARIAGSKGALRVEDEV
CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCC
>Mature Secondary Structure 
AKARTQFICQNCGTVHNRWAGKCENCGEWNTIVEEDPMGGIGSGPGKTPKKGRPVALTA
CCHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
LSGEIEEAPRIHTAMSELDRALGGGFVRGSAVLIGGDPGIGKSTLLMQAAAALARRGHKI
ECCCHHHCCHHHHHHHHHHHHHCCCEEECCEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
IYVSGEEAVAQVRLRAQRLAAADTDVMLAAETNVEDILATLAEGKRPDLVIIDSIQTLWS
EEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCCCEEEEHHHHHHHH
ELAESAPGTVTQVRTGVQAMIRFAKQTGAAMVLVGHVTKDGQIAGPRVVEHMVDAVLYFE
HHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHEEEEE
GDRGHHYRILRTVKNRFGPTDEIGVFEMSDKGLREVANPSELFLGERNEKSPGAAVFAGM
CCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHCCCHHHHCCCCCCCCCCCEEEECC
EGTRPVLVEVQALVAPTSLGTPRRAVVGWDSARLSMILAVLEAHCGVRLGQHDVYLNIAG
CCCCCEEEEEEHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCEECCCEEEEEEEC
GYRITEPAADLAVASALVSSLAGIALPADCVYFGEVSLSGAIRPVAHTAQRLKEAEKLGF
CEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEECEECCCCHHHHHHHHHHHHHHHHCCC
SAALLPSASAELPKGSGGRWSEVESLPDLVARIAGSKGALRVEDEV
CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA