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The map label for this gene is rarD [C]

Identifier: 209548633

GI number: 209548633

Start: 1049906

End: 1050823

Strand: Reverse

Name: rarD [C]

Synonym: Rleg2_1030

Alternate gene names: 209548633

Gene position: 1050823-1049906 (Counterclockwise)

Preceding gene: 209548635

Following gene: 209548629

Centisome position: 23.16

GC content: 62.96

Gene sequence:

>918_bases
ATGTCGACCGATGCATCCGTTCCCCTGGCCAAGAACGAAGACAGTCCGCGCGGTTTCGCCTTCGCGCTGACGGCCTATCT
GCTCTGGGGCTTCCTGCCGATCTACATGAAGGCGGTGGCGCATATCTCGCCGGCCGAGGTGATTGCCCACCGCATCGTCT
GGTCGCTGCCGCTGGCCGGCATCGTGCTGATCGTGCTCGGACGGACACAGGACGTCGCCACGGCGCTGCGCTCGCCGCGC
ATGCTGGCGATGGCAGCGCTGACGGCGTCGCTGATCACCGTCAACTGGGGCACCTATGTCTGGGCGATCGGCGCCGGCCA
TTCGCTCGACGCAGCACTCGGTTACTTCATCAATCCGCTATTTAGCATCTTCCTCGGTGCAGTGCTGCTGAAGGAAAAGC
TGCAGCCGCTGCAGATCGCGGCGATCGTACTGGCGGCGCTTGCCGTCGCCATTCTGGCATTCGACAGCGGCGGCATTCCG
TGGGTGGCGCTGACGCTGGCAATCAGCTGGGGTTTCTATGCCTTGCTGCGCAAGACGCTGCCGCTCGGGCCGAACCAAGG
CTTCTTCCTCGAGGTGCTGATCCTCAGCGGCCCTGCCCTGCTCTATATCCTCTATCTCGAATTCGGCAGCGGCCAGGGTC
ATCTCTACCGAACCGGGCTTGCCGACACGACGCTGCTGCTCGGCTGCGGCGTCATCACCGCCGTGCCGCTGATGATCTAT
GCCAACGGCGCCAAGCTGCTGAAGCTGTCGACGATCGGCATCATGCAGTATATTGCGCCGACGATGATCTTCCTGATCGC
CGTCTTCATCTTTCACGAGCCGCTCGGCACGGCGCGCATGATCGCCTTCCCGCTGATCTGGGCGGGGCTGTTCCTCTATA
GCTGGTCAATGCTGAAGGGAAGCCGCGGAAGGATGTAG

Upstream 100 bases:

>100_bases
CTTCAAATACTCTTAGCCTTTATTCAACGAAATGAATTGGCCTATTCACGGCGCTTAAGCTAGGCCGGATCAGAAGCAGA
ACAAAGATGGAAACACCCCG

Downstream 100 bases:

>100_bases
CGCCGTTCTCTATCGCGAGCCGGAGCGTTGGCTCAAAGCCAGGCTAGCAGCGCCGTGCGGACGAGAATTCCAGTCAATGC
GCTCAAGACGGCAACCCCCG

Product: RarD protein, DMT superfamily transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MSTDASVPLAKNEDSPRGFAFALTAYLLWGFLPIYMKAVAHISPAEVIAHRIVWSLPLAGIVLIVLGRTQDVATALRSPR
MLAMAALTASLITVNWGTYVWAIGAGHSLDAALGYFINPLFSIFLGAVLLKEKLQPLQIAAIVLAALAVAILAFDSGGIP
WVALTLAISWGFYALLRKTLPLGPNQGFFLEVLILSGPALLYILYLEFGSGQGHLYRTGLADTTLLLGCGVITAVPLMIY
ANGAKLLKLSTIGIMQYIAPTMIFLIAVFIFHEPLGTARMIAFPLIWAGLFLYSWSMLKGSRGRM

Sequences:

>Translated_305_residues
MSTDASVPLAKNEDSPRGFAFALTAYLLWGFLPIYMKAVAHISPAEVIAHRIVWSLPLAGIVLIVLGRTQDVATALRSPR
MLAMAALTASLITVNWGTYVWAIGAGHSLDAALGYFINPLFSIFLGAVLLKEKLQPLQIAAIVLAALAVAILAFDSGGIP
WVALTLAISWGFYALLRKTLPLGPNQGFFLEVLILSGPALLYILYLEFGSGQGHLYRTGLADTTLLLGCGVITAVPLMIY
ANGAKLLKLSTIGIMQYIAPTMIFLIAVFIFHEPLGTARMIAFPLIWAGLFLYSWSMLKGSRGRM
>Mature_304_residues
STDASVPLAKNEDSPRGFAFALTAYLLWGFLPIYMKAVAHISPAEVIAHRIVWSLPLAGIVLIVLGRTQDVATALRSPRM
LAMAALTASLITVNWGTYVWAIGAGHSLDAALGYFINPLFSIFLGAVLLKEKLQPLQIAAIVLAALAVAILAFDSGGIPW
VALTLAISWGFYALLRKTLPLGPNQGFFLEVLILSGPALLYILYLEFGSGQGHLYRTGLADTTLLLGCGVITAVPLMIYA
NGAKLLKLSTIGIMQYIAPTMIFLIAVFIFHEPLGTARMIAFPLIWAGLFLYSWSMLKGSRGRM

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=290, Percent_Identity=33.1034482758621, Blast_Score=183, Evalue=1e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32882; Mature: 32751

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTDASVPLAKNEDSPRGFAFALTAYLLWGFLPIYMKAVAHISPAEVIAHRIVWSLPLAG
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
IVLIVLGRTQDVATALRSPRMLAMAALTASLITVNWGTYVWAIGAGHSLDAALGYFINPL
HHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHEEECCCEEEEECCCCCHHHHHHHHHHHH
FSIFLGAVLLKEKLQPLQIAAIVLAALAVAILAFDSGGIPWVALTLAISWGFYALLRKTL
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
PLGPNQGFFLEVLILSGPALLYILYLEFGSGQGHLYRTGLADTTLLLGCGVITAVPLMIY
CCCCCCCHHEEEHHHCCCHHEEEEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHHE
ANGAKLLKLSTIGIMQYIAPTMIFLIAVFIFHEPLGTARMIAFPLIWAGLFLYSWSMLKG
ECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
SRGRM
CCCCC
>Mature Secondary Structure 
STDASVPLAKNEDSPRGFAFALTAYLLWGFLPIYMKAVAHISPAEVIAHRIVWSLPLAG
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
IVLIVLGRTQDVATALRSPRMLAMAALTASLITVNWGTYVWAIGAGHSLDAALGYFINPL
HHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHEEECCCEEEEECCCCCHHHHHHHHHHHH
FSIFLGAVLLKEKLQPLQIAAIVLAALAVAILAFDSGGIPWVALTLAISWGFYALLRKTL
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
PLGPNQGFFLEVLILSGPALLYILYLEFGSGQGHLYRTGLADTTLLLGCGVITAVPLMIY
CCCCCCCHHEEEHHHCCCHHEEEEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHHE
ANGAKLLKLSTIGIMQYIAPTMIFLIAVFIFHEPLGTARMIAFPLIWAGLFLYSWSMLKG
ECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
SRGRM
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]