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The map label for this gene is yciR [C]

Identifier: 209548610

GI number: 209548610

Start: 1028867

End: 1030765

Strand: Reverse

Name: yciR [C]

Synonym: Rleg2_1007

Alternate gene names: 209548610

Gene position: 1030765-1028867 (Counterclockwise)

Preceding gene: 209548613

Following gene: 209548609

Centisome position: 22.71

GC content: 61.19

Gene sequence:

>1899_bases
ATGAAGGCTGAAGCGCTCTTCTGGCAGCAATGCAGCCAGGCCGTCACCGCCGATGGATCGGTCGATGCGCAGCGCCTGAT
GGAACTTGTCATCGCGACCTATCGTGTCCATGAAAGCGACTATGACGAGATCGAAAGAAGCGCGGAAACGCTGCTGAGGG
AGAACCATGCGCTGAGAGGCAATATGTCAGCCCTCAGCCAGGCATTCGACGGACAGCAGAGACTCTTCGAAATCATCCTC
AACAACCTGCCACTCGGTCTTAGCGTCTTTGACGCAGATCAGCGGCTGACGCTTTCAAACATTCGCTTCGGTCAGCTCTT
CGGCCTGACCCAGGCCGATGTCACTCCCGGCGCGACCATCGCCGATCTCATCGACAAAATGCGCGGTGCAGAAGGCACTG
GCTCCAAGCCGGGCCGGCGCGCCGGGCGACATTCCTCCGCAGCCGTAAAAAGCAGCGGCATCCGTCGGCGCGAATGGCTG
ATGGATGATGGCCGCATCATCCAGAGCATGGTGACCATCCTTGCCGACGGCAGCAATATCGCCATTCATGCCGATATTAC
CGAGGATCGAAAGGCCGCCGAGCGCATCGCCTATCTCGCCCACCACGACCCGCTGACCGGTCTTCCGAACCGCATCCATT
TCCGCGAGCAGGTCGATTCAGCACTCGCAGAGCGCAAACGGGACGAGCAGATCGCCCTCATTCACCTCAACCTCGACCGG
TTCAAATCGATCAACAACATGATGGGCGTGTCCGCCGGCGACACGATCCTGCAGCAGGTCGCCGCGCGCATCCGGGCCTC
GGCCGGTTCGGAGAACACCCTGGCGCGGCTGGGTTCGGACGAATTCGCCATCCTGCAGACGGGCAGACAGCAGCCGTGGA
ACGTGACGGCGCTGGCCGAGCAGATCCGCCGTGAGCTTTCCGAGCCATTCCTGCACGGCGAAAAACATATGGAGCTCAGC
GTCTCGATGGGGATCGCAGTCGCCCCGGGGGATGGCGAGGAAACCGATATCCTGCTGAAGAATGCCGGCGTGGCGCTGTC
GCATGCCAAGGCGGACGGGCGTAAGCGCGAGCGTTTCTTCGCCGGCGAGATGGAAGCGCAGATGCAGCTGCGCCACGCGC
TGGAGGCGGACCTCAGAGCAGCCATCGAGAAGGAAGAATTCGAGCTGCATTACCAGCCGCTCTATGACCTTTCGCAGCGG
CGCATCTGCGGCTTCGAGGCCCTAATCCGCTGGAACCATCCGATCCGCGGCCGTGTTGCGCCGATAGATTTCATTCCGCT
CGCCGAAGAGGTCGGCCTCATCGTCGATATCGGCCGCTGGGTTTTGCACCAAGCCTGCAACGATGCAGTAGAATGGCCTG
AAGACATCAAGGTCGCGGTCAACGTTTCGGCGATGCAGTTCAGCAGCAGCGACCTGACCAGTGATGTCGGCGAAGCGCTG
GCGGCGGCCTCATTGTCGCCGCTGCGGCTCGAGCTCGAAATCACCGAAAGCGTGCTGATGGAAAATCTCGGCGAGGTGCT
GCCGATCCTGCATGCGCTGAAGGAGCGCGGCATCCGCATTTCGATGGACGATTTCGGCACCGGCTACTCCTCGCTGAGCT
ATCTCTCGAGCTTCCCCTTCGACAAGATCAAGATCGACAAATCCTTCGTCAACGACATCGTCGACAACAAGGAAGCGCAT
GCGATCATGCACGCGATCATTCTGCTCGGCGATGCGCTCGGCATGCGCGTCACCGTCGAAGGCGTCGAGACGGCCGAGCA
GCTGGCGCTGCTGGAATGCGAGGAGTGCGACGAGATCCAGGGCTATCACATCAGCCGGCCGAGACCGGCCTGCGACGTGC
CCCATCTTCTCTCCCTGCCGCCGAAGAATGGTGGGGTAATGCATCTTCCGAGGTGCTGA

Upstream 100 bases:

>100_bases
AATTTCATGGCCACTTTTGGAAGAGTTTTCGATGTGATGAGGTACGTCCATCAACCGATGGCGACCGTGGCCGTCGCGGC
CGCCCTGCAGAGGCCTCGCC

Downstream 100 bases:

>100_bases
ACGGGCTTCAATTGCGACTCGCGCGACAAGCCGCTACACAATCGGCAACGGTCCCCGAGCCTTCGTTGTCGCGTGCTTCG
ACCGAGATTCTTCTTGCTCA

Product: PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 632; Mature: 632

Protein sequence:

>632_residues
MKAEALFWQQCSQAVTADGSVDAQRLMELVIATYRVHESDYDEIERSAETLLRENHALRGNMSALSQAFDGQQRLFEIIL
NNLPLGLSVFDADQRLTLSNIRFGQLFGLTQADVTPGATIADLIDKMRGAEGTGSKPGRRAGRHSSAAVKSSGIRRREWL
MDDGRIIQSMVTILADGSNIAIHADITEDRKAAERIAYLAHHDPLTGLPNRIHFREQVDSALAERKRDEQIALIHLNLDR
FKSINNMMGVSAGDTILQQVAARIRASAGSENTLARLGSDEFAILQTGRQQPWNVTALAEQIRRELSEPFLHGEKHMELS
VSMGIAVAPGDGEETDILLKNAGVALSHAKADGRKRERFFAGEMEAQMQLRHALEADLRAAIEKEEFELHYQPLYDLSQR
RICGFEALIRWNHPIRGRVAPIDFIPLAEEVGLIVDIGRWVLHQACNDAVEWPEDIKVAVNVSAMQFSSSDLTSDVGEAL
AAASLSPLRLELEITESVLMENLGEVLPILHALKERGIRISMDDFGTGYSSLSYLSSFPFDKIKIDKSFVNDIVDNKEAH
AIMHAIILLGDALGMRVTVEGVETAEQLALLECEECDEIQGYHISRPRPACDVPHLLSLPPKNGGVMHLPRC

Sequences:

>Translated_632_residues
MKAEALFWQQCSQAVTADGSVDAQRLMELVIATYRVHESDYDEIERSAETLLRENHALRGNMSALSQAFDGQQRLFEIIL
NNLPLGLSVFDADQRLTLSNIRFGQLFGLTQADVTPGATIADLIDKMRGAEGTGSKPGRRAGRHSSAAVKSSGIRRREWL
MDDGRIIQSMVTILADGSNIAIHADITEDRKAAERIAYLAHHDPLTGLPNRIHFREQVDSALAERKRDEQIALIHLNLDR
FKSINNMMGVSAGDTILQQVAARIRASAGSENTLARLGSDEFAILQTGRQQPWNVTALAEQIRRELSEPFLHGEKHMELS
VSMGIAVAPGDGEETDILLKNAGVALSHAKADGRKRERFFAGEMEAQMQLRHALEADLRAAIEKEEFELHYQPLYDLSQR
RICGFEALIRWNHPIRGRVAPIDFIPLAEEVGLIVDIGRWVLHQACNDAVEWPEDIKVAVNVSAMQFSSSDLTSDVGEAL
AAASLSPLRLELEITESVLMENLGEVLPILHALKERGIRISMDDFGTGYSSLSYLSSFPFDKIKIDKSFVNDIVDNKEAH
AIMHAIILLGDALGMRVTVEGVETAEQLALLECEECDEIQGYHISRPRPACDVPHLLSLPPKNGGVMHLPRC
>Mature_632_residues
MKAEALFWQQCSQAVTADGSVDAQRLMELVIATYRVHESDYDEIERSAETLLRENHALRGNMSALSQAFDGQQRLFEIIL
NNLPLGLSVFDADQRLTLSNIRFGQLFGLTQADVTPGATIADLIDKMRGAEGTGSKPGRRAGRHSSAAVKSSGIRRREWL
MDDGRIIQSMVTILADGSNIAIHADITEDRKAAERIAYLAHHDPLTGLPNRIHFREQVDSALAERKRDEQIALIHLNLDR
FKSINNMMGVSAGDTILQQVAARIRASAGSENTLARLGSDEFAILQTGRQQPWNVTALAEQIRRELSEPFLHGEKHMELS
VSMGIAVAPGDGEETDILLKNAGVALSHAKADGRKRERFFAGEMEAQMQLRHALEADLRAAIEKEEFELHYQPLYDLSQR
RICGFEALIRWNHPIRGRVAPIDFIPLAEEVGLIVDIGRWVLHQACNDAVEWPEDIKVAVNVSAMQFSSSDLTSDVGEAL
AAASLSPLRLELEITESVLMENLGEVLPILHALKERGIRISMDDFGTGYSSLSYLSSFPFDKIKIDKSFVNDIVDNKEAH
AIMHAIILLGDALGMRVTVEGVETAEQLALLECEECDEIQGYHISRPRPACDVPHLLSLPPKNGGVMHLPRC

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=431, Percent_Identity=35.7308584686775, Blast_Score=275, Evalue=8e-75,
Organism=Escherichia coli, GI87081921, Length=441, Percent_Identity=36.0544217687075, Blast_Score=265, Evalue=9e-72,
Organism=Escherichia coli, GI226510982, Length=416, Percent_Identity=26.9230769230769, Blast_Score=171, Evalue=1e-43,
Organism=Escherichia coli, GI1788502, Length=257, Percent_Identity=33.0739299610895, Blast_Score=146, Evalue=3e-36,
Organism=Escherichia coli, GI1790496, Length=235, Percent_Identity=34.0425531914894, Blast_Score=143, Evalue=3e-35,
Organism=Escherichia coli, GI87081845, Length=255, Percent_Identity=35.2941176470588, Blast_Score=133, Evalue=3e-32,
Organism=Escherichia coli, GI1786507, Length=235, Percent_Identity=35.3191489361702, Blast_Score=133, Evalue=4e-32,
Organism=Escherichia coli, GI87081980, Length=256, Percent_Identity=33.984375, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI87081743, Length=239, Percent_Identity=31.7991631799163, Blast_Score=116, Evalue=5e-27,
Organism=Escherichia coli, GI1787055, Length=397, Percent_Identity=25.9445843828715, Blast_Score=114, Evalue=3e-26,
Organism=Escherichia coli, GI1788849, Length=434, Percent_Identity=25.3456221198157, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI87082096, Length=267, Percent_Identity=29.9625468164794, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1788381, Length=450, Percent_Identity=25.3333333333333, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI87081881, Length=187, Percent_Identity=33.1550802139037, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI1788956, Length=130, Percent_Identity=33.0769230769231, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787410, Length=219, Percent_Identity=27.8538812785388, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787802, Length=186, Percent_Identity=27.9569892473118, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87081977, Length=202, Percent_Identity=25.2475247524752, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=28.8343558282209, Blast_Score=66, Evalue=8e-12,
Organism=Escherichia coli, GI1786584, Length=166, Percent_Identity=27.1084337349398, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 69988; Mature: 69988

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: PS50112 PAS ; PS00639 THIOL_PROTEASE_HIS ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAEALFWQQCSQAVTADGSVDAQRLMELVIATYRVHESDYDEIERSAETLLRENHALRG
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
NMSALSQAFDGQQRLFEIILNNLPLGLSVFDADQRLTLSNIRFGQLFGLTQADVTPGATI
CHHHHHHHHCHHHHHHHHHHHCCCCCEEEECCCCCEECCCCCHHHHCCCCCCCCCCCCHH
ADLIDKMRGAEGTGSKPGRRAGRHSSAAVKSSGIRRREWLMDDGRIIQSMVTILADGSNI
HHHHHHHCCCCCCCCCCCHHCCCCCHHHHHHCCCHHHHHHCCCHHHHHHHHHHHCCCCCE
AIHADITEDRKAAERIAYLAHHDPLTGLPNRIHFREQVDSALAERKRDEQIALIHLNLDR
EEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECHHH
FKSINNMMGVSAGDTILQQVAARIRASAGSENTLARLGSDEFAILQTGRQQPWNVTALAE
HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEEEECCCCCCCCHHHHHH
QIRRELSEPFLHGEKHMELSVSMGIAVAPGDGEETDILLKNAGVALSHAKADGRKRERFF
HHHHHHHHHHHCCCCCEEEEEEECEEECCCCCCCCEEEEECCCCEEEECCCCCHHHHHHH
AGEMEAQMQLRHALEADLRAAIEKEEFELHYQPLYDLSQRRICGFEALIRWNHPIRGRVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHCHHHHHHCCCCCCCCCC
PIDFIPLAEEVGLIVDIGRWVLHQACNDAVEWPEDIKVAVNVSAMQFSSSDLTSDVGEAL
CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCHHHHHHHHHH
AAASLSPLRLELEITESVLMENLGEVLPILHALKERGIRISMDDFGTGYSSLSYLSSFPF
HHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCC
DKIKIDKSFVNDIVDNKEAHAIMHAIILLGDALGMRVTVEGVETAEQLALLECEECDEIQ
CCEEECHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCCCCCCC
GYHISRPRPACDVPHLLSLPPKNGGVMHLPRC
CEECCCCCCCCCCCHHHCCCCCCCCEEECCCC
>Mature Secondary Structure
MKAEALFWQQCSQAVTADGSVDAQRLMELVIATYRVHESDYDEIERSAETLLRENHALRG
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
NMSALSQAFDGQQRLFEIILNNLPLGLSVFDADQRLTLSNIRFGQLFGLTQADVTPGATI
CHHHHHHHHCHHHHHHHHHHHCCCCCEEEECCCCCEECCCCCHHHHCCCCCCCCCCCCHH
ADLIDKMRGAEGTGSKPGRRAGRHSSAAVKSSGIRRREWLMDDGRIIQSMVTILADGSNI
HHHHHHHCCCCCCCCCCCHHCCCCCHHHHHHCCCHHHHHHCCCHHHHHHHHHHHCCCCCE
AIHADITEDRKAAERIAYLAHHDPLTGLPNRIHFREQVDSALAERKRDEQIALIHLNLDR
EEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECHHH
FKSINNMMGVSAGDTILQQVAARIRASAGSENTLARLGSDEFAILQTGRQQPWNVTALAE
HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEEEECCCCCCCCHHHHHH
QIRRELSEPFLHGEKHMELSVSMGIAVAPGDGEETDILLKNAGVALSHAKADGRKRERFF
HHHHHHHHHHHCCCCCEEEEEEECEEECCCCCCCCEEEEECCCCEEEECCCCCHHHHHHH
AGEMEAQMQLRHALEADLRAAIEKEEFELHYQPLYDLSQRRICGFEALIRWNHPIRGRVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHCHHHHHHCCCCCCCCCC
PIDFIPLAEEVGLIVDIGRWVLHQACNDAVEWPEDIKVAVNVSAMQFSSSDLTSDVGEAL
CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCHHHHHHHHHH
AAASLSPLRLELEITESVLMENLGEVLPILHALKERGIRISMDDFGTGYSSLSYLSSFPF
HHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCC
DKIKIDKSFVNDIVDNKEAHAIMHAIILLGDALGMRVTVEGVETAEQLALLECEECDEIQ
CCEEECHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCCCCCCC
GYHISRPRPACDVPHLLSLPPKNGGVMHLPRC
CEECCCCCCCCCCCHHHCCCCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]