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The map label for this gene is cycK [H]

Identifier: 209548525

GI number: 209548525

Start: 935301

End: 937289

Strand: Direct

Name: cycK [H]

Synonym: Rleg2_0922

Alternate gene names: 209548525

Gene position: 935301-937289 (Clockwise)

Preceding gene: 209548524

Following gene: 209548526

Centisome position: 20.61

GC content: 65.46

Gene sequence:

>1989_bases
ATGATCATCGAGATCGGCCATTACGCGCTGGTGCTGGCGCTGGCAACGGCGCTCATCCTCTCTGTCGTGCCGGTCATCGG
CGCCCGCCGCCACGACCGGGCGATGATGGATGTCGCCACCATCGGTTCGCTGGCGATGTTTGCGCTGGTCGTCTTCTCCT
TCGGCGTCTTGACCTATGCCCATGTCGTCTCCGACTTCTCGGTCGAGAACGTCTGGGAGAATTCGCATTCGCTGGTGCCG
CTGATCTATAAATATTCCGGCGTCTGGGGCAATCACGAGGGATCGATGATGCTCTGGCTGTTGATCCTGACGCTGTTCAG
CGCGCTGGTCGCCGTCTTCGGGCGCAATCTGCCGGAGACGCTGAAGGCCAATGTGCTCGCCGTGCAGGCCTGGATTTCGG
TCGCCTTCACGCTGTTCATCCTGCTGACCTCCAATCCCTTCCTGCGGCTCGATCCGGCACCCGCCGAGGGCCGCGACCTC
AATCCCGTCCTGCAGGATGTCGGCCTGGCGATCCACCCGCCGTTGCTCTATCTCGGCTATGTCGGCTTCTCCGTCTGCTT
CTCCTTTGCCGTCGCGGCTCTCCTCGAAGGTCGCATCGACGCCGCCTGGGCCCGCTGGGTGCGGCCTTGGACGCTTGCCG
CCTGGACCTTTCTGACGCTTGGCATCGCCATGGGCTCCTACTGGGCCTATTACGAACTCGGCTGGGGCGGCTGGTGGTTC
TGGGATCCGGTGGAAAACGCCTCCTTCATGCCATGGCTTGCCGGCACCGCGCTGTTGCATTCGGCCCTCGTCATGGAAAA
GCGCGAGGCGCTGAAGATCTGGACGGTGCTGCTGGCCATCCTCACCTTCTCGCTGTCGCTGATGGGCACCTTCCTGGTGC
GCTCCGGTGTGCTGACCTCGGTGCATGCTTTCGCCAGCGATCCCTCCCGCGGCGTCTTCATCCTCTGCATCCTGCTGATC
TTCATCGGCGGGGCGCTATCGCTGTTTGCCTTCCGCGCGCCGAAGCTTTCGGCCGGCGGGTTGTTTGCGCCGATTTCGCG
CGAGGGTGCGCTGGTCGTCAACAATCTGATCCTGACGGTTGCCTGCGGCACGGTCTTGACCGGCACGCTCTATCCACTGC
TGCTGGAAACGCTGACCGGCGACAAGATTTCCGTCGGCCCGCCCTTCTTCAACCTGACCTTCGGCCTGCTGATGGCGCCG
CTGATCGTCATCGTGCCCTTCGGGCCGCTGCTCGCCTGGAAGCGCGGCGATCTGCTCGGTGCCCTGCAGCGGCTCTATGT
CGTCGCCGGTATCGCCTTCGCTGCTGCACTGATCTTCTTCTATCTCCAGCATGGCGGGCCGGTGCTATCCGTGCTCGGCC
TGGCGGCCGGGCTGTTCCTGGTCTTCGGCGCGGTTGCCGATCTCTGGTATCGCGTCGGCATCGGCAAGGTTGCGGGCAGT
GTCGCCTGGCGCCGTCTGAGCGGCCTGCCGCGTTCGGCCTTCGGCACCGCTCTTGCCCATGCCGGGCTCGGCGTCACCGT
GCTCGGCATCGTCGCGGTGACGACCTTCCAGACCGAGCACGTCATCGAGATGAAGCCCGGCGAAACTGCCGATGCCGGTG
GCTACAGCCTGCATTTCGACGGCATGCAGCCGGCGACCGGGCCGAACTACACCGAGGAGCGCGGCCACTTCACCATCCGC
CGCGCCGGTGTCGCGGTTGCCGACACCTGGTCGGCCAAGCGTCTCTACACCGCCCGCCAGATGCCGACGACGGAAGCGGG
CATCCTGACCTTCGGCCTCAGCCAGCTCTACGTCTCGCTCGGCGACGCCACCAAGGACGGCGGCATCGTCGTGCGCATCT
GGTGGAAGCCGTTCATCCTCTGCATCTGGGGCGGCGCTCTGATCATGGCCTTCGGCGGCCTCGTCTCGCTGTCCGACCGA
CGCCTGCGTGTCGGCGCACCGCGCAGGAAGGCGAAGGCGGCAGCCCCGACGCTGGAGCCGGCGGAATGA

Upstream 100 bases:

>100_bases
AGCAGCAGGGGCTGTGGAAGGAAGGCCAGGGCGGCCAGGAGAGCCCAGGGAAAGAGGGTCAAGGCCAGGAAAATCCGGGC
GAGGAGGCGAAAGCGACGCA

Downstream 100 bases:

>100_bases
TGGGCTCTCTCCTTTTTCCCCCTTCTCCCCATCGGGGAGAAGATGCCCGAAGGGCAGATGAGGGGGCCGAGCGGCAGAGC
CGCGAGGAGCTTGAGCGCAA

Product: cytochrome C biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 662; Mature: 662

Protein sequence:

>662_residues
MIIEIGHYALVLALATALILSVVPVIGARRHDRAMMDVATIGSLAMFALVVFSFGVLTYAHVVSDFSVENVWENSHSLVP
LIYKYSGVWGNHEGSMMLWLLILTLFSALVAVFGRNLPETLKANVLAVQAWISVAFTLFILLTSNPFLRLDPAPAEGRDL
NPVLQDVGLAIHPPLLYLGYVGFSVCFSFAVAALLEGRIDAAWARWVRPWTLAAWTFLTLGIAMGSYWAYYELGWGGWWF
WDPVENASFMPWLAGTALLHSALVMEKREALKIWTVLLAILTFSLSLMGTFLVRSGVLTSVHAFASDPSRGVFILCILLI
FIGGALSLFAFRAPKLSAGGLFAPISREGALVVNNLILTVACGTVLTGTLYPLLLETLTGDKISVGPPFFNLTFGLLMAP
LIVIVPFGPLLAWKRGDLLGALQRLYVVAGIAFAAALIFFYLQHGGPVLSVLGLAAGLFLVFGAVADLWYRVGIGKVAGS
VAWRRLSGLPRSAFGTALAHAGLGVTVLGIVAVTTFQTEHVIEMKPGETADAGGYSLHFDGMQPATGPNYTEERGHFTIR
RAGVAVADTWSAKRLYTARQMPTTEAGILTFGLSQLYVSLGDATKDGGIVVRIWWKPFILCIWGGALIMAFGGLVSLSDR
RLRVGAPRRKAKAAAPTLEPAE

Sequences:

>Translated_662_residues
MIIEIGHYALVLALATALILSVVPVIGARRHDRAMMDVATIGSLAMFALVVFSFGVLTYAHVVSDFSVENVWENSHSLVP
LIYKYSGVWGNHEGSMMLWLLILTLFSALVAVFGRNLPETLKANVLAVQAWISVAFTLFILLTSNPFLRLDPAPAEGRDL
NPVLQDVGLAIHPPLLYLGYVGFSVCFSFAVAALLEGRIDAAWARWVRPWTLAAWTFLTLGIAMGSYWAYYELGWGGWWF
WDPVENASFMPWLAGTALLHSALVMEKREALKIWTVLLAILTFSLSLMGTFLVRSGVLTSVHAFASDPSRGVFILCILLI
FIGGALSLFAFRAPKLSAGGLFAPISREGALVVNNLILTVACGTVLTGTLYPLLLETLTGDKISVGPPFFNLTFGLLMAP
LIVIVPFGPLLAWKRGDLLGALQRLYVVAGIAFAAALIFFYLQHGGPVLSVLGLAAGLFLVFGAVADLWYRVGIGKVAGS
VAWRRLSGLPRSAFGTALAHAGLGVTVLGIVAVTTFQTEHVIEMKPGETADAGGYSLHFDGMQPATGPNYTEERGHFTIR
RAGVAVADTWSAKRLYTARQMPTTEAGILTFGLSQLYVSLGDATKDGGIVVRIWWKPFILCIWGGALIMAFGGLVSLSDR
RLRVGAPRRKAKAAAPTLEPAE
>Mature_662_residues
MIIEIGHYALVLALATALILSVVPVIGARRHDRAMMDVATIGSLAMFALVVFSFGVLTYAHVVSDFSVENVWENSHSLVP
LIYKYSGVWGNHEGSMMLWLLILTLFSALVAVFGRNLPETLKANVLAVQAWISVAFTLFILLTSNPFLRLDPAPAEGRDL
NPVLQDVGLAIHPPLLYLGYVGFSVCFSFAVAALLEGRIDAAWARWVRPWTLAAWTFLTLGIAMGSYWAYYELGWGGWWF
WDPVENASFMPWLAGTALLHSALVMEKREALKIWTVLLAILTFSLSLMGTFLVRSGVLTSVHAFASDPSRGVFILCILLI
FIGGALSLFAFRAPKLSAGGLFAPISREGALVVNNLILTVACGTVLTGTLYPLLLETLTGDKISVGPPFFNLTFGLLMAP
LIVIVPFGPLLAWKRGDLLGALQRLYVVAGIAFAAALIFFYLQHGGPVLSVLGLAAGLFLVFGAVADLWYRVGIGKVAGS
VAWRRLSGLPRSAFGTALAHAGLGVTVLGIVAVTTFQTEHVIEMKPGETADAGGYSLHFDGMQPATGPNYTEERGHFTIR
RAGVAVADTWSAKRLYTARQMPTTEAGILTFGLSQLYVSLGDATKDGGIVVRIWWKPFILCIWGGALIMAFGGLVSLSDR
RLRVGAPRRKAKAAAPTLEPAE

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=658, Percent_Identity=45.7446808510638, Blast_Score=510, Evalue=1e-145,
Organism=Escherichia coli, GI1790511, Length=613, Percent_Identity=37.6835236541599, Blast_Score=281, Evalue=1e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 71428; Mature: 71428

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIEIGHYALVLALATALILSVVPVIGARRHDRAMMDVATIGSLAMFALVVFSFGVLTYA
CEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HVVSDFSVENVWENSHSLVPLIYKYSGVWGNHEGSMMLWLLILTLFSALVAVFGRNLPET
HHHHCCCHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHH
LKANVLAVQAWISVAFTLFILLTSNPFLRLDPAPAEGRDLNPVLQDVGLAIHPPLLYLGY
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCHHHHHHH
VGFSVCFSFAVAALLEGRIDAAWARWVRPWTLAAWTFLTLGIAMGSYWAYYELGWGGWWF
HHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCEEE
WDPVENASFMPWLAGTALLHSALVMEKREALKIWTVLLAILTFSLSLMGTFLVRSGVLTS
ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHAFASDPSRGVFILCILLIFIGGALSLFAFRAPKLSAGGLFAPISREGALVVNNLILTV
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHHH
ACGTVLTGTLYPLLLETLTGDKISVGPPFFNLTFGLLMAPLIVIVPFGPLLAWKRGDLLG
HHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHH
ALQRLYVVAGIAFAAALIFFYLQHGGPVLSVLGLAAGLFLVFGAVADLWYRVGIGKVAGS
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAWRRLSGLPRSAFGTALAHAGLGVTVLGIVAVTTFQTEHVIEMKPGETADAGGYSLHFD
HHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEC
GMQPATGPNYTEERGHFTIRRAGVAVADTWSAKRLYTARQMPTTEAGILTFGLSQLYVSL
CCCCCCCCCCCCCCCCEEEEECCEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
GDATKDGGIVVRIWWKPFILCIWGGALIMAFGGLVSLSDRRLRVGAPRRKAKAAAPTLEP
CCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCHHCCCCCEEECCCCHHHHHCCCCCCCC
AE
CC
>Mature Secondary Structure
MIIEIGHYALVLALATALILSVVPVIGARRHDRAMMDVATIGSLAMFALVVFSFGVLTYA
CEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HVVSDFSVENVWENSHSLVPLIYKYSGVWGNHEGSMMLWLLILTLFSALVAVFGRNLPET
HHHHCCCHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHH
LKANVLAVQAWISVAFTLFILLTSNPFLRLDPAPAEGRDLNPVLQDVGLAIHPPLLYLGY
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCHHHHHHH
VGFSVCFSFAVAALLEGRIDAAWARWVRPWTLAAWTFLTLGIAMGSYWAYYELGWGGWWF
HHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCEEE
WDPVENASFMPWLAGTALLHSALVMEKREALKIWTVLLAILTFSLSLMGTFLVRSGVLTS
ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHAFASDPSRGVFILCILLIFIGGALSLFAFRAPKLSAGGLFAPISREGALVVNNLILTV
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHHH
ACGTVLTGTLYPLLLETLTGDKISVGPPFFNLTFGLLMAPLIVIVPFGPLLAWKRGDLLG
HHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHH
ALQRLYVVAGIAFAAALIFFYLQHGGPVLSVLGLAAGLFLVFGAVADLWYRVGIGKVAGS
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAWRRLSGLPRSAFGTALAHAGLGVTVLGIVAVTTFQTEHVIEMKPGETADAGGYSLHFD
HHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEC
GMQPATGPNYTEERGHFTIRRAGVAVADTWSAKRLYTARQMPTTEAGILTFGLSQLYVSL
CCCCCCCCCCCCCCCCEEEEECCEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
GDATKDGGIVVRIWWKPFILCIWGGALIMAFGGLVSLSDRRLRVGAPRRKAKAAAPTLEP
CCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCHHCCCCCEEECCCCHHHHHCCCCCCCC
AE
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]