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The map label for this gene is cycH [H]

Identifier: 209548523

GI number: 209548523

Start: 933614

End: 934792

Strand: Direct

Name: cycH [H]

Synonym: Rleg2_0920

Alternate gene names: 209548523

Gene position: 933614-934792 (Clockwise)

Preceding gene: 209548522

Following gene: 209548524

Centisome position: 20.57

GC content: 66.67

Gene sequence:

>1179_bases
ATGCTGTTCTGGATTCTCGTCGCCGTTCTGACGGCAGTCGTCGCTGCTGTCCTGCTCTACCCCCTTCTGCGCGGTGCGAA
GGCGGCTGAGAATATCCGTGCGGGCGAGGCGGCGGTCTATCGCGACCAGCTGCGCGAACTCGACCGCGATCTCAATGGCG
GGCTGATCACGCCTGAGGAGGCTGATTATGCCAGGGCGGAAATCGGCCGTCGGCTGATCGCCGTCTCTGGTGGCGAGCCG
GAAGAGGCGCCGAAACCTGCACGGCATCACCGTTTCACCGAGGCCTTCGTGCTGCTGGTGCTGCCGCTTCTCGGGCTCTG
TCTTTATTTGACGACGGGCAGGCCGAATCTGCCCTCGCAGCCGCTGGAAGCGCGGCTGGAAAATCCCGGCAACGATATGG
CGGTGCTGATCGTCAAGGCGGAACGGCACCTGGCCGAGAGCCCCGATGACGGCAAGGGCTGGGACGTGCTGGCGCCGATC
TATCTGCGCACCATGCGCGTGAACGACGCGCAACTGGCCTACCGCAACGCCATCCGGCTGCTCGGCCCGAGCCCCGCCCG
GCTGGACGGCCTTGCCGAGACGTTGATGGCGGTCTCCGAGGGTGTGGTGACGGAGGAAACGCGGCAGGTGCTGGAACAGT
CGCTGACGCTGGAACCCGACAATCCGCGCGCGCGCTTCTACGTCGCCCTCAGCATGGAGCAGGCAGGACGACGCGACGAG
GCGCGCCAGGCCTTCGAAGCGCTGGCGAAACAATCGCCGGCCGATGCGCCCTGGCTGCCGCTGGTCAACCAGCATATCGC
CATGAATGGCAGCGCGCCGGCAGGCGCCGGCCAGGCTGCCCCGGGCGCCAATCAGGCTGCCCCGGGCGCCGATACGGCTG
CCCCCGGCAATCCCACGCAGCAGGATGTGGCGGCGGCCGAAAGCATGAATGCTGGCGACCGGCAGCAGATGATCCGTGGC
ATGGTCGAGAGCCTCGACGCCAAGCTGAGCGCCGATCCGAACAATTTCGAGGGATGGGTGCGGCTCGTCCGCTCTTATGC
CGTGTTGAACGATAAGGATCGTGCCGCCGATGCGCTGAAGCGCGGGCTTGCCGCCTTTCCGCCGCCCGGCGAACAGGGCA
GCCAATTGCTGGCCCTGGCCAAGGAACTCGGCATAGCCACTGAGGGAGCGACGCAATGA

Upstream 100 bases:

>100_bases
GCTCGGCTGAATCAGGTAAATTGCGGCTTATAGCCTCAAATCTTCGTCATTCCGGCTTTGGCAGTTGGAATGGCGGCCCG
CTTCACGTATTTGGGCCGAT

Downstream 100 bases:

>100_bases
ACCGCAAGCAGAAGCGTCTGGCGGTGATCGCAGGCGGCATGGGCTTCATTGCCGCCGCCGTGCTGCTGGTCATGTTCGCC
TTCAGCCAGTCGGTCGCCTA

Product: cytochrome C biogenesis protein CcmI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MLFWILVAVLTAVVAAVLLYPLLRGAKAAENIRAGEAAVYRDQLRELDRDLNGGLITPEEADYARAEIGRRLIAVSGGEP
EEAPKPARHHRFTEAFVLLVLPLLGLCLYLTTGRPNLPSQPLEARLENPGNDMAVLIVKAERHLAESPDDGKGWDVLAPI
YLRTMRVNDAQLAYRNAIRLLGPSPARLDGLAETLMAVSEGVVTEETRQVLEQSLTLEPDNPRARFYVALSMEQAGRRDE
ARQAFEALAKQSPADAPWLPLVNQHIAMNGSAPAGAGQAAPGANQAAPGADTAAPGNPTQQDVAAAESMNAGDRQQMIRG
MVESLDAKLSADPNNFEGWVRLVRSYAVLNDKDRAADALKRGLAAFPPPGEQGSQLLALAKELGIATEGATQ

Sequences:

>Translated_392_residues
MLFWILVAVLTAVVAAVLLYPLLRGAKAAENIRAGEAAVYRDQLRELDRDLNGGLITPEEADYARAEIGRRLIAVSGGEP
EEAPKPARHHRFTEAFVLLVLPLLGLCLYLTTGRPNLPSQPLEARLENPGNDMAVLIVKAERHLAESPDDGKGWDVLAPI
YLRTMRVNDAQLAYRNAIRLLGPSPARLDGLAETLMAVSEGVVTEETRQVLEQSLTLEPDNPRARFYVALSMEQAGRRDE
ARQAFEALAKQSPADAPWLPLVNQHIAMNGSAPAGAGQAAPGANQAAPGADTAAPGNPTQQDVAAAESMNAGDRQQMIRG
MVESLDAKLSADPNNFEGWVRLVRSYAVLNDKDRAADALKRGLAAFPPPGEQGSQLLALAKELGIATEGATQ
>Mature_392_residues
MLFWILVAVLTAVVAAVLLYPLLRGAKAAENIRAGEAAVYRDQLRELDRDLNGGLITPEEADYARAEIGRRLIAVSGGEP
EEAPKPARHHRFTEAFVLLVLPLLGLCLYLTTGRPNLPSQPLEARLENPGNDMAVLIVKAERHLAESPDDGKGWDVLAPI
YLRTMRVNDAQLAYRNAIRLLGPSPARLDGLAETLMAVSEGVVTEETRQVLEQSLTLEPDNPRARFYVALSMEQAGRRDE
ARQAFEALAKQSPADAPWLPLVNQHIAMNGSAPAGAGQAAPGANQAAPGADTAAPGNPTQQDVAAAESMNAGDRQQMIRG
MVESLDAKLSADPNNFEGWVRLVRSYAVLNDKDRAADALKRGLAAFPPPGEQGSQLLALAKELGIATEGATQ

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42031; Mature: 42031

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS50293 TPR_REGION ; PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFWILVAVLTAVVAAVLLYPLLRGAKAAENIRAGEAAVYRDQLRELDRDLNGGLITPEE
CHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCC
ADYARAEIGRRLIAVSGGEPEEAPKPARHHRFTEAFVLLVLPLLGLCLYLTTGRPNLPSQ
HHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PLEARLENPGNDMAVLIVKAERHLAESPDDGKGWDVLAPIYLRTMRVNDAQLAYRNAIRL
HHHHHHCCCCCCEEEEEEECHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
LGPSPARLDGLAETLMAVSEGVVTEETRQVLEQSLTLEPDNPRARFYVALSMEQAGRRDE
CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEHHHCCCHHH
ARQAFEALAKQSPADAPWLPLVNQHIAMNGSAPAGAGQAAPGANQAAPGADTAAPGNPTQ
HHHHHHHHHHCCCCCCCCHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
QDVAAAESMNAGDRQQMIRGMVESLDAKLSADPNNFEGWVRLVRSYAVLNDKDRAADALK
HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
RGLAAFPPPGEQGSQLLALAKELGIATEGATQ
HCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLFWILVAVLTAVVAAVLLYPLLRGAKAAENIRAGEAAVYRDQLRELDRDLNGGLITPEE
CHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCC
ADYARAEIGRRLIAVSGGEPEEAPKPARHHRFTEAFVLLVLPLLGLCLYLTTGRPNLPSQ
HHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PLEARLENPGNDMAVLIVKAERHLAESPDDGKGWDVLAPIYLRTMRVNDAQLAYRNAIRL
HHHHHHCCCCCCEEEEEEECHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
LGPSPARLDGLAETLMAVSEGVVTEETRQVLEQSLTLEPDNPRARFYVALSMEQAGRRDE
CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEHHHCCCHHH
ARQAFEALAKQSPADAPWLPLVNQHIAMNGSAPAGAGQAAPGANQAAPGADTAAPGNPTQ
HHHHHHHHHHCCCCCCCCHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
QDVAAAESMNAGDRQQMIRGMVESLDAKLSADPNNFEGWVRLVRSYAVLNDKDRAADALK
HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
RGLAAFPPPGEQGSQLLALAKELGIATEGATQ
HCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]