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The map label for this gene is ykgD [C]

Identifier: 209548489

GI number: 209548489

Start: 903631

End: 904629

Strand: Reverse

Name: ykgD [C]

Synonym: Rleg2_0886

Alternate gene names: 209548489

Gene position: 904629-903631 (Counterclockwise)

Preceding gene: 209548492

Following gene: 209548486

Centisome position: 19.93

GC content: 64.96

Gene sequence:

>999_bases
ATGACCAGTGACCCGCTCTCTGAAATGCTCAATCTGCTCGATGCGCGCTGCCTTGTGTCCGGCGGGCTGATCGCCGGCGG
CGCCTGGGCGCTACAATTCCCCCGGCCGAACAGGATCAAGATCAGCGCCGTTGCCAAAGGCCGCTGCTGGCTTTTGCTCG
ACAATGGCAGTGAACCGATTCTCCTCGAGGCAGGCGACGTTGCGCTTCTGAACGGCCGGCACTCCTTCATCCTGGCGAGT
GACCTTGCAGTTGATCCGACCGATGCGGTCGGCGCCTTCAAAGAGAAGGTCGACGGCATGGCGCGCCACGGCGTCGGCGA
GGATTTCCATTATCTCGGCGGCCATATCGCGCTTGGACCGCAGGGCATGGAGCTGCTGTCCGACGTGCTGCCGCCGATCA
TCCACGTGCGCGCTGCCCTTGCCGAAGCCGGCGTGCTGCGCTGGCTGCTCGACCAGTTGGTGCGGGAGATGGCGGCAAAG
CGGCCAGGCGCGCTGCTCGCCTCGACCCAGCTTGCGCAGTTGATGTTCGTCCAGGTGCTGAGGGCGCACATCATGAGTTC
GGCGCCTATGACGGTCGGGTGGCTCCGAGCATTCGGCGACGATCGTATTGCGCCGGCGTTACGGCTGATGCACGGCGATC
CGGGCCGATCCTGGCAGCTTGGCGAACTGGCAAGGGCTGCCGGCATGTCACGCACGAGCTTTGCGTTGCGGTTCAAGACA
GTGGCGGGGGTTGCTCCGCTCACTTACCTCACCGGCTGGCGCATGCGTCTTGCCGAACGCGAGCTGCGGGAGGGCGGCAT
GCCGGTTTCGGCGCTGGCGCTTTCGCTCGGCTACACATCCGAAAGCGCCTTCAGCAACGCCTTCAAGCGGATGACCGGCA
TCGCGCCGAAGCGCTATCGCGCGGCGATGGCCCGCGAAGCCGGGCCGATCGATGAGGTGGTGGATGTCGAGGGCCAGGCA
ATGACGGCATATTATCGGCCGTTGAAGGCGGCATCTTAG

Upstream 100 bases:

>100_bases
CATGATCTGCCTCCGTGCTTGCGTGATGGCCTTGTATACGTCCGCGAAACGGGATTCTGAATGCTTGCAAATCCGGATTT
CCTGCTCCATCGTTCAAAAA

Downstream 100 bases:

>100_bases
AAGAGTGTCAAAGGTTTTCGGTCGACGTCAGGTTCTAAATCGCGCCGCAGCAAACTTGATTCATGCGACGCGCTTTAGCT
CATTGTTTTATGCATGTCGT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MTSDPLSEMLNLLDARCLVSGGLIAGGAWALQFPRPNRIKISAVAKGRCWLLLDNGSEPILLEAGDVALLNGRHSFILAS
DLAVDPTDAVGAFKEKVDGMARHGVGEDFHYLGGHIALGPQGMELLSDVLPPIIHVRAALAEAGVLRWLLDQLVREMAAK
RPGALLASTQLAQLMFVQVLRAHIMSSAPMTVGWLRAFGDDRIAPALRLMHGDPGRSWQLGELARAAGMSRTSFALRFKT
VAGVAPLTYLTGWRMRLAERELREGGMPVSALALSLGYTSESAFSNAFKRMTGIAPKRYRAAMAREAGPIDEVVDVEGQA
MTAYYRPLKAAS

Sequences:

>Translated_332_residues
MTSDPLSEMLNLLDARCLVSGGLIAGGAWALQFPRPNRIKISAVAKGRCWLLLDNGSEPILLEAGDVALLNGRHSFILAS
DLAVDPTDAVGAFKEKVDGMARHGVGEDFHYLGGHIALGPQGMELLSDVLPPIIHVRAALAEAGVLRWLLDQLVREMAAK
RPGALLASTQLAQLMFVQVLRAHIMSSAPMTVGWLRAFGDDRIAPALRLMHGDPGRSWQLGELARAAGMSRTSFALRFKT
VAGVAPLTYLTGWRMRLAERELREGGMPVSALALSLGYTSESAFSNAFKRMTGIAPKRYRAAMAREAGPIDEVVDVEGQA
MTAYYRPLKAAS
>Mature_331_residues
TSDPLSEMLNLLDARCLVSGGLIAGGAWALQFPRPNRIKISAVAKGRCWLLLDNGSEPILLEAGDVALLNGRHSFILASD
LAVDPTDAVGAFKEKVDGMARHGVGEDFHYLGGHIALGPQGMELLSDVLPPIIHVRAALAEAGVLRWLLDQLVREMAAKR
PGALLASTQLAQLMFVQVLRAHIMSSAPMTVGWLRAFGDDRIAPALRLMHGDPGRSWQLGELARAAGMSRTSFALRFKTV
AGVAPLTYLTGWRMRLAERELREGGMPVSALALSLGYTSESAFSNAFKRMTGIAPKRYRAAMAREAGPIDEVVDVEGQAM
TAYYRPLKAAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=171, Percent_Identity=32.1637426900585, Blast_Score=79, Evalue=5e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35769; Mature: 35638

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSDPLSEMLNLLDARCLVSGGLIAGGAWALQFPRPNRIKISAVAKGRCWLLLDNGSEPI
CCCCHHHHHHHHHHHHHHHCCCEEECCEEEEECCCCCCEEEEEEECCEEEEEEECCCCEE
LLEAGDVALLNGRHSFILASDLAVDPTDAVGAFKEKVDGMARHGVGEDFHYLGGHIALGP
EEECCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCEEEECC
QGMELLSDVLPPIIHVRAALAEAGVLRWLLDQLVREMAAKRPGALLASTQLAQLMFVQVL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
RAHIMSSAPMTVGWLRAFGDDRIAPALRLMHGDPGRSWQLGELARAAGMSRTSFALRFKT
HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHEEEHHH
VAGVAPLTYLTGWRMRLAERELREGGMPVSALALSLGYTSESAFSNAFKRMTGIAPKRYR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHH
AAMAREAGPIDEVVDVEGQAMTAYYRPLKAAS
HHHHHCCCCCHHHHCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure 
TSDPLSEMLNLLDARCLVSGGLIAGGAWALQFPRPNRIKISAVAKGRCWLLLDNGSEPI
CCCHHHHHHHHHHHHHHHCCCEEECCEEEEECCCCCCEEEEEEECCEEEEEEECCCCEE
LLEAGDVALLNGRHSFILASDLAVDPTDAVGAFKEKVDGMARHGVGEDFHYLGGHIALGP
EEECCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCEEEECC
QGMELLSDVLPPIIHVRAALAEAGVLRWLLDQLVREMAAKRPGALLASTQLAQLMFVQVL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
RAHIMSSAPMTVGWLRAFGDDRIAPALRLMHGDPGRSWQLGELARAAGMSRTSFALRFKT
HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHEEEHHH
VAGVAPLTYLTGWRMRLAERELREGGMPVSALALSLGYTSESAFSNAFKRMTGIAPKRYR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHH
AAMAREAGPIDEVVDVEGQAMTAYYRPLKAAS
HHHHHCCCCCHHHHCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8383668 [H]