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The map label for this gene is ybcS [C]

Identifier: 209548355

GI number: 209548355

Start: 771620

End: 772216

Strand: Direct

Name: ybcS [C]

Synonym: Rleg2_0751

Alternate gene names: 209548355

Gene position: 771620-772216 (Clockwise)

Preceding gene: 209548354

Following gene: 209548356

Centisome position: 17.0

GC content: 60.8

Gene sequence:

>597_bases
ATGCCGATCAATAAAATCAGGCCGTCCAAGCGCGCGGCGGGGGCGATTGCGGCTGCGCTCGTCGCCGCTGCTACGGGCGG
CTGGCACAGTATCAAGGATACGTCGCCCACGGTTCATCCGCCGGCCGTCATCCTGGCGAAGGACGCCTTGATCAGCACAT
GGGAAGGCATTGTTCTCGAAGCCCACTATGATCCCTACGCGAAGATCTACGATATCTGCTTCGGCAAGACGAGGCTGAAC
GGCAAGCCCATCCGGAAGGGGATGAAGTTCACCCGGGAGGAATGCGAAGACTTCCTCGAGACGGACCTGTTCAACGAATA
TTACCTGCCGCTGACGAAGCAGGTTCCGCAGTATGTCAACTTCCCCCTGAGCGTGCAGGCGGCGCAGCTTTCCGGCGCCT
ATAATTTCGGCGTCGGCGGCATGGTTCTTTCGAAGGCCATGGATGCTGCCAAGGCGGGCAAATGGCGTGAGGCATGCGAA
AAGCAGACAGCATGGAACCGGGCAGGCGGCCAAGTCGTGCGAGGGCTCGTTCTGCGCCGCGAGATGGGCGATGCCCAGCG
CATCGGTGAAGCCGAACTCTGCGTGAGTGGCATCTGA

Upstream 100 bases:

>100_bases
GGCCACGTGGATATTCCGCCGCGGCTGTTCGCAGCTCTCTCAGGCCTGACGGTCGCTGCGGCGTTCGTTGCTCGCATCAT
CGCTCAAAAGGGTATGTCCA

Downstream 100 bases:

>100_bases
TGTTCTCCCTGCTCGATACGCTCAAGATGGGCGCCGGCATCGCCGCCGGCCTGATGCTCTATCACCTCTATGCGGTTGCG
ATCGGCTATCCCTCGGCGGC

Product: glycoside hydrolase family 24

Products: Hydrolysed Peptidoglycan; Chitodextrin [C]

Alternate protein names: Lysozyme; Glycoside Hydrolase Family; Phage Related Lysozyme Protein

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MPINKIRPSKRAAGAIAAALVAAATGGWHSIKDTSPTVHPPAVILAKDALISTWEGIVLEAHYDPYAKIYDICFGKTRLN
GKPIRKGMKFTREECEDFLETDLFNEYYLPLTKQVPQYVNFPLSVQAAQLSGAYNFGVGGMVLSKAMDAAKAGKWREACE
KQTAWNRAGGQVVRGLVLRREMGDAQRIGEAELCVSGI

Sequences:

>Translated_198_residues
MPINKIRPSKRAAGAIAAALVAAATGGWHSIKDTSPTVHPPAVILAKDALISTWEGIVLEAHYDPYAKIYDICFGKTRLN
GKPIRKGMKFTREECEDFLETDLFNEYYLPLTKQVPQYVNFPLSVQAAQLSGAYNFGVGGMVLSKAMDAAKAGKWREACE
KQTAWNRAGGQVVRGLVLRREMGDAQRIGEAELCVSGI
>Mature_197_residues
PINKIRPSKRAAGAIAAALVAAATGGWHSIKDTSPTVHPPAVILAKDALISTWEGIVLEAHYDPYAKIYDICFGKTRLNG
KPIRKGMKFTREECEDFLETDLFNEYYLPLTKQVPQYVNFPLSVQAAQLSGAYNFGVGGMVLSKAMDAAKAGKWREACEK
QTAWNRAGGQVVRGLVLRREMGDAQRIGEAELCVSGI

Specific function: Essential For Lysis Of Bacterial Cell Wall, By Showing Cell Wall Hydrolyzing Activity (By Similarity). [C]

COG id: COG3772

COG function: function code R; Phage-related lysozyme (muraminidase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786768, Length=140, Percent_Identity=31.4285714285714, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.2.1.17 [C]

Molecular weight: Translated: 21629; Mature: 21498

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPINKIRPSKRAAGAIAAALVAAATGGWHSIKDTSPTVHPPAVILAKDALISTWEGIVLE
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEHHHHHHCCCCEEEE
AHYDPYAKIYDICFGKTRLNGKPIRKGMKFTREECEDFLETDLFNEYYLPLTKQVPQYVN
ECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHC
FPLSVQAAQLSGAYNFGVGGMVLSKAMDAAKAGKWREACEKQTAWNRAGGQVVRGLVLRR
CCCEEEHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
EMGDAQRIGEAELCVSGI
HHCHHHHCCCHHHHCCCC
>Mature Secondary Structure 
PINKIRPSKRAAGAIAAALVAAATGGWHSIKDTSPTVHPPAVILAKDALISTWEGIVLE
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEHHHHHHCCCCEEEE
AHYDPYAKIYDICFGKTRLNGKPIRKGMKFTREECEDFLETDLFNEYYLPLTKQVPQYVN
ECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHC
FPLSVQAAQLSGAYNFGVGGMVLSKAMDAAKAGKWREACEKQTAWNRAGGQVVRGLVLRR
CCCEEEHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
EMGDAQRIGEAELCVSGI
HHCHHHHCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Peptidoglycan (N-acetylmuraminic acid and N-acetyl-D-glucosamine Residues); Chitodextrin (N-acetyl-D-glucosamine residues) [C]

Specific reaction: Hydrolysis of beta-linkage between N-acetylmuraminic acid and N-acetyl- D-glucosamine residues in peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrin [C]

General reaction: O-Glycosyl bond hydrolysis; glycosyltransfer to saccharides other alcohols and H2O [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA