| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
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The map label for this gene is cya3 [H]
Identifier: 209548311
GI number: 209548311
Start: 729872
End: 731311
Strand: Reverse
Name: cya3 [H]
Synonym: Rleg2_0706
Alternate gene names: 209548311
Gene position: 731311-729872 (Counterclockwise)
Preceding gene: 209548313
Following gene: 209548310
Centisome position: 16.12
GC content: 65.62
Gene sequence:
>1440_bases ATGCGGCGCGGCAGGGATGTCGAGATCGGCGCCAAACCGCTCGCCATGCTCACCTATCTCGTCCGCAACGAGGGCCGCGT GGTCTCCAAGGATGAGCTTATGCAAGCGGTCTGGCCGGGTGTCATCGTCACCGAGGATTCACTGACCCAGGCGATCAGCC AGATCCGCAAGGCGATCGGCGCCGACGGGTTGATCCGCACCCTGTTCCGGCGCGGCTATCTGTTCGAGAACAAGCAATCG GTCGCCAACGCAATGCCGGAAAAGGCCTTTGTGCGGGCGCTTCCCCTGGCGGTTGCCCCGTTCCGCCTGATCGGTCCCGG CAGCGATGCGGCCTGGTTTGCCGAGGCCTTCTCCACCGAGGTCGCCTCCAGGCTGGCGCGCTACCACGACCTCGAGGTCA CCTGGTTGCCGGAGAAGGCAGTCCCCTCGCCTCTGCGCGCAACGCTCGGCTTCGACCTCAACGGCATGGTGCAGTCGGTC GACGGCATGATGAAGGTCACCGCCATGTTGACCGAAATGTCGAGCGGCCGGATCGTCTGGTCGGCCAGCTGGGACGGGGC GATCGCCAATGCGCTCGAAATCCAGTCGGAAATCGCCGAGGGCATCGTCAACGCGCTTGCCGGCCACGGCGTGCTGCTGA ACGTCGCCGCCGAGCACCTGCATCGACGGGCGGCGGCCGATCGCGATGCCTTCGAACTCTATCTGCGCGGGCGATATCAC ACCAATCGCTTCAACCGGGAAGACGCTGAAAAGGCGCTGCATTGTTTCCAGCGGGCAACCGAGATCGATCCCTTGTTTTC CCGCGCCTGGCTCGGTCTTGCCTGGTCGCATGATGAGCTCGCCTCGTTCGGCGTCGACATGAGCGAGAATGACGCTGCGG CGCTCAATTCCGCCAGGCGCGCCGTTGAACTCGATCCGTTCGACGCGGAGGCGCTGGTGGCGCTCGGCGAGATGCTCGGC AATATGGGGCAGATGGAAGCCGCGGAGGCGGCGCTGGATCGGGCGCTCGGTCTCGGCCCGTCGAACGCCGATGTGCTGGC GATGTTCTCCGGCTGGGCGCCGGTCTTCGGGCGCATCGAGGAGGGTATCGCTGCCGCTGAAAAGGCCCGGCGGCTCAATC CCAGCTGGCCGATCTGGTACGACAGTTCCTTCCGCCGCGCCTCCTTCCATGCCGGCCGATACGAGGAGGCCTTGTCCTTC GTCCTGCGCCGGCAACCGAACACGCACTCGATGGACGACCTGGTGACGGCTGCCTGCTGTGCCGTTGCCATCGGCCGGCC GGAAGAAGCCTCGGGCTGGCGCGACCAGGCGATGCTGATCGGCTACAAGTCGGCAAGCCAATATCTCGATCATGCCGGCG TGAAGCGGCCGGAGCAGCGCGCCCACATACTCGATCTGTTGAAGTCGGCGCAGTTCCCGGTCCTTCCCGGAGAGGCGTAG
Upstream 100 bases:
>100_bases CGCTCGCCTTGGTATAATTCCTGCGGTTAAAGCGGTCTCTGACATGACGGATTTGTTCACATTCGCTGACGTCACGCTTG ACCCCGAAAGGGGGCGGCTC
Downstream 100 bases:
>100_bases CGCGCGCCGCGCCGTCGCACCCGCAAACGTCGCTTTCAGCGAAAATTCAGCTCTTCGTCAGCTGCCCGTCGGTACATGGC CGGCCCGTGATGCCAGCATG
Product: CadC family transcriptional regulator
Products: NA
Alternate protein names: ATP pyrophosphate-lyase 3; Adenylyl cyclase 3 [H]
Number of amino acids: Translated: 479; Mature: 479
Protein sequence:
>479_residues MRRGRDVEIGAKPLAMLTYLVRNEGRVVSKDELMQAVWPGVIVTEDSLTQAISQIRKAIGADGLIRTLFRRGYLFENKQS VANAMPEKAFVRALPLAVAPFRLIGPGSDAAWFAEAFSTEVASRLARYHDLEVTWLPEKAVPSPLRATLGFDLNGMVQSV DGMMKVTAMLTEMSSGRIVWSASWDGAIANALEIQSEIAEGIVNALAGHGVLLNVAAEHLHRRAAADRDAFELYLRGRYH TNRFNREDAEKALHCFQRATEIDPLFSRAWLGLAWSHDELASFGVDMSENDAAALNSARRAVELDPFDAEALVALGEMLG NMGQMEAAEAALDRALGLGPSNADVLAMFSGWAPVFGRIEEGIAAAEKARRLNPSWPIWYDSSFRRASFHAGRYEEALSF VLRRQPNTHSMDDLVTAACCAVAIGRPEEASGWRDQAMLIGYKSASQYLDHAGVKRPEQRAHILDLLKSAQFPVLPGEA
Sequences:
>Translated_479_residues MRRGRDVEIGAKPLAMLTYLVRNEGRVVSKDELMQAVWPGVIVTEDSLTQAISQIRKAIGADGLIRTLFRRGYLFENKQS VANAMPEKAFVRALPLAVAPFRLIGPGSDAAWFAEAFSTEVASRLARYHDLEVTWLPEKAVPSPLRATLGFDLNGMVQSV DGMMKVTAMLTEMSSGRIVWSASWDGAIANALEIQSEIAEGIVNALAGHGVLLNVAAEHLHRRAAADRDAFELYLRGRYH TNRFNREDAEKALHCFQRATEIDPLFSRAWLGLAWSHDELASFGVDMSENDAAALNSARRAVELDPFDAEALVALGEMLG NMGQMEAAEAALDRALGLGPSNADVLAMFSGWAPVFGRIEEGIAAAEKARRLNPSWPIWYDSSFRRASFHAGRYEEALSF VLRRQPNTHSMDDLVTAACCAVAIGRPEEASGWRDQAMLIGYKSASQYLDHAGVKRPEQRAHILDLLKSAQFPVLPGEA >Mature_479_residues MRRGRDVEIGAKPLAMLTYLVRNEGRVVSKDELMQAVWPGVIVTEDSLTQAISQIRKAIGADGLIRTLFRRGYLFENKQS VANAMPEKAFVRALPLAVAPFRLIGPGSDAAWFAEAFSTEVASRLARYHDLEVTWLPEKAVPSPLRATLGFDLNGMVQSV DGMMKVTAMLTEMSSGRIVWSASWDGAIANALEIQSEIAEGIVNALAGHGVLLNVAAEHLHRRAAADRDAFELYLRGRYH TNRFNREDAEKALHCFQRATEIDPLFSRAWLGLAWSHDELASFGVDMSENDAAALNSARRAVELDPFDAEALVALGEMLG NMGQMEAAEAALDRALGLGPSNADVLAMFSGWAPVFGRIEEGIAAAEKARRLNPSWPIWYDSSFRRASFHAGRYEEALSF VLRRQPNTHSMDDLVTAACCAVAIGRPEEASGWRDQAMLIGYKSASQYLDHAGVKRPEQRAHILDLLKSAQFPVLPGEA
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 5 TPR repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR001440 - InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: PF00211 Guanylate_cyc; PF00515 TPR_1 [H]
EC number: =4.6.1.1 [H]
Molecular weight: Translated: 52591; Mature: 52591
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRGRDVEIGAKPLAMLTYLVRNEGRVVSKDELMQAVWPGVIVTEDSLTQAISQIRKAIG CCCCCCCCCCCHHHHHHHHHHHCCCCEECHHHHHHHHCCCEEEECHHHHHHHHHHHHHHC ADGLIRTLFRRGYLFENKQSVANAMPEKAFVRALPLAVAPFRLIGPGSDAAWFAEAFSTE CCHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHH VASRLARYHDLEVTWLPEKAVPSPLRATLGFDLNGMVQSVDGMMKVTAMLTEMSSGRIVW HHHHHHHHHCCEEEECCHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEE SASWDGAIANALEIQSEIAEGIVNALAGHGVLLNVAAEHLHRRAAADRDAFELYLRGRYH ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHEECCCC TNRFNREDAEKALHCFQRATEIDPLFSRAWLGLAWSHDELASFGVDMSENDAAALNSARR CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHH AVELDPFDAEALVALGEMLGNMGQMEAAEAALDRALGLGPSNADVLAMFSGWAPVFGRIE EEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHH EGIAAAEKARRLNPSWPIWYDSSFRRASFHAGRYEEALSFVLRRQPNTHSMDDLVTAACC HHHHHHHHHHCCCCCCCEEECCCCCHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH AVAIGRPEEASGWRDQAMLIGYKSASQYLDHAGVKRPEQRAHILDLLKSAQFPVLPGEA HHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MRRGRDVEIGAKPLAMLTYLVRNEGRVVSKDELMQAVWPGVIVTEDSLTQAISQIRKAIG CCCCCCCCCCCHHHHHHHHHHHCCCCEECHHHHHHHHCCCEEEECHHHHHHHHHHHHHHC ADGLIRTLFRRGYLFENKQSVANAMPEKAFVRALPLAVAPFRLIGPGSDAAWFAEAFSTE CCHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHH VASRLARYHDLEVTWLPEKAVPSPLRATLGFDLNGMVQSVDGMMKVTAMLTEMSSGRIVW HHHHHHHHHCCEEEECCHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEE SASWDGAIANALEIQSEIAEGIVNALAGHGVLLNVAAEHLHRRAAADRDAFELYLRGRYH ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHEECCCC TNRFNREDAEKALHCFQRATEIDPLFSRAWLGLAWSHDELASFGVDMSENDAAALNSARR CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHH AVELDPFDAEALVALGEMLGNMGQMEAAEAALDRALGLGPSNADVLAMFSGWAPVFGRIE EEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHH EGIAAAEKARRLNPSWPIWYDSSFRRASFHAGRYEEALSFVLRRQPNTHSMDDLVTAACC HHHHHHHHHHCCCCCCCEEECCCCCHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH AVAIGRPEEASGWRDQAMLIGYKSASQYLDHAGVKRPEQRAHILDLLKSAQFPVLPGEA HHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10485295; 11481432 [H]