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The map label for this gene is ctaC [H]

Identifier: 209548208

GI number: 209548208

Start: 627971

End: 628855

Strand: Direct

Name: ctaC [H]

Synonym: Rleg2_0602

Alternate gene names: 209548208

Gene position: 627971-628855 (Clockwise)

Preceding gene: 209548206

Following gene: 209548209

Centisome position: 13.84

GC content: 61.02

Gene sequence:

>885_bases
ATGAAGAAGGCTTATGCAGCCCTGACCACGCTGGTCTGTCTGCTTTTTGCTTCCGGCACATATGCCGACCAGCCGCTGCC
GTGGCAGGCAACGCTGCAGCCGGCGGCGACGCCGATCATGCGGGAAATCCATTGGTTCGAACAATATACCCTTTGGTTTA
TCGTTCCGATCACGCTCTTCGTTCTGGTCCTGCTCATTGTCGTCTGCGTCAAATTCCGCGCCAGCGCCAACCCGGTTCCT
TCGAAGACGAGCCACAACACGCTGATCGAGATTGCCTGGACCGTGGGGCCGGTCCTGGTGCTGCTTCTTCTCGCCATTCC
CTCGTTCAACCTGCTGACGGCGCAGCTGACGCTGCCTGAAAACCCCGACGTGACGATCAAGGCGACCGCCACCCAGTGGC
AGTGGAACTACGAATATGAAGGTTCGGGCGACAGCCCGCTGGCTTTCGACAGCTACCTCTTGAAGGATCAGGACCGCGCT
GCCGCCGGCAAGGAAGACAAGTCGGTTTATCCGAGACTTCTGGCCGTCGACAATGAGCTGGTCCTGCCTGTCAACAAGAC
GGTGCGCGTTCTCGTCACCTCGGCCCCGACCGACGTCATCCATGCTTTCGCCATGCCGTCCTTCGGCGTCAAGATCGATG
CCGTGCCGGGCCGCCTGAACGAGACCTGGTTCCGGGCCGAGCGCGAAGGCCTGTTCTATGGCCAGTGTTCCGAGCTCTGC
GGCAAGGACCATGCGTTCATGCCGATCGCCATCCGCGTCGTCTCCGAGGACAAGTACAAGCAGTGGCTGACGACAGCCGC
CAGCGACCTGCCCGGCGCCTACAAGACACTCATGGCCGCAACCGATGGTCCCGCAAAGACCCTCGACGTCGCCGAAGCAC
AGTAA

Upstream 100 bases:

>100_bases
CTGTTGCGGCAAATGCCAAACTGTGGTTTGAAGCGCTGAAGATGGCAAGGATTCTGCGTTCTATTTTGCAGGTCAAGCGC
TCGAGGGAGATTATAAGGTG

Downstream 100 bases:

>100_bases
TTAAGGGGATCGGGACAATGGCTGGACCTTCCGCTCACGACGATCATTCTCATGATCACGCCCATCACGACCACGCTCAT
GATGACCACGATCACGGGCA

Product: cytochrome C oxidase subunit II

Products: NA

Alternate protein names: Cytochrome aa3 subunit 2; Cytochrome c oxidase polypeptide II [H]

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MKKAYAALTTLVCLLFASGTYADQPLPWQATLQPAATPIMREIHWFEQYTLWFIVPITLFVLVLLIVVCVKFRASANPVP
SKTSHNTLIEIAWTVGPVLVLLLLAIPSFNLLTAQLTLPENPDVTIKATATQWQWNYEYEGSGDSPLAFDSYLLKDQDRA
AAGKEDKSVYPRLLAVDNELVLPVNKTVRVLVTSAPTDVIHAFAMPSFGVKIDAVPGRLNETWFRAEREGLFYGQCSELC
GKDHAFMPIAIRVVSEDKYKQWLTTAASDLPGAYKTLMAATDGPAKTLDVAEAQ

Sequences:

>Translated_294_residues
MKKAYAALTTLVCLLFASGTYADQPLPWQATLQPAATPIMREIHWFEQYTLWFIVPITLFVLVLLIVVCVKFRASANPVP
SKTSHNTLIEIAWTVGPVLVLLLLAIPSFNLLTAQLTLPENPDVTIKATATQWQWNYEYEGSGDSPLAFDSYLLKDQDRA
AAGKEDKSVYPRLLAVDNELVLPVNKTVRVLVTSAPTDVIHAFAMPSFGVKIDAVPGRLNETWFRAEREGLFYGQCSELC
GKDHAFMPIAIRVVSEDKYKQWLTTAASDLPGAYKTLMAATDGPAKTLDVAEAQ
>Mature_294_residues
MKKAYAALTTLVCLLFASGTYADQPLPWQATLQPAATPIMREIHWFEQYTLWFIVPITLFVLVLLIVVCVKFRASANPVP
SKTSHNTLIEIAWTVGPVLVLLLLAIPSFNLLTAQLTLPENPDVTIKATATQWQWNYEYEGSGDSPLAFDSYLLKDQDRA
AAGKEDKSVYPRLLAVDNELVLPVNKTVRVLVTSAPTDVIHAFAMPSFGVKIDAVPGRLNETWFRAEREGLFYGQCSELC
GKDHAFMPIAIRVVSEDKYKQWLTTAASDLPGAYKTLMAATDGPAKTLDVAEAQ

Specific function: Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) [H]

COG id: COG1622

COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase subunit 2 family [H]

Homologues:

Organism=Homo sapiens, GI251831110, Length=226, Percent_Identity=37.1681415929204, Blast_Score=154, Evalue=7e-38,
Organism=Saccharomyces cerevisiae, GI6226540, Length=247, Percent_Identity=39.6761133603239, Blast_Score=163, Evalue=3e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001505
- InterPro:   IPR008972
- InterPro:   IPR014222
- InterPro:   IPR015964
- InterPro:   IPR002429
- InterPro:   IPR011759 [H]

Pfam domain/function: PF00116 COX2; PF02790 COX2_TM [H]

EC number: =1.9.3.1 [H]

Molecular weight: Translated: 32491; Mature: 32491

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS00078 COX2 ; PS50999 COX2_TM ; PS50857 COX2_CUA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKAYAALTTLVCLLFASGTYADQPLPWQATLQPAATPIMREIHWFEQYTLWFIVPITLF
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLVLLIVVCVKFRASANPVPSKTSHNTLIEIAWTVGPVLVLLLLAIPSFNLLTAQLTLPE
HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCEEEEEEECCC
NPDVTIKATATQWQWNYEYEGSGDSPLAFDSYLLKDQDRAAAGKEDKSVYPRLLAVDNEL
CCCEEEEEEEEEEEEEEEECCCCCCCCCHHHHHHCCCCHHCCCCCCHHHCCEEEEECCCE
VLPVNKTVRVLVTSAPTDVIHAFAMPSFGVKIDAVPGRLNETWFRAEREGLFYGQCSELC
EEECCCEEEEEEECCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHCCCEEECHHHHC
GKDHAFMPIAIRVVSEDKYKQWLTTAASDLPGAYKTLMAATDGPAKTLDVAEAQ
CCCCCEEEEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKAYAALTTLVCLLFASGTYADQPLPWQATLQPAATPIMREIHWFEQYTLWFIVPITLF
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLVLLIVVCVKFRASANPVPSKTSHNTLIEIAWTVGPVLVLLLLAIPSFNLLTAQLTLPE
HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCEEEEEEECCC
NPDVTIKATATQWQWNYEYEGSGDSPLAFDSYLLKDQDRAAAGKEDKSVYPRLLAVDNEL
CCCEEEEEEEEEEEEEEEECCCCCCCCCHHHHHHCCCCHHCCCCCCHHHCCEEEEECCCE
VLPVNKTVRVLVTSAPTDVIHAFAMPSFGVKIDAVPGRLNETWFRAEREGLFYGQCSELC
EEECCCEEEEEEECCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHCCCEEECHHHHC
GKDHAFMPIAIRVVSEDKYKQWLTTAASDLPGAYKTLMAATDGPAKTLDVAEAQ
CCCCCEEEEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA