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The map label for this gene is ytfH [C]

Identifier: 209548165

GI number: 209548165

Start: 580859

End: 581308

Strand: Direct

Name: ytfH [C]

Synonym: Rleg2_0559

Alternate gene names: 209548165

Gene position: 580859-581308 (Clockwise)

Preceding gene: 209548162

Following gene: 209548168

Centisome position: 12.8

GC content: 62.22

Gene sequence:

>450_bases
ATGAAAAATGGTTCAATTCCGCAGTGCCCGGTCGCCCGGGGCCTTAAATCTGTGGGCGATGCGTGGAGCATTCTGGTCTT
GCGGGACGCGCATACCGGCCTTACCCGGTTCGACCAATTCAGGAAGAGTCTCGGCATCGTGCCGACCATGCTCACCAAGC
GCCTCAAAGCGCTAACCGACGATGGCCTGCTGGAAAAGCGCCTCTATTCCGAGCGGCCGCCGCGCGAGGAATATGTGCTG
ACGGAGGCGGGCCGGGATTTCCTGCCGGTGCTGATGATGATCGGAGCGTGGGCCCATCGCCACTGCGATGGCGAGCTCGC
CCGCTATGTCGATGTCGAAACGGGCTCGGAGATCGAGCCGATCGCAATCGATGCGGTGACAGGTGCCAAACTCGGAACCC
GGGCAATGCGGCTGAGTGCCGGTGAGGAACGGGACTGCGGCGACCAATAG

Upstream 100 bases:

>100_bases
GTTCTGTCGATCATGCTGTCAGCTCTCATTTGAAGTGGATCATTGGCTGACGCTGTGTTACTATCTTTTCGATATCATGT
CACTATCGAAAAGATACCAA

Downstream 100 bases:

>100_bases
CGGGGGCAGCCGACGGCGGCCCGCCTATTTCTCCAGCGTCGCCACCACCTCGACATGCGAGGTCCAGAGGAACTGGTCGA
TCGGCGTCACGCCGGTGATC

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MKNGSIPQCPVARGLKSVGDAWSILVLRDAHTGLTRFDQFRKSLGIVPTMLTKRLKALTDDGLLEKRLYSERPPREEYVL
TEAGRDFLPVLMMIGAWAHRHCDGELARYVDVETGSEIEPIAIDAVTGAKLGTRAMRLSAGEERDCGDQ

Sequences:

>Translated_149_residues
MKNGSIPQCPVARGLKSVGDAWSILVLRDAHTGLTRFDQFRKSLGIVPTMLTKRLKALTDDGLLEKRLYSERPPREEYVL
TEAGRDFLPVLMMIGAWAHRHCDGELARYVDVETGSEIEPIAIDAVTGAKLGTRAMRLSAGEERDCGDQ
>Mature_149_residues
MKNGSIPQCPVARGLKSVGDAWSILVLRDAHTGLTRFDQFRKSLGIVPTMLTKRLKALTDDGLLEKRLYSERPPREEYVL
TEAGRDFLPVLMMIGAWAHRHCDGELARYVDVETGSEIEPIAIDAVTGAKLGTRAMRLSAGEERDCGDQ

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 16497; Mature: 16497

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNGSIPQCPVARGLKSVGDAWSILVLRDAHTGLTRFDQFRKSLGIVPTMLTKRLKALTD
CCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCC
DGLLEKRLYSERPPREEYVLTEAGRDFLPVLMMIGAWAHRHCDGELARYVDVETGSEIEP
CHHHHHHHHHCCCCCHHEEHHHCCCHHHHHHHHHHHHHHHCCCCHHHHEEECCCCCCCCC
IAIDAVTGAKLGTRAMRLSAGEERDCGDQ
EEEECCCCCHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKNGSIPQCPVARGLKSVGDAWSILVLRDAHTGLTRFDQFRKSLGIVPTMLTKRLKALTD
CCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCC
DGLLEKRLYSERPPREEYVLTEAGRDFLPVLMMIGAWAHRHCDGELARYVDVETGSEIEP
CHHHHHHHHHCCCCCHHEEHHHCCCHHHHHHHHHHHHHHHCCCCHHHHEEECCCCCCCCC
IAIDAVTGAKLGTRAMRLSAGEERDCGDQ
EEEECCCCCHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]