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The map label for this gene is yjjM [H]

Identifier: 209548097

GI number: 209548097

Start: 504196

End: 505080

Strand: Reverse

Name: yjjM [H]

Synonym: Rleg2_0491

Alternate gene names: 209548097

Gene position: 505080-504196 (Counterclockwise)

Preceding gene: 209548101

Following gene: 209548090

Centisome position: 11.13

GC content: 55.14

Gene sequence:

>885_bases
ATGAGGACGGATACGACCTTTAAGCGGGCCTTTAATGATATGATCGATATCATTCGGGCATTCGATCTTGGAGAGGAATT
GCCATCGGAAAACGCACTGCGCGCCCAGCTTGGCGTGAGCAGAACGACGGTGCGGAAGGTGCTGGCGGCGATGTCCGCAC
GGGGGATCATCGTATGCGAAGCGCATAGGCGGATTATACGCGAGCAGCCGCGGCAGATAGAGCGCTATCCGAAGGAAGAG
ACCTTAGCCATTTCGGAACAGTTCGAGACGAGTTTCATGGAATGGATGCTGCGCGGCGATGCGTGTCCGGGCACGGAAAT
CAATGAGGCTGAATTGGCTCGGAAATTCGGCGTCGCGACAACCATAGTCCGTGAGTTCCTCAATCGATTTCAGAAATATG
GGCTGATCGAGAGGCGTCAGAATGCAGGCTGGGTTTTTAAAGGGTTCACCGCAAGTTTCGCACTCGAACTGTTCGAAATC
AGAGAAATGTTCGAAATGCGCTCCGCACGCCTGTTCGCTACCCTGCCCGACAGCTCACCCATCTGGAAGCAAGTGCGTGC
CGTACGAGCGGCGCATTTGGAACTGCTCGCGGATATCGATGCCCGGTTTCAGGATTTCTCGGAACTGGACAGCCGGTTCC
ATCGCCTGATTGTGGCTGTCGCGCCAAACCGTTTTATCGAAAGCTTCCAAGACGTGATCGCCATGGTCTTCCACTATCAC
TATCAGTGGAACAAGCGGGATGAACGCGCGCGCAATGAGGTCGCCATTGGGGAACATCTCGCGCTGATCGATGCCCTCGA
AAGCCGCAACATCGCGTTGATCGATCACGCTTGTCGGTCGCATCTGACCTCCGCCCGCGAAACTTTGCTTCACTCGATCG
TGTAA

Upstream 100 bases:

>100_bases
AATTTCCCGAGCCTCCCTGGTTTTTTATACATAAGAAACATATGATACACGTACGTCAAATTGTTTCTTATGGATATCTA
AACATGCCGGAAGTTGCGCA

Downstream 100 bases:

>100_bases
CCACATTGCGATTGGGGGTAGGAGAAAGCCCGACGAACCAGCGGAACAAGTGGTTTTTGATCGATAGCTTCCGAAAACCA
ACGCGAGTTTGCAGAAGTCT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MRTDTTFKRAFNDMIDIIRAFDLGEELPSENALRAQLGVSRTTVRKVLAAMSARGIIVCEAHRRIIREQPRQIERYPKEE
TLAISEQFETSFMEWMLRGDACPGTEINEAELARKFGVATTIVREFLNRFQKYGLIERRQNAGWVFKGFTASFALELFEI
REMFEMRSARLFATLPDSSPIWKQVRAVRAAHLELLADIDARFQDFSELDSRFHRLIVAVAPNRFIESFQDVIAMVFHYH
YQWNKRDERARNEVAIGEHLALIDALESRNIALIDHACRSHLTSARETLLHSIV

Sequences:

>Translated_294_residues
MRTDTTFKRAFNDMIDIIRAFDLGEELPSENALRAQLGVSRTTVRKVLAAMSARGIIVCEAHRRIIREQPRQIERYPKEE
TLAISEQFETSFMEWMLRGDACPGTEINEAELARKFGVATTIVREFLNRFQKYGLIERRQNAGWVFKGFTASFALELFEI
REMFEMRSARLFATLPDSSPIWKQVRAVRAAHLELLADIDARFQDFSELDSRFHRLIVAVAPNRFIESFQDVIAMVFHYH
YQWNKRDERARNEVAIGEHLALIDALESRNIALIDHACRSHLTSARETLLHSIV
>Mature_294_residues
MRTDTTFKRAFNDMIDIIRAFDLGEELPSENALRAQLGVSRTTVRKVLAAMSARGIIVCEAHRRIIREQPRQIERYPKEE
TLAISEQFETSFMEWMLRGDACPGTEINEAELARKFGVATTIVREFLNRFQKYGLIERRQNAGWVFKGFTASFALELFEI
REMFEMRSARLFATLPDSSPIWKQVRAVRAAHLELLADIDARFQDFSELDSRFHRLIVAVAPNRFIESFQDVIAMVFHYH
YQWNKRDERARNEVAIGEHLALIDALESRNIALIDHACRSHLTSARETLLHSIV

Specific function: May be a positive transcriptional regulator for yjjM and/or yjjN. Is essential for growth on L-galactonate as the sole carbon source [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48995005, Length=295, Percent_Identity=33.8983050847458, Blast_Score=181, Evalue=5e-47,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 34104; Mature: 34104

Theoretical pI: Translated: 7.31; Mature: 7.31

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTDTTFKRAFNDMIDIIRAFDLGEELPSENALRAQLGVSRTTVRKVLAAMSARGIIVCE
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHCCCCEEEEH
AHRRIIREQPRQIERYPKEETLAISEQFETSFMEWMLRGDACPGTEINEAELARKFGVAT
HHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
TIVREFLNRFQKYGLIERRQNAGWVFKGFTASFALELFEIREMFEMRSARLFATLPDSSP
HHHHHHHHHHHHCCCHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCH
IWKQVRAVRAAHLELLADIDARFQDFSELDSRFHRLIVAVAPNRFIESFQDVIAMVFHYH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
YQWNKRDERARNEVAIGEHLALIDALESRNIALIDHACRSHLTSARETLLHSIV
HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRTDTTFKRAFNDMIDIIRAFDLGEELPSENALRAQLGVSRTTVRKVLAAMSARGIIVCE
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHCCCCEEEEH
AHRRIIREQPRQIERYPKEETLAISEQFETSFMEWMLRGDACPGTEINEAELARKFGVAT
HHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
TIVREFLNRFQKYGLIERRQNAGWVFKGFTASFALELFEIREMFEMRSARLFATLPDSSP
HHHHHHHHHHHHCCCHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCH
IWKQVRAVRAAHLELLADIDARFQDFSELDSRFHRLIVAVAPNRFIESFQDVIAMVFHYH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
YQWNKRDERARNEVAIGEHLALIDALESRNIALIDHACRSHLTSARETLLHSIV
HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]