Click here to switch to the map view.

The map label for this gene is rpoE [H]

Identifier: 209548008

GI number: 209548008

Start: 413118

End: 413723

Strand: Direct

Name: rpoE [H]

Synonym: Rleg2_0400

Alternate gene names: 209548008

Gene position: 413118-413723 (Clockwise)

Preceding gene: 209548007

Following gene: 209548009

Centisome position: 9.1

GC content: 62.21

Gene sequence:

>606_bases
ATGTCTGTCGCGCCTACCTCATTTCCTGCCTATAGTCGCGCGAGAATGGAATCGCCGGTTCGTCCGGCGGTTTCGAAAAA
TGCAGGATCGGCGGAGGCGGCCATCGCCAGCGAAGCGGATATCAGGAGCGGCCTGACGGAAAATCTGGCAAGGCTCTGGC
GTTATGGTCTTGTTCTCTCGCATCAGCGCGATGTCGCCGACGATCTGGTGCAGGCGACCTGCGTTCGCGCGCTGGAACGC
GCCGATCAGTTCATTCCCGGCACCCGGCTCGACCGCTGGCTGTTTTCGATCCTCCATTCGATCTGGCTGAACGAGATACG
TTCCCGCCGGGTGCGCCAAGGCCAGGGTTTCGTCGATGCCCGGGAGACGCTGACCTTCGACGGCGCGCATGCCACCGAAA
CGCAGGTGATGGCCGGTCAGGTGCTGAAACGGGTCAATGCGCTGCCCGAAGCACAGAGAACGGTGGTGTTCCTCGCCTAT
GTCGAAGGGCTTTCCTATCGCGAGGTGGCAAGCATATTGGATATTCCGATCGGAACCGTGATGAGCCGGCTGGCGGCTGC
CCGCGCCAGGCTCTCCGGCGATGGCCTGGAAGGGGGACGGCAATGA

Upstream 100 bases:

>100_bases
TTGTGAGGAATATCAGGATCTGAGCGCCGCCATCATCGACCCGTCGAAGATCTGATTGGCAGGCACCGGCGGGAAACGAA
ACAGAGAAAGGCATGGGAGA

Downstream 100 bases:

>100_bases
ACACGAAGCAAATCATTCCCTCCGACGAGGATCTGACCGCCTTCATCGATGGCGAACTGACGGCCGAAGAGGCCGCGCGC
ATCGAAAGTCTGGTGAACGA

Product: ECF subfamily RNA polymerase sigma-24 subunit

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MSVAPTSFPAYSRARMESPVRPAVSKNAGSAEAAIASEADIRSGLTENLARLWRYGLVLSHQRDVADDLVQATCVRALER
ADQFIPGTRLDRWLFSILHSIWLNEIRSRRVRQGQGFVDARETLTFDGAHATETQVMAGQVLKRVNALPEAQRTVVFLAY
VEGLSYREVASILDIPIGTVMSRLAAARARLSGDGLEGGRQ

Sequences:

>Translated_201_residues
MSVAPTSFPAYSRARMESPVRPAVSKNAGSAEAAIASEADIRSGLTENLARLWRYGLVLSHQRDVADDLVQATCVRALER
ADQFIPGTRLDRWLFSILHSIWLNEIRSRRVRQGQGFVDARETLTFDGAHATETQVMAGQVLKRVNALPEAQRTVVFLAY
VEGLSYREVASILDIPIGTVMSRLAAARARLSGDGLEGGRQ
>Mature_200_residues
SVAPTSFPAYSRARMESPVRPAVSKNAGSAEAAIASEADIRSGLTENLARLWRYGLVLSHQRDVADDLVQATCVRALERA
DQFIPGTRLDRWLFSILHSIWLNEIRSRRVRQGQGFVDARETLTFDGAHATETQVMAGQVLKRVNALPEAQRTVVFLAYV
EGLSYREVASILDIPIGTVMSRLAAARARLSGDGLEGGRQ

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22079; Mature: 21948

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: PS00622 HTH_LUXR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVAPTSFPAYSRARMESPVRPAVSKNAGSAEAAIASEADIRSGLTENLARLWRYGLVLS
CCCCCCCCCHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HQRDVADDLVQATCVRALERADQFIPGTRLDRWLFSILHSIWLNEIRSRRVRQGQGFVDA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
RETLTFDGAHATETQVMAGQVLKRVNALPEAQRTVVFLAYVEGLSYREVASILDIPIGTV
HHHEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHH
MSRLAAARARLSGDGLEGGRQ
HHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SVAPTSFPAYSRARMESPVRPAVSKNAGSAEAAIASEADIRSGLTENLARLWRYGLVLS
CCCCCCCCHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HQRDVADDLVQATCVRALERADQFIPGTRLDRWLFSILHSIWLNEIRSRRVRQGQGFVDA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
RETLTFDGAHATETQVMAGQVLKRVNALPEAQRTVVFLAYVEGLSYREVASILDIPIGTV
HHHEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHH
MSRLAAARARLSGDGLEGGRQ
HHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]