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The map label for this gene is fliN [H]

Identifier: 209547919

GI number: 209547919

Start: 316989

End: 317576

Strand: Reverse

Name: fliN [H]

Synonym: Rleg2_0311

Alternate gene names: 209547919

Gene position: 317576-316989 (Counterclockwise)

Preceding gene: 209547920

Following gene: 209547918

Centisome position: 7.0

GC content: 59.52

Gene sequence:

>588_bases
ATGGCTACGAAGAAAACACAGCAGAACAGAGACCTCTCCCTGGATATGCCGGGCAGCGAAGCAGATCTCGATCAGGCGAT
CGACGATCTGCGCGGCGTGCTGAAGCAGGATGCCGATGGCGACCTGCCGCAGTTTGGCGACGACCTGCAGAACGACGCCT
TCGCAGCAGGAACCGATCTGGCGGCTTTCGGCGGCGAGATTTCGGACAGCCCGTTCGGCGGCGACGATTTCGGCGGCGAT
TTCGGTGCCGGCAATGCCGGCGCGGCTGCCGGCATGGATTTCGGCAGCACCCCTGCCTTCGATGCGTCGCCGGCTCCGCT
CGGCAGCGCCTTGAATTCCAATTTCGAACTGATCATGGACATTCCGATCGATGTCCAGATCATGCTCGGCACCAGCCGCA
TGCAGGTTTCCGGCCTGATGAACCTCAATGAAGGGGCGACGATCGCCCTCGACAAGAAAATCGGCGAGCCGGTCGAGATC
ATGGTGAACGGCCGCAGGATTGCCCGCGGCGAAATTACGGTGCTTGATAACGACGACACCCGATTCGGTGTGAAACTGAT
AGAAGTTTTGAGTACGAAAAAAGCCTGA

Upstream 100 bases:

>100_bases
CGGATGACGAACTCATCCGTCATTTAATGAATTAATCGGTTCTCTGGCTTTCGGGCTGCAAAGGCAGTTTGAGGCAAGTT
TCAACTGGAATAGTGATTTC

Downstream 100 bases:

>100_bases
TCCCTGTGTGGGACGGAGAGGTTAGACCATGATGGACTTTGACGATTTCGGCGGCGCGCTAGCCGGGAAACCGTTGACCC
AGGCTGAAAAGGCGGCGGCT

Product: flagellar motor switch protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MATKKTQQNRDLSLDMPGSEADLDQAIDDLRGVLKQDADGDLPQFGDDLQNDAFAAGTDLAAFGGEISDSPFGGDDFGGD
FGAGNAGAAAGMDFGSTPAFDASPAPLGSALNSNFELIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEI
MVNGRRIARGEITVLDNDDTRFGVKLIEVLSTKKA

Sequences:

>Translated_195_residues
MATKKTQQNRDLSLDMPGSEADLDQAIDDLRGVLKQDADGDLPQFGDDLQNDAFAAGTDLAAFGGEISDSPFGGDDFGGD
FGAGNAGAAAGMDFGSTPAFDASPAPLGSALNSNFELIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEI
MVNGRRIARGEITVLDNDDTRFGVKLIEVLSTKKA
>Mature_194_residues
ATKKTQQNRDLSLDMPGSEADLDQAIDDLRGVLKQDADGDLPQFGDDLQNDAFAAGTDLAAFGGEISDSPFGGDDFGGDF
GAGNAGAAAGMDFGSTPAFDASPAPLGSALNSNFELIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIM
VNGRRIARGEITVLDNDDTRFGVKLIEVLSTKKA

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=78, Percent_Identity=37.1794871794872, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 20386; Mature: 20255

Theoretical pI: Translated: 3.89; Mature: 3.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATKKTQQNRDLSLDMPGSEADLDQAIDDLRGVLKQDADGDLPQFGDDLQNDAFAAGTDL
CCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCH
AAFGGEISDSPFGGDDFGGDFGAGNAGAAAGMDFGSTPAFDASPAPLGSALNSNFELIMD
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEE
IPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDNDDT
CCCEEEEEECCCEEEEEEEEECCCCCEEEEECCCCCCEEEEECCEEEECCEEEEEECCCC
RFGVKLIEVLSTKKA
HHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATKKTQQNRDLSLDMPGSEADLDQAIDDLRGVLKQDADGDLPQFGDDLQNDAFAAGTDL
CCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCH
AAFGGEISDSPFGGDDFGGDFGAGNAGAAAGMDFGSTPAFDASPAPLGSALNSNFELIMD
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEE
IPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDNDDT
CCCEEEEEECCCEEEEEEEEECCCCCEEEEECCCCCCEEEEECCEEEECCEEEEEECCCC
RFGVKLIEVLSTKKA
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9161425; 11743193; 11743194 [H]