| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
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The map label for this gene is secD [H]
Identifier: 209547898
GI number: 209547898
Start: 294745
End: 297294
Strand: Reverse
Name: secD [H]
Synonym: Rleg2_0290
Alternate gene names: 209547898
Gene position: 297294-294745 (Counterclockwise)
Preceding gene: 209547899
Following gene: 209547897
Centisome position: 6.55
GC content: 63.25
Gene sequence:
>2550_bases ATGCGTACTTCACCATGGCTGGTGTTCACCTATACGGTGATCATCCTTCTCGGCCTATTGATCGCTTTACCGAACGTCCT GCCGCAATCCGTCCTTCAGCGCGTACCGGCATGGCTGCCGCATGAACAGGTGTCGCTCGGCCTCGACCTTCGCGGCGGCT CGCATCTCGTTCTGGAAGTCGACGAGGCGGATCTGACCAAGGAGCGGCTGCAATCACTGCTTCAGGACGCGCGCCGCGTG CTGCGCGAAAAGGGCATCCAGCCGAAGGCCGTCGTGCGCAGCCAGAACCAGATCGTCGTGACGCTCGCCGATGCCACGCA GAGCGATGCTGCCGTCACCGACCTCAAGACGCTCGCCAACCCGATCAGCACAGGCCTCAGCGCCGGCCAGTCGGATCTTG ATGTCCTGGCGAACGGAGCGACCATCACCATCGGCTTCTCCAAGGCTGGCATCTCCGCCAATGTCGACAACGCCGTCCAG CAGAGCCTTGAAGTCATCCGCCAGCGCGTCGACCAGGTCGGCGTTTCCGAGCCGACCATTCAGCGCATCGGCGCCAATCG CGTGCTCGTGCAGCTGCCCGGCGCCCAGGATCCGACGCGGCTGCGCCAGCTTCTCGGCTCCACGGCGAAGATGTCGTTCC ATATGCTGTCGCCGAACAACCAGCCCGGCCCCGGCGTGACCATGCTGAAGGACGATGAAGGCCGGACCTACCCGGTGCTT GATCGCGTCGAACTCTCCGGCGACCGGCTTTCCGACGCCCGCGTCAGCTTCGACCCGAACACGCATGAGCCGATCGTCAG CTTCCGCTTCGACAGCGCCGGCGCCAGCCGCTTTGCCGATATCACCCGTCAGAATGTCGGCAATCCCTTCGCCATCGTCC TCGACGACAAGGTGCTGAGCGCACCTGTCATCCGCGAGCCGATCACCGGCGGTTCCGGCCAGATCTCCGGCAACTTCTCT GCCGACAGCGCCACGACGCTTGCCGCCATGCTGCGTGCCGGCGCCCTGCCCGCCAAGCTGACGGTCATCGAGGAGCGCAC CGTCGGCGCCGACCTCGGTGCCGATGCCATCAAGATGGGCATCTATTCCGGCATTGTCGGCTTTATCCTCGTCGCAGTCT TCATTTTCGTACTCTATGGCACCTGGGGCGTGCTGGCGAATATCGCGCTCTTGATCCACACGATCCTGACCTTCTCGGCC CTGACGCTGGTCGGTGCGACGCTGACGCTGCCGGGCATTGCCGGTGTCGTTCTCGGCATCGGCCTTGCGGTCGATGCGAA CGTCCTCATCAACGAGCGTATTCGTGAAGAGACCCGCAAGGGCAAGGGCGCCTTTGCCGCCATCGATACCGGCTTCAATC GCGCCTATTCGACCATCATCGACGGCAATATGACCGCCCTGATCGCTGCGGCCATCCTGTTCTTTTTCGGTTCCGGCCCG GTTCGCGGCTTTGCCGTGACCATGGCGCTCGGCCTGATCATTTCGATGTTCACCTCGGTCGCCTTCGTTCGCGTTGCGAT GATCGAGATCACCCGCCGCCGCAAGTTCAAGGTGCTGAACATCCGGCCGCTGATCCCGTTCAGCCCCTATGACAAGCACA TCGAGTTCATGAAGGCGCGCTTCTTCGGCGTCACCGTTTCGGCGCTGCTTTCGATCGCCTCCGTCGTGCTCTTCATTCAC CCCGGTCTCAACTACGGCGTCGATTTCCGCGGCGGCATCCAGATGTCCGTCAAGACCCAAGGGGTGGCCGATCTGGCGAA GTTCCGCGAAGGTCTTGATAGTCTCGGCCTCGGCGAAATCACGCTGCAGTCCTTCGGCGACAAAAGCAGCATTCTCGTTC GCGCCCAGCGACAGGAGGGCGGCGAAGAGGCGCAGACGGCAGCGGTGACCAAGCTGAAGGCCGAAGTCGCCAAGATCGAT CCGACCGCCACCGTCGAAGGCACGGATGTCATCGGCCCGAAGGTCAGCGGCGAGCTTGCCTGGGCCGGCATCCTGTCGGT GGTGATCGCCAGCCTGGCGATGCTCATCTATATCTGGGTGCGGTTCGAATGGCCGTTTGCCGTCGGCGCTATCGTCACGC TGGTCCTCGACGTCACCAAGGCGATCGGCTTCTTTGCGATCACCGGCCTCGACTTCAACCTGACGGCCATCGCCGCCATC CTGACGCTCGTCGGTTACTCGGTCAACGACAAGGTCGTCGTCTATGACCGCATGCGCGAAAACATGCGGCTCTACAAGTC GATGCCGCTGCGCGAGATCATCGACAAGTCAATCAACGAGACCCTGGCACGAAGCCTCTACACCAATGCGACGGCCTTCC TCGCCCTGGTGCCGATGGCAATCTGGGGCGGCAGCGCCGTCTCGAGCTTTGCGATCCCGATGGTCTTCGGCATTCTCGTG GCCGGCGCCTCGTCGATCTTCATCGCGGCACCGATCCTGCTCTTCCTCGGCGACTGGCGCCGCCGCCATGCCAAGGTGGC AGCGGCAACCGATGGCGCCGTCGAAATCATCCCGCCGGAACAGGGTCGCCCGCGCAAGTCGGCGAGCTAA
Upstream 100 bases:
>100_bases CGCCGGCTGCAGCCTGACGTTTGCGCCGAGGCGCTTCCGACATCTGACGACATGCCGCCAGCGCCCGAGCGCCGGCCCTC GATTATCTAAGGAATACAAC
Downstream 100 bases:
>100_bases AATCCGCCTGATGACGCATCCTTGAAGAGGGCGCCGGTTGCAGAGCCGGCGCCCTCTTTCTATTGTCGATGACTGCAAGG ATAAAATCCTGCAGCGATTC
Product: bifunctional preprotein translocase subunit SecD/SecF
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 849; Mature: 849
Protein sequence:
>849_residues MRTSPWLVFTYTVIILLGLLIALPNVLPQSVLQRVPAWLPHEQVSLGLDLRGGSHLVLEVDEADLTKERLQSLLQDARRV LREKGIQPKAVVRSQNQIVVTLADATQSDAAVTDLKTLANPISTGLSAGQSDLDVLANGATITIGFSKAGISANVDNAVQ QSLEVIRQRVDQVGVSEPTIQRIGANRVLVQLPGAQDPTRLRQLLGSTAKMSFHMLSPNNQPGPGVTMLKDDEGRTYPVL DRVELSGDRLSDARVSFDPNTHEPIVSFRFDSAGASRFADITRQNVGNPFAIVLDDKVLSAPVIREPITGGSGQISGNFS ADSATTLAAMLRAGALPAKLTVIEERTVGADLGADAIKMGIYSGIVGFILVAVFIFVLYGTWGVLANIALLIHTILTFSA LTLVGATLTLPGIAGVVLGIGLAVDANVLINERIREETRKGKGAFAAIDTGFNRAYSTIIDGNMTALIAAAILFFFGSGP VRGFAVTMALGLIISMFTSVAFVRVAMIEITRRRKFKVLNIRPLIPFSPYDKHIEFMKARFFGVTVSALLSIASVVLFIH PGLNYGVDFRGGIQMSVKTQGVADLAKFREGLDSLGLGEITLQSFGDKSSILVRAQRQEGGEEAQTAAVTKLKAEVAKID PTATVEGTDVIGPKVSGELAWAGILSVVIASLAMLIYIWVRFEWPFAVGAIVTLVLDVTKAIGFFAITGLDFNLTAIAAI LTLVGYSVNDKVVVYDRMRENMRLYKSMPLREIIDKSINETLARSLYTNATAFLALVPMAIWGGSAVSSFAIPMVFGILV AGASSIFIAAPILLFLGDWRRRHAKVAAATDGAVEIIPPEQGRPRKSAS
Sequences:
>Translated_849_residues MRTSPWLVFTYTVIILLGLLIALPNVLPQSVLQRVPAWLPHEQVSLGLDLRGGSHLVLEVDEADLTKERLQSLLQDARRV LREKGIQPKAVVRSQNQIVVTLADATQSDAAVTDLKTLANPISTGLSAGQSDLDVLANGATITIGFSKAGISANVDNAVQ QSLEVIRQRVDQVGVSEPTIQRIGANRVLVQLPGAQDPTRLRQLLGSTAKMSFHMLSPNNQPGPGVTMLKDDEGRTYPVL DRVELSGDRLSDARVSFDPNTHEPIVSFRFDSAGASRFADITRQNVGNPFAIVLDDKVLSAPVIREPITGGSGQISGNFS ADSATTLAAMLRAGALPAKLTVIEERTVGADLGADAIKMGIYSGIVGFILVAVFIFVLYGTWGVLANIALLIHTILTFSA LTLVGATLTLPGIAGVVLGIGLAVDANVLINERIREETRKGKGAFAAIDTGFNRAYSTIIDGNMTALIAAAILFFFGSGP VRGFAVTMALGLIISMFTSVAFVRVAMIEITRRRKFKVLNIRPLIPFSPYDKHIEFMKARFFGVTVSALLSIASVVLFIH PGLNYGVDFRGGIQMSVKTQGVADLAKFREGLDSLGLGEITLQSFGDKSSILVRAQRQEGGEEAQTAAVTKLKAEVAKID PTATVEGTDVIGPKVSGELAWAGILSVVIASLAMLIYIWVRFEWPFAVGAIVTLVLDVTKAIGFFAITGLDFNLTAIAAI LTLVGYSVNDKVVVYDRMRENMRLYKSMPLREIIDKSINETLARSLYTNATAFLALVPMAIWGGSAVSSFAIPMVFGILV AGASSIFIAAPILLFLGDWRRRHAKVAAATDGAVEIIPPEQGRPRKSAS >Mature_849_residues MRTSPWLVFTYTVIILLGLLIALPNVLPQSVLQRVPAWLPHEQVSLGLDLRGGSHLVLEVDEADLTKERLQSLLQDARRV LREKGIQPKAVVRSQNQIVVTLADATQSDAAVTDLKTLANPISTGLSAGQSDLDVLANGATITIGFSKAGISANVDNAVQ QSLEVIRQRVDQVGVSEPTIQRIGANRVLVQLPGAQDPTRLRQLLGSTAKMSFHMLSPNNQPGPGVTMLKDDEGRTYPVL DRVELSGDRLSDARVSFDPNTHEPIVSFRFDSAGASRFADITRQNVGNPFAIVLDDKVLSAPVIREPITGGSGQISGNFS ADSATTLAAMLRAGALPAKLTVIEERTVGADLGADAIKMGIYSGIVGFILVAVFIFVLYGTWGVLANIALLIHTILTFSA LTLVGATLTLPGIAGVVLGIGLAVDANVLINERIREETRKGKGAFAAIDTGFNRAYSTIIDGNMTALIAAAILFFFGSGP VRGFAVTMALGLIISMFTSVAFVRVAMIEITRRRKFKVLNIRPLIPFSPYDKHIEFMKARFFGVTVSALLSIASVVLFIH PGLNYGVDFRGGIQMSVKTQGVADLAKFREGLDSLGLGEITLQSFGDKSSILVRAQRQEGGEEAQTAAVTKLKAEVAKID PTATVEGTDVIGPKVSGELAWAGILSVVIASLAMLIYIWVRFEWPFAVGAIVTLVLDVTKAIGFFAITGLDFNLTAIAAI LTLVGYSVNDKVVVYDRMRENMRLYKSMPLREIIDKSINETLARSLYTNATAFLALVPMAIWGGSAVSSFAIPMVFGILV AGASSIFIAAPILLFLGDWRRRHAKVAAATDGAVEIIPPEQGRPRKSAS
Specific function: Involved in protein export [H]
COG id: COG0342
COG function: function code U; Preprotein translocase subunit SecD
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secD/secF family. SecD subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786609, Length=524, Percent_Identity=36.0687022900763, Blast_Score=292, Evalue=6e-80, Organism=Escherichia coli, GI1786610, Length=302, Percent_Identity=31.7880794701987, Blast_Score=178, Evalue=1e-45,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005791 - InterPro: IPR022813 - InterPro: IPR022646 - InterPro: IPR022645 - InterPro: IPR005665 [H]
Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]
EC number: NA
Molecular weight: Translated: 90898; Mature: 90898
Theoretical pI: Translated: 9.53; Mature: 9.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTSPWLVFTYTVIILLGLLIALPNVLPQSVLQRVPAWLPHEQVSLGLDLRGGSHLVLEV CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEEEEECCCCEEEEEE DEADLTKERLQSLLQDARRVLREKGIQPKAVVRSQNQIVVTLADATQSDAAVTDLKTLAN CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHH PISTGLSAGQSDLDVLANGATITIGFSKAGISANVDNAVQQSLEVIRQRVDQVGVSEPTI HHHHHHCCCCCCHHHEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH QRIGANRVLVQLPGAQDPTRLRQLLGSTAKMSFHMLSPNNQPGPGVTMLKDDEGRTYPVL HHCCCCEEEEECCCCCCHHHHHHHHCCHHHEEEEEECCCCCCCCCEEEEECCCCCCCCCE DRVELSGDRLSDARVSFDPNTHEPIVSFRFDSAGASRFADITRQNVGNPFAIVLDDKVLS EEEECCCCCCCCCEEECCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCHHC APVIREPITGGSGQISGNFSADSATTLAAMLRAGALPAKLTVIEERTVGADLGADAIKMG CCHHHCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHH IYSGIVGFILVAVFIFVLYGTWGVLANIALLIHTILTFSALTLVGATLTLPGIAGVVLGI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH GLAVDANVLINERIREETRKGKGAFAAIDTGFNRAYSTIIDGNMTALIAAAILFFFGSGP HHHCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHCCCC VRGFAVTMALGLIISMFTSVAFVRVAMIEITRRRKFKVLNIRPLIPFSPYDKHIEFMKAR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHH FFGVTVSALLSIASVVLFIHPGLNYGVDFRGGIQMSVKTQGVADLAKFREGLDSLGLGEI HHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEEEECCCHHHHHHHHHCHHHCCCCHH TLQSFGDKSSILVRAQRQEGGEEAQTAAVTKLKAEVAKIDPTATVEGTDVIGPKVSGELA HHHHCCCCCCEEEEEHHHCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCHH WAGILSVVIASLAMLIYIWVRFEWPFAVGAIVTLVLDVTKAIGFFAITGLDFNLTAIAAI HHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHH LTLVGYSVNDKVVVYDRMRENMRLYKSMPLREIIDKSINETLARSLYTNATAFLALVPMA HHHHCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IWGGSAVSSFAIPMVFGILVAGASSIFIAAPILLFLGDWRRRHAKVAAATDGAVEIIPPE HCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEECCC QGRPRKSAS CCCCCCCCC >Mature Secondary Structure MRTSPWLVFTYTVIILLGLLIALPNVLPQSVLQRVPAWLPHEQVSLGLDLRGGSHLVLEV CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEEEEECCCCEEEEEE DEADLTKERLQSLLQDARRVLREKGIQPKAVVRSQNQIVVTLADATQSDAAVTDLKTLAN CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHH PISTGLSAGQSDLDVLANGATITIGFSKAGISANVDNAVQQSLEVIRQRVDQVGVSEPTI HHHHHHCCCCCCHHHEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH QRIGANRVLVQLPGAQDPTRLRQLLGSTAKMSFHMLSPNNQPGPGVTMLKDDEGRTYPVL HHCCCCEEEEECCCCCCHHHHHHHHCCHHHEEEEEECCCCCCCCCEEEEECCCCCCCCCE DRVELSGDRLSDARVSFDPNTHEPIVSFRFDSAGASRFADITRQNVGNPFAIVLDDKVLS EEEECCCCCCCCCEEECCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCHHC APVIREPITGGSGQISGNFSADSATTLAAMLRAGALPAKLTVIEERTVGADLGADAIKMG CCHHHCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHH IYSGIVGFILVAVFIFVLYGTWGVLANIALLIHTILTFSALTLVGATLTLPGIAGVVLGI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH GLAVDANVLINERIREETRKGKGAFAAIDTGFNRAYSTIIDGNMTALIAAAILFFFGSGP HHHCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHCCCC VRGFAVTMALGLIISMFTSVAFVRVAMIEITRRRKFKVLNIRPLIPFSPYDKHIEFMKAR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHH FFGVTVSALLSIASVVLFIHPGLNYGVDFRGGIQMSVKTQGVADLAKFREGLDSLGLGEI HHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEEEECCCHHHHHHHHHCHHHCCCCHH TLQSFGDKSSILVRAQRQEGGEEAQTAAVTKLKAEVAKIDPTATVEGTDVIGPKVSGELA HHHHCCCCCCEEEEEHHHCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCHH WAGILSVVIASLAMLIYIWVRFEWPFAVGAIVTLVLDVTKAIGFFAITGLDFNLTAIAAI HHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHH LTLVGYSVNDKVVVYDRMRENMRLYKSMPLREIIDKSINETLARSLYTNATAFLALVPMA HHHHCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IWGGSAVSSFAIPMVFGILVAGASSIFIAAPILLFLGDWRRRHAKVAAATDGAVEIIPPE HCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEECCC QGRPRKSAS CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9826342 [H]