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The map label for this gene is bphB [H]

Identifier: 209547893

GI number: 209547893

Start: 289482

End: 291623

Strand: Reverse

Name: bphB [H]

Synonym: Rleg2_0285

Alternate gene names: 209547893

Gene position: 291623-289482 (Counterclockwise)

Preceding gene: 209547897

Following gene: 209547892

Centisome position: 6.43

GC content: 61.25

Gene sequence:

>2142_bases
GTGCAGGATAGTGGCAATGTGGACCTGCAGGACCAGCGGCAGCGGCAGCGCTACCGTGGCTTTGCGATTGCGGTCGGCTG
CCTGATGTTCCTTCTCGGAATGAGCGCCCTTGCCGGCTGGCTATTGCAGATCCAGGTGATCATTTCGCTGGTTCCCGGCT
TTCCGTCGATGGCCTTCAACACCGCGCTCTGCTTCGTGCTGTCCGGCCTGGGGCTTGCCGCCTCGACGCTGGCAGCCCGT
CGTTTTCTGGTTGCCGCAACGGTCATGACAGGGATTGCGGCGGCGATCGCCGCGGCCCGGCTCCTGGAAATCGTAACCAT
CGGCCGGACGTTCCACAATATCGACCTGCTGATCACCCGCTTCGTCATTCCGCCCGATTTCATCGCGCAGATCGGCGGCG
GCATGGGCCCGAACACGGCGCTGGTCTTCCTGATCGCCAATCTTTCGCTGCTGTTCTCTCTCTACGTCGAGAGGAGAAGC
CAGGTGGTGCAGGAGCTGACGAGCTACATCGTCATCACCCTCGGCATGATCGCGCTCGCCAGCTATGTCACCGATGCCGA
ACAGGGTTACCGCTGGGGGCCCTATGCGGCGATGGCGCTGCATACGGCGGTCGGCATGGTGATCTTCGGCTCAGGCCTGC
TCGCGCGCTCCTGGTGGATGCAGCCGGCAAACCGGGCACAGATTCCGCTCTGGATCCCGGCGGCGGTCTGCTTCACCGGC
CTCCTCGTCGATCTCTATACGCCGCTCGGCGTTGCCAACGGCATTCTCTATGTGCCGCTGGTGCTGACGGCGCTGTGGTT
CGGCAACAGGAATGCGCCGCTTTTCTTCGCGTTTGCCTGCACCGTGCTGTTGATGCTCGGCTTCTTCGCCGTCAGGCACA
ACGAGGCGGCATTCTGGCAGGAGATCGCCAACCGCACGATTACGGCTGCGACGCTCTGGCTGATCGCCATCCTCGTCTTT
TATTTCATGCGCAACAATCATAACCTCGAAACCGAGCGCGTCCGTTTCGGCGCGCTGGTGCGCGGCACGCCCGATGCCGT
CATCGTCATCGACGAGAGTGGAACGATCAGGAGCTTCAACCCGGCGGCTGAAAGCATGTTCGGTTATACCCCGCAGGAGA
CGATAGGCCGGAATATCAAGATGCTGATGCCCGAACCCTACCATTCCGAGCACGACGGCTATCTCGCCCATTACCGGAAG
ACCGGTGAGGAGCGCATCATCGGCACGACGCGCATGGTCTCCGGGCGCCGCAGGAACGGCATCGTCTTTCCGATCGACGT
TTCCATCAGCGCCGTTTCCACCGGCGATGCGAAGATCTTCGTCGGCATCGTGCGGGATATCAGCGAGCGCGCCCGACAGG
AAGAGCGGATGAAAACGACGCTTGCCCAGCTCGAGGCCTATACGGCCGAACTCGAGCGCAGCAATCACGACCTCGACGAA
TTCGCCTATATCGCCTCGCATGATCTCAAGGAACCGCTGCGCGGCCTGCACAACCACTCCCGATTCCTGCTGGAGGACTA
CGAAGACAAGCTCGACGACGACGGCGTGCGCCGGCTGAACCGGCTGGTGCGCCTCAGCCAGCGCATGGAAAAACTCGTCA
ACGACCTGCTGTATTTCTCCCGGCTCGGTCGGCAGCAGCTGGCGGTCAAACGCAGCGACATCGGCCTGATCGTCAAGGAT
GTCGTCGCGACCATGGAACTGCTGCTCGAGGAACGCCATGCCAAGGTCATCATCGACGGCCAGTTGCCGGATGTGGTCTG
CGACGCTCCGCGGCTGACCGAGGTATTCCGCAATCTCATCACCAATGCGATCAAATACAACGACAAACCGGCGCCGCTGG
TGTCGATCGGCTATCTCGATCGGTTCGTCGGCCAGGACGGCACGATTGCCCGCAACGTGTTTTTCGTCCGGGATAACGGC
AAGGGCATACCCCAGGAATTCCATGAGGACATTTTCCGCATTTTCAAACGGCTGGAAAAATCGCAGGATTCCGACGACGG
CACCGGAGCAGGCCTCACCTTCGTCCGCAAGATCATCGCCCGGCACAATGGCGATATCTGGCTGGAATCCGAGGTCGGCA
CCGGCACCACATTCTACTTCACTCTGGGAAAAAAGCGCGAGGGGCAGAATGCAGCAGCGTGA

Upstream 100 bases:

>100_bases
AAAATCATTTCGGAAAAAGCGCAGCGTCGTTCTCCCCTGCCTATTGAGTATTCCTCGATTTCGGAAAAAATGGCCGCGCG
AACCGAGGAGGACATGACGG

Downstream 100 bases:

>100_bases
CACGCAACCGATCCTGATCGTCGAGGACAGCGAAGACGATTTCGAAGCGACGATGCGCGCCTTCAAACGCACCAACCTGC
GCAACTCGATCCGCTGGGCA

Product: multi-sensor signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 713; Mature: 713

Protein sequence:

>713_residues
MQDSGNVDLQDQRQRQRYRGFAIAVGCLMFLLGMSALAGWLLQIQVIISLVPGFPSMAFNTALCFVLSGLGLAASTLAAR
RFLVAATVMTGIAAAIAAARLLEIVTIGRTFHNIDLLITRFVIPPDFIAQIGGGMGPNTALVFLIANLSLLFSLYVERRS
QVVQELTSYIVITLGMIALASYVTDAEQGYRWGPYAAMALHTAVGMVIFGSGLLARSWWMQPANRAQIPLWIPAAVCFTG
LLVDLYTPLGVANGILYVPLVLTALWFGNRNAPLFFAFACTVLLMLGFFAVRHNEAAFWQEIANRTITAATLWLIAILVF
YFMRNNHNLETERVRFGALVRGTPDAVIVIDESGTIRSFNPAAESMFGYTPQETIGRNIKMLMPEPYHSEHDGYLAHYRK
TGEERIIGTTRMVSGRRRNGIVFPIDVSISAVSTGDAKIFVGIVRDISERARQEERMKTTLAQLEAYTAELERSNHDLDE
FAYIASHDLKEPLRGLHNHSRFLLEDYEDKLDDDGVRRLNRLVRLSQRMEKLVNDLLYFSRLGRQQLAVKRSDIGLIVKD
VVATMELLLEERHAKVIIDGQLPDVVCDAPRLTEVFRNLITNAIKYNDKPAPLVSIGYLDRFVGQDGTIARNVFFVRDNG
KGIPQEFHEDIFRIFKRLEKSQDSDDGTGAGLTFVRKIIARHNGDIWLESEVGTGTTFYFTLGKKREGQNAAA

Sequences:

>Translated_713_residues
MQDSGNVDLQDQRQRQRYRGFAIAVGCLMFLLGMSALAGWLLQIQVIISLVPGFPSMAFNTALCFVLSGLGLAASTLAAR
RFLVAATVMTGIAAAIAAARLLEIVTIGRTFHNIDLLITRFVIPPDFIAQIGGGMGPNTALVFLIANLSLLFSLYVERRS
QVVQELTSYIVITLGMIALASYVTDAEQGYRWGPYAAMALHTAVGMVIFGSGLLARSWWMQPANRAQIPLWIPAAVCFTG
LLVDLYTPLGVANGILYVPLVLTALWFGNRNAPLFFAFACTVLLMLGFFAVRHNEAAFWQEIANRTITAATLWLIAILVF
YFMRNNHNLETERVRFGALVRGTPDAVIVIDESGTIRSFNPAAESMFGYTPQETIGRNIKMLMPEPYHSEHDGYLAHYRK
TGEERIIGTTRMVSGRRRNGIVFPIDVSISAVSTGDAKIFVGIVRDISERARQEERMKTTLAQLEAYTAELERSNHDLDE
FAYIASHDLKEPLRGLHNHSRFLLEDYEDKLDDDGVRRLNRLVRLSQRMEKLVNDLLYFSRLGRQQLAVKRSDIGLIVKD
VVATMELLLEERHAKVIIDGQLPDVVCDAPRLTEVFRNLITNAIKYNDKPAPLVSIGYLDRFVGQDGTIARNVFFVRDNG
KGIPQEFHEDIFRIFKRLEKSQDSDDGTGAGLTFVRKIIARHNGDIWLESEVGTGTTFYFTLGKKREGQNAAA
>Mature_713_residues
MQDSGNVDLQDQRQRQRYRGFAIAVGCLMFLLGMSALAGWLLQIQVIISLVPGFPSMAFNTALCFVLSGLGLAASTLAAR
RFLVAATVMTGIAAAIAAARLLEIVTIGRTFHNIDLLITRFVIPPDFIAQIGGGMGPNTALVFLIANLSLLFSLYVERRS
QVVQELTSYIVITLGMIALASYVTDAEQGYRWGPYAAMALHTAVGMVIFGSGLLARSWWMQPANRAQIPLWIPAAVCFTG
LLVDLYTPLGVANGILYVPLVLTALWFGNRNAPLFFAFACTVLLMLGFFAVRHNEAAFWQEIANRTITAATLWLIAILVF
YFMRNNHNLETERVRFGALVRGTPDAVIVIDESGTIRSFNPAAESMFGYTPQETIGRNIKMLMPEPYHSEHDGYLAHYRK
TGEERIIGTTRMVSGRRRNGIVFPIDVSISAVSTGDAKIFVGIVRDISERARQEERMKTTLAQLEAYTAELERSNHDLDE
FAYIASHDLKEPLRGLHNHSRFLLEDYEDKLDDDGVRRLNRLVRLSQRMEKLVNDLLYFSRLGRQQLAVKRSDIGLIVKD
VVATMELLLEERHAKVIIDGQLPDVVCDAPRLTEVFRNLITNAIKYNDKPAPLVSIGYLDRFVGQDGTIARNVFFVRDNG
KGIPQEFHEDIFRIFKRLEKSQDSDDGTGAGLTFVRKIIARHNGDIWLESEVGTGTTFYFTLGKKREGQNAAA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG4251

COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI48994928, Length=270, Percent_Identity=27.7777777777778, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI1789149, Length=262, Percent_Identity=29.0076335877863, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI1788549, Length=375, Percent_Identity=23.7333333333333, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI87081921, Length=123, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI145693157, Length=270, Percent_Identity=26.6666666666667, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1790861, Length=232, Percent_Identity=25.4310344827586, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 79555; Mature: 79555

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDSGNVDLQDQRQRQRYRGFAIAVGCLMFLLGMSALAGWLLQIQVIISLVPGFPSMAFN
CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
TALCFVLSGLGLAASTLAARRFLVAATVMTGIAAAIAAARLLEIVTIGRTFHNIDLLITR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
FVIPPDFIAQIGGGMGPNTALVFLIANLSLLFSLYVERRSQVVQELTSYIVITLGMIALA
HCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SYVTDAEQGYRWGPYAAMALHTAVGMVIFGSGLLARSWWMQPANRAQIPLWIPAAVCFTG
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCEEEEHHHHHHHH
LLVDLYTPLGVANGILYVPLVLTALWFGNRNAPLFFAFACTVLLMLGFFAVRHNEAAFWQ
HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHH
EIANRTITAATLWLIAILVFYFMRNNHNLETERVRFGALVRGTPDAVIVIDESGTIRSFN
HHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCEEEECCCCEEEEECCCCCCCCCC
PAAESMFGYTPQETIGRNIKMLMPEPYHSEHDGYLAHYRKTGEERIIGTTRMVSGRRRNG
HHHHHHCCCCCHHHHCCCCEEECCCCCCCCCCCHHHHHHHCCCHHEEEHHHHHCCCCCCC
IVFPIDVSISAVSTGDAKIFVGIVRDISERARQEERMKTTLAQLEAYTAELERSNHDLDE
EEEEEECEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
FAYIASHDLKEPLRGLHNHSRFLLEDYEDKLDDDGVRRLNRLVRLSQRMEKLVNDLLYFS
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLGRQQLAVKRSDIGLIVKDVVATMELLLEERHAKVIIDGQLPDVVCDAPRLTEVFRNLI
HHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHCCCHHHHHHHHHHH
TNAIKYNDKPAPLVSIGYLDRFVGQDGTIARNVFFVRDNGKGIPQEFHEDIFRIFKRLEK
HHHHHCCCCCCCEEEHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
SQDSDDGTGAGLTFVRKIIARHNGDIWLESEVGTGTTFYFTLGKKREGQNAAA
CCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MQDSGNVDLQDQRQRQRYRGFAIAVGCLMFLLGMSALAGWLLQIQVIISLVPGFPSMAFN
CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
TALCFVLSGLGLAASTLAARRFLVAATVMTGIAAAIAAARLLEIVTIGRTFHNIDLLITR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
FVIPPDFIAQIGGGMGPNTALVFLIANLSLLFSLYVERRSQVVQELTSYIVITLGMIALA
HCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SYVTDAEQGYRWGPYAAMALHTAVGMVIFGSGLLARSWWMQPANRAQIPLWIPAAVCFTG
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCEEEEHHHHHHHH
LLVDLYTPLGVANGILYVPLVLTALWFGNRNAPLFFAFACTVLLMLGFFAVRHNEAAFWQ
HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHH
EIANRTITAATLWLIAILVFYFMRNNHNLETERVRFGALVRGTPDAVIVIDESGTIRSFN
HHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCEEEECCCCEEEEECCCCCCCCCC
PAAESMFGYTPQETIGRNIKMLMPEPYHSEHDGYLAHYRKTGEERIIGTTRMVSGRRRNG
HHHHHHCCCCCHHHHCCCCEEECCCCCCCCCCCHHHHHHHCCCHHEEEHHHHHCCCCCCC
IVFPIDVSISAVSTGDAKIFVGIVRDISERARQEERMKTTLAQLEAYTAELERSNHDLDE
EEEEEECEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
FAYIASHDLKEPLRGLHNHSRFLLEDYEDKLDDDGVRRLNRLVRLSQRMEKLVNDLLYFS
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLGRQQLAVKRSDIGLIVKDVVATMELLLEERHAKVIIDGQLPDVVCDAPRLTEVFRNLI
HHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHCCCHHHHHHHHHHH
TNAIKYNDKPAPLVSIGYLDRFVGQDGTIARNVFFVRDNGKGIPQEFHEDIFRIFKRLEK
HHHHHCCCCCCCEEEHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
SQDSDDGTGAGLTFVRKIIARHNGDIWLESEVGTGTTFYFTLGKKREGQNAAA
CCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]