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The map label for this gene is glxA [H]

Identifier: 209547727

GI number: 209547727

Start: 108739

End: 109794

Strand: Reverse

Name: glxA [H]

Synonym: Rleg2_0116

Alternate gene names: 209547727

Gene position: 109794-108739 (Counterclockwise)

Preceding gene: 209547734

Following gene: 209547725

Centisome position: 2.42

GC content: 62.97

Gene sequence:

>1056_bases
ATGAACGCAGACGCCAACCTTTCAGATGCACCTGCCATCGAGCCGGACTATGTCCGCTGGCTCGATGGTTTGTGGGCCGA
ACGGCTTTTGGCCGCCCGAGACCGCAAAGCCGATCTCTCCATCGGCATTCTGCTCTGGCCGAGCTTCCCGATGATGTCGC
TGACCGGGATCGTCGAGCCCTTGCGGCATGCGGCCGATTTCGCCGACAACTCCCGGCCTCTGCATTGCCGCTGGTCGATC
ATGGGAGCGCCGGGCCACGCCGCGGTGGCGAGCTGCGGCATCCGCGTGCAGGCAGATGCGCCCTATATCAACCCGACGGA
CTTCGACTATATCGCCGTCATCGGCGGCCTCCTGCCGCATCTGCGCGCGGCACCCAGCAAGCATCGCGACTACCTGCGGG
TCGCCGCATCCGCCGGAGTCGCGGTGATCGGTGTCTGCACCGGCGTCTTCGTACTCGCCCAAGAAGGTCTGCTGACCGGG
CGCAAAGCCTCCGTTCATCCCTTCCATGCCGAGGATTTCAAGATCGCCTTTCCGCGCCAGGCATTCTCGACGCGCGACGA
CTTCCTGATCGAGAACGGCCGCATCACCGTTCCCGGCGGCGTCTCGATCCTGTCGCTGATGACGGAACTCATCGGCACCC
ATTGCGGTCCCGACCGGGCGGCCAAGGCAGTTCACCAGCTGTCTCTGACCGAGCACAAGGGCCTGAGCGCTTTCGACCAA
GGCCGGGTTTCCAGCTTTCGACATGTCGAGGATTCCCGCATTCAGCGCGCGGTCGTTTTGATCGAGAGCCGCAAGGGCCG
TGACGTATCACCCGAGCAGGCGGCCAGCATGATCGGGCTGTCGCCGCGTCAGTTCGGGCGCCTGTTCCAGCAAGGCATCG
GCATGACTCCGAAGCGGTTCATCATCGAGACCCGCCTGCGTTACGCCCGCTTTCTGGTAGAAAACAGCACGCTCTCGATG
ACGCAGATCGCCTTCGAGACCGGCTTTTCGGATGCGGCACATTTCGCAACCGCTTTCCGCCAAAAATTCAACCAGTCGCC
GCGACAATTGAGATAA

Upstream 100 bases:

>100_bases
GTTCGACGAGGGAGAGCTTGCCACCGAAAGGCGGCGCTGAATTTTAGAAATCGGACATTTTCTTTGAAATAGCGACATGG
CTGACGTAAGGTCGGCCGCC

Downstream 100 bases:

>100_bases
GGGATTTCGGTTTCGCCTCAAAGAACACGGCGCGCCCTCCCCGAAGCAATCTTCCGCTCGACCGTCAAGGCCGAGTGCGA
CAAGCTCGACCCGGTGCATG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MNADANLSDAPAIEPDYVRWLDGLWAERLLAARDRKADLSIGILLWPSFPMMSLTGIVEPLRHAADFADNSRPLHCRWSI
MGAPGHAAVASCGIRVQADAPYINPTDFDYIAVIGGLLPHLRAAPSKHRDYLRVAASAGVAVIGVCTGVFVLAQEGLLTG
RKASVHPFHAEDFKIAFPRQAFSTRDDFLIENGRITVPGGVSILSLMTELIGTHCGPDRAAKAVHQLSLTEHKGLSAFDQ
GRVSSFRHVEDSRIQRAVVLIESRKGRDVSPEQAASMIGLSPRQFGRLFQQGIGMTPKRFIIETRLRYARFLVENSTLSM
TQIAFETGFSDAAHFATAFRQKFNQSPRQLR

Sequences:

>Translated_351_residues
MNADANLSDAPAIEPDYVRWLDGLWAERLLAARDRKADLSIGILLWPSFPMMSLTGIVEPLRHAADFADNSRPLHCRWSI
MGAPGHAAVASCGIRVQADAPYINPTDFDYIAVIGGLLPHLRAAPSKHRDYLRVAASAGVAVIGVCTGVFVLAQEGLLTG
RKASVHPFHAEDFKIAFPRQAFSTRDDFLIENGRITVPGGVSILSLMTELIGTHCGPDRAAKAVHQLSLTEHKGLSAFDQ
GRVSSFRHVEDSRIQRAVVLIESRKGRDVSPEQAASMIGLSPRQFGRLFQQGIGMTPKRFIIETRLRYARFLVENSTLSM
TQIAFETGFSDAAHFATAFRQKFNQSPRQLR
>Mature_351_residues
MNADANLSDAPAIEPDYVRWLDGLWAERLLAARDRKADLSIGILLWPSFPMMSLTGIVEPLRHAADFADNSRPLHCRWSI
MGAPGHAAVASCGIRVQADAPYINPTDFDYIAVIGGLLPHLRAAPSKHRDYLRVAASAGVAVIGVCTGVFVLAQEGLLTG
RKASVHPFHAEDFKIAFPRQAFSTRDDFLIENGRITVPGGVSILSLMTELIGTHCGPDRAAKAVHQLSLTEHKGLSAFDQ
GRVSSFRHVEDSRIQRAVVLIESRKGRDVSPEQAASMIGLSPRQFGRLFQQGIGMTPKRFIIETRLRYARFLVENSTLSM
TQIAFETGFSDAAHFATAFRQKFNQSPRQLR

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=100, Percent_Identity=39, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38615; Mature: 38615

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNADANLSDAPAIEPDYVRWLDGLWAERLLAARDRKADLSIGILLWPSFPMMSLTGIVEP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHH
LRHAADFADNSRPLHCRWSIMGAPGHAAVASCGIRVQADAPYINPTDFDYIAVIGGLLPH
HHHHHHHCCCCCCEEEEEEEECCCCHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHH
LRAAPSKHRDYLRVAASAGVAVIGVCTGVFVLAQEGLLTGRKASVHPFHAEDFKIAFPRQ
HHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCHH
AFSTRDDFLIENGRITVPGGVSILSLMTELIGTHCGPDRAAKAVHQLSLTEHKGLSAFDQ
HHCCCCCEEEECCEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHH
GRVSSFRHVEDSRIQRAVVLIESRKGRDVSPEQAASMIGLSPRQFGRLFQQGIGMTPKRF
HHHHHHHHHHHHHHHEEEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHH
IIETRLRYARFLVENSTLSMTQIAFETGFSDAAHFATAFRQKFNQSPRQLR
HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNADANLSDAPAIEPDYVRWLDGLWAERLLAARDRKADLSIGILLWPSFPMMSLTGIVEP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHH
LRHAADFADNSRPLHCRWSIMGAPGHAAVASCGIRVQADAPYINPTDFDYIAVIGGLLPH
HHHHHHHCCCCCCEEEEEEEECCCCHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHH
LRAAPSKHRDYLRVAASAGVAVIGVCTGVFVLAQEGLLTGRKASVHPFHAEDFKIAFPRQ
HHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCHH
AFSTRDDFLIENGRITVPGGVSILSLMTELIGTHCGPDRAAKAVHQLSLTEHKGLSAFDQ
HHCCCCCEEEECCEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHH
GRVSSFRHVEDSRIQRAVVLIESRKGRDVSPEQAASMIGLSPRQFGRLFQQGIGMTPKRF
HHHHHHHHHHHHHHHEEEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHH
IIETRLRYARFLVENSTLSMTQIAFETGFSDAAHFATAFRQKFNQSPRQLR
HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]