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The map label for this gene is ydhM [C]

Identifier: 209547725

GI number: 209547725

Start: 106754

End: 107347

Strand: Reverse

Name: ydhM [C]

Synonym: Rleg2_0114

Alternate gene names: 209547725

Gene position: 107347-106754 (Counterclockwise)

Preceding gene: 209547727

Following gene: 209547721

Centisome position: 2.37

GC content: 62.29

Gene sequence:

>594_bases
GTGCGGATCACCAAGGAAAAGAAACAGGAAAACTACGATCGGATTATCTCCACGGCGTCGGAGCTGTTTCGCGAGCGCGG
GTTCGATGGCGTCGGGGTAGCGGAGTTGATGGAGCGCGCGGGGCTCACCCATGGCGGCTTCTACAATCACTTCCGCTCCA
AGGAGGATTTGATCGCGGAGTCGACCGAGAATGGCTTGAACGAGACCTTGCAGCGCTATGCCGGTTATGACGTGCTCGCC
GTCATGGAACTTTATCTCGCGCGCGAACACCGGGATGGACGCGGCCAGGGGTGCACCGCTGCAGCGCTGAGCTGCGACGC
AGCTCGGCAGCCTGAGGAAACCAAGGCCGTTTTTGCTGCGGGAGTAGATAGACTGGTGCGCGCAATCGAGGACGGCATTG
CACGACACCACGTTTCCGACACCGGAGACCGCGCGCAGGCCATCACCATCCTTGCTCAGGCTGTCGGAGCGATCGTGCTG
TCGAGGGCCTGCCCGGATGATTCCCCGCTGGCGGACGAACTGCTCGACGCCTGCCGGGCGGATTGCCGCGACGCCATCGA
AAATCGGGCCCGAGATAATAGGGCCGCCGTATAG

Upstream 100 bases:

>100_bases
TATGACGGTCGCAATTATTAATGATATACATCATCAATAAGTCAAGCTATAATGATAGCTGACATCATAGTTGGGGCATG
GCGGTCGAAAGGGCTGTAAA

Downstream 100 bases:

>100_bases
GCGGCCCTATGCCGTCAAGCGCTAACCGGTTCGGCCATTTCGGGATAGTCCGTATAGCCCGCCGCGCCGCCGCCATAGAG
CGTCGCCATATCGAGATTGG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator Tetr Family; Transcriptional Regulator Protein; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator TetR Family Protein; TetR-Family Transcriptional Regulator; TetR Family Regulatory Protein; HTH-Type Transcriptional Regulator; TetR Family Regulator; Transcription Regulator Protein; TetR Family Transcription Regulatory Protein; Transcriptional Regulatory Protein TetR Family; TetR/AcrR Family Transcriptional Regulator; Orf_Bo

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MRITKEKKQENYDRIISTASELFRERGFDGVGVAELMERAGLTHGGFYNHFRSKEDLIAESTENGLNETLQRYAGYDVLA
VMELYLAREHRDGRGQGCTAAALSCDAARQPEETKAVFAAGVDRLVRAIEDGIARHHVSDTGDRAQAITILAQAVGAIVL
SRACPDDSPLADELLDACRADCRDAIENRARDNRAAV

Sequences:

>Translated_197_residues
MRITKEKKQENYDRIISTASELFRERGFDGVGVAELMERAGLTHGGFYNHFRSKEDLIAESTENGLNETLQRYAGYDVLA
VMELYLAREHRDGRGQGCTAAALSCDAARQPEETKAVFAAGVDRLVRAIEDGIARHHVSDTGDRAQAITILAQAVGAIVL
SRACPDDSPLADELLDACRADCRDAIENRARDNRAAV
>Mature_197_residues
MRITKEKKQENYDRIISTASELFRERGFDGVGVAELMERAGLTHGGFYNHFRSKEDLIAESTENGLNETLQRYAGYDVLA
VMELYLAREHRDGRGQGCTAAALSCDAARQPEETKAVFAAGVDRLVRAIEDGIARHHVSDTGDRAQAITILAQAVGAIVL
SRACPDDSPLADELLDACRADCRDAIENRARDNRAAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21609; Mature: 21609

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRITKEKKQENYDRIISTASELFRERGFDGVGVAELMERAGLTHGGFYNHFRSKEDLIAE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHCCHHHHHHH
STENGLNETLQRYAGYDVLAVMELYLAREHRDGRGQGCTAAALSCDAARQPEETKAVFAA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHH
GVDRLVRAIEDGIARHHVSDTGDRAQAITILAQAVGAIVLSRACPDDSPLADELLDACRA
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
DCRDAIENRARDNRAAV
HHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRITKEKKQENYDRIISTASELFRERGFDGVGVAELMERAGLTHGGFYNHFRSKEDLIAE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHCCHHHHHHH
STENGLNETLQRYAGYDVLAVMELYLAREHRDGRGQGCTAAALSCDAARQPEETKAVFAA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHH
GVDRLVRAIEDGIARHHVSDTGDRAQAITILAQAVGAIVLSRACPDDSPLADELLDACRA
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
DCRDAIENRARDNRAAV
HHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA