| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
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The map label for this gene is tme [H]
Identifier: 209547645
GI number: 209547645
Start: 33368
End: 35653
Strand: Direct
Name: tme [H]
Synonym: Rleg2_0033
Alternate gene names: 209547645
Gene position: 33368-35653 (Clockwise)
Preceding gene: 209547640
Following gene: 209547646
Centisome position: 0.74
GC content: 63.65
Gene sequence:
>2286_bases ATGCCCGATATCGATAAGAAAGACCGGCCGGCGACATCAGTTACTGACCAGGAGGCGCTCGATTTTCACGCCACGGGCCG GCCCGGCAAACTGGAAGTCGTCCCGACCAAGCCGATGGCGACGCAGCGCGACCTGTCGCTTGCCTATTCGCCGGGTGTCG CCGTGCCCGTCAAGGCGATCGCCGCCGATCCGCAGACAGCTTACGATTACACCGCCCGCGGCAATATGGTTGCCGTCATT TCCAACGGCACGGCGATCCTCGGTCTCGGCAATCTCGGCGCGCTGGCCTCCAAGCCCGTGATGGAAGGCAAGGCGGTGCT GTTCAAGCGCTTCGCCGACGTCGATTCGATCGACCTCGAAATCGATACGGAAAATGTCGACGAGTTCATCAACTGCGTGC GCTTCCTCGGCCCCTCCTTCGGCGGCATCAACCTCGAGGATATCAAAGCGCCGGATTGTTTCGTCATCGAAAGCCGGCTG CGCGAGCTGATGGACATCCCGGTCTTCCACGACGACCAGCACGGAACGGCGATCATCGCCGCCGCCGGCCTGATCAACGC GCTGGAACTGACCGGCCGCGACCTGAAGACGACCAAGCTTGTCTGCAACGGCGCCGGTGCTGCGGCGATCGCCTGTATCG AGCTCATCAAGGCGATGGGCTTTGCGCCGGAAAATATCATCCTCTGCGACACCAAGGGCGTCATCTATCAGGGCCGCACC GAGGGCATGAACCAGTGGAAATCGGCGCATGCGGCAAAGACCGATACACGCACGCTTGAGGAGGCGATGGACGGCGCTGA CGTGGTTTTCGGCTTGTCGCAGAAGGGCGCCTTCTCGGCCGAGATGATCCGCTCGATGGCGGATCGGCCGATCATCTTCG CCATGGCCAATCCCGATCCCGAAATCACCCCGGAAGAGGTGGCCCGCATCCGCGACGACGCCATCATGGCGACCGGCCGC TCGGACTACCCGAACCAGGTCAACAACGTCCTCGGCTTTCCCTATATCTTCCGCGGCGCTCTCGACGTCCGCGCTTCCAC CATCAACGACGCGATGAAGATCGCCGCGGTCAAGGCGCTGGCAAATCTTGCCCGCGAGGATGTGCCGGATGACGTGGTTG CCGCCTATCAGGGCAACCGGCCGCGCTTCGGCTCGCAATACATCATCCCGGTTCCTTTCGATCCGCGGCTGATCTCGGCG ATCCCGGTCGCGGTCGCGGAAGCGGCGATCGAAACCGGCGTCGCCCGCAAGGTCATCACCGACATGGCGGGTTATGCCCG CGAGCTTTCGGCGCGACGCGATCCGATCGCCTCGACGCTTGCCAGCCTGTATGAGCGGGTGCGCCGCCGCCCGAAGCGGA TCGTCTTTGCCGAGGCCGAGGAAGAACAGGTCCTGCGCGCAGCACTCTCTTACGCCAACCAGCAGCTCGGCACCGCCATT CTGCTCGGCCGTGAGGACCTGATCCGATCGACGGCCGAACGCGCCGGCATCGATCTCAACCGGCCGGGGCTGGAAATCGT CAATGCCCGTATTTCCACCCGGGTCGAGGCCTATATCGACTATCTCTATGCCAGGCTGCAGCGGCACGGTTATCTCCACC GCGACGTCCAGCGGCTGATACACAACGACCGCAACCACTTCGCCGCCACTATGGTGGCGCTCGGCGATGCCGACGGCATG GTGACGGGCATCACCCGCAACTATTCGACAGCACTTGAGGATGTGCGCCGCTGCATCGATGAAAAGCCTGGCCACCGCGT CATCGGTGTCTCGTTGGCGCTCTGCCGCGGCCGCACGGTCTTCGTGGCCGATACCGCGGTGCATGACATGCCGACGGCCG AGCAGCTTGCCGATATCGCCGAGGAGGCCGCCGGTCTGGCACGGCGCATGGGTTATCAGCCGCGCGTCGCCATGCTTGCC TATTCCACCTTCGGCCATCCCTCCGGCGAACGCTCCGAGCGGGTGCGCGAGGCGGTAAAGATCCTCGACAAGCGCCGCGT CGATTTCGAATATGACGGTGAAATGGCCGCCGATGTGGCGCTGAACCGCAAGGTGATGGAGCAATATCCCTTCTGCCGCC TCTCGGGTCCCGCCAACGTGCTGGTCATGCCGGCTTTCCACTCGGCCTCGATCTCGACCAAGATGCTGCAGGAACTCGGC GGCTCGACGGTGATCGGCCCGATCCTCGTCGGTCTCGACAAACCGGTGCAGATCACCTCGATGGGCGCCAAGGATAGCGA CATCGTCAACATGGCGGCGATCGCCGCCTATGGCGCGGGTTCGTAA
Upstream 100 bases:
>100_bases TTCCCAAAAAAACAGGTGCCAACCCTATCCGCGCGCCGCTATAGATGACAACAGCATTTGAGGAAGAGCGAAGCGTCGCC CACAGGACGTTGGAGGATTT
Downstream 100 bases:
>100_bases ACTCTCGGCCTTCCTATGAGACGGCATACCGTGCCTGGCCGACAGCACCTCGGCCGGGCACAGCTTTTTGTGGCTTACGC ATCCAGGAAACGGTTGAAAG
Product: malic enzyme
Products: NA
Alternate protein names: NADP-ME [H]
Number of amino acids: Translated: 761; Mature: 760
Protein sequence:
>761_residues MPDIDKKDRPATSVTDQEALDFHATGRPGKLEVVPTKPMATQRDLSLAYSPGVAVPVKAIAADPQTAYDYTARGNMVAVI SNGTAILGLGNLGALASKPVMEGKAVLFKRFADVDSIDLEIDTENVDEFINCVRFLGPSFGGINLEDIKAPDCFVIESRL RELMDIPVFHDDQHGTAIIAAAGLINALELTGRDLKTTKLVCNGAGAAAIACIELIKAMGFAPENIILCDTKGVIYQGRT EGMNQWKSAHAAKTDTRTLEEAMDGADVVFGLSQKGAFSAEMIRSMADRPIIFAMANPDPEITPEEVARIRDDAIMATGR SDYPNQVNNVLGFPYIFRGALDVRASTINDAMKIAAVKALANLAREDVPDDVVAAYQGNRPRFGSQYIIPVPFDPRLISA IPVAVAEAAIETGVARKVITDMAGYARELSARRDPIASTLASLYERVRRRPKRIVFAEAEEEQVLRAALSYANQQLGTAI LLGREDLIRSTAERAGIDLNRPGLEIVNARISTRVEAYIDYLYARLQRHGYLHRDVQRLIHNDRNHFAATMVALGDADGM VTGITRNYSTALEDVRRCIDEKPGHRVIGVSLALCRGRTVFVADTAVHDMPTAEQLADIAEEAAGLARRMGYQPRVAMLA YSTFGHPSGERSERVREAVKILDKRRVDFEYDGEMAADVALNRKVMEQYPFCRLSGPANVLVMPAFHSASISTKMLQELG GSTVIGPILVGLDKPVQITSMGAKDSDIVNMAAIAAYGAGS
Sequences:
>Translated_761_residues MPDIDKKDRPATSVTDQEALDFHATGRPGKLEVVPTKPMATQRDLSLAYSPGVAVPVKAIAADPQTAYDYTARGNMVAVI SNGTAILGLGNLGALASKPVMEGKAVLFKRFADVDSIDLEIDTENVDEFINCVRFLGPSFGGINLEDIKAPDCFVIESRL RELMDIPVFHDDQHGTAIIAAAGLINALELTGRDLKTTKLVCNGAGAAAIACIELIKAMGFAPENIILCDTKGVIYQGRT EGMNQWKSAHAAKTDTRTLEEAMDGADVVFGLSQKGAFSAEMIRSMADRPIIFAMANPDPEITPEEVARIRDDAIMATGR SDYPNQVNNVLGFPYIFRGALDVRASTINDAMKIAAVKALANLAREDVPDDVVAAYQGNRPRFGSQYIIPVPFDPRLISA IPVAVAEAAIETGVARKVITDMAGYARELSARRDPIASTLASLYERVRRRPKRIVFAEAEEEQVLRAALSYANQQLGTAI LLGREDLIRSTAERAGIDLNRPGLEIVNARISTRVEAYIDYLYARLQRHGYLHRDVQRLIHNDRNHFAATMVALGDADGM VTGITRNYSTALEDVRRCIDEKPGHRVIGVSLALCRGRTVFVADTAVHDMPTAEQLADIAEEAAGLARRMGYQPRVAMLA YSTFGHPSGERSERVREAVKILDKRRVDFEYDGEMAADVALNRKVMEQYPFCRLSGPANVLVMPAFHSASISTKMLQELG GSTVIGPILVGLDKPVQITSMGAKDSDIVNMAAIAAYGAGS >Mature_760_residues PDIDKKDRPATSVTDQEALDFHATGRPGKLEVVPTKPMATQRDLSLAYSPGVAVPVKAIAADPQTAYDYTARGNMVAVIS NGTAILGLGNLGALASKPVMEGKAVLFKRFADVDSIDLEIDTENVDEFINCVRFLGPSFGGINLEDIKAPDCFVIESRLR ELMDIPVFHDDQHGTAIIAAAGLINALELTGRDLKTTKLVCNGAGAAAIACIELIKAMGFAPENIILCDTKGVIYQGRTE GMNQWKSAHAAKTDTRTLEEAMDGADVVFGLSQKGAFSAEMIRSMADRPIIFAMANPDPEITPEEVARIRDDAIMATGRS DYPNQVNNVLGFPYIFRGALDVRASTINDAMKIAAVKALANLAREDVPDDVVAAYQGNRPRFGSQYIIPVPFDPRLISAI PVAVAEAAIETGVARKVITDMAGYARELSARRDPIASTLASLYERVRRRPKRIVFAEAEEEQVLRAALSYANQQLGTAIL LGREDLIRSTAERAGIDLNRPGLEIVNARISTRVEAYIDYLYARLQRHGYLHRDVQRLIHNDRNHFAATMVALGDADGMV TGITRNYSTALEDVRRCIDEKPGHRVIGVSLALCRGRTVFVADTAVHDMPTAEQLADIAEEAAGLARRMGYQPRVAMLAY STFGHPSGERSERVREAVKILDKRRVDFEYDGEMAADVALNRKVMEQYPFCRLSGPANVLVMPAFHSASISTKMLQELGG STVIGPILVGLDKPVQITSMGAKDSDIVNMAAIAAYGAGS
Specific function: Unknown
COG id: COG0281
COG function: function code C; Malic enzyme
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the phosphate acetyltransferase and butyryltransferase family [H]
Homologues:
Organism=Homo sapiens, GI4505143, Length=343, Percent_Identity=26.2390670553936, Blast_Score=89, Evalue=2e-17, Organism=Homo sapiens, GI62420882, Length=359, Percent_Identity=26.4623955431755, Blast_Score=84, Evalue=5e-16, Organism=Homo sapiens, GI62420880, Length=359, Percent_Identity=26.4623955431755, Blast_Score=84, Evalue=5e-16, Organism=Homo sapiens, GI239049447, Length=359, Percent_Identity=26.4623955431755, Blast_Score=84, Evalue=5e-16, Organism=Escherichia coli, GI1788806, Length=750, Percent_Identity=46.6666666666667, Blast_Score=649, Evalue=0.0, Organism=Escherichia coli, GI1788635, Length=316, Percent_Identity=31.6455696202532, Blast_Score=136, Evalue=5e-33, Organism=Escherichia coli, GI1788800, Length=325, Percent_Identity=32, Blast_Score=127, Evalue=3e-30, Organism=Caenorhabditis elegans, GI17537199, Length=369, Percent_Identity=27.10027100271, Blast_Score=74, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6322823, Length=269, Percent_Identity=30.4832713754647, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI24646388, Length=350, Percent_Identity=30.8571428571429, Blast_Score=103, Evalue=4e-22, Organism=Drosophila melanogaster, GI24646386, Length=350, Percent_Identity=30.8571428571429, Blast_Score=102, Evalue=7e-22, Organism=Drosophila melanogaster, GI281362674, Length=407, Percent_Identity=27.027027027027, Blast_Score=89, Evalue=9e-18, Organism=Drosophila melanogaster, GI21356279, Length=405, Percent_Identity=26.9135802469136, Blast_Score=89, Evalue=9e-18, Organism=Drosophila melanogaster, GI281362672, Length=407, Percent_Identity=27.027027027027, Blast_Score=89, Evalue=1e-17, Organism=Drosophila melanogaster, GI78707242, Length=488, Percent_Identity=25.2049180327869, Blast_Score=87, Evalue=3e-17, Organism=Drosophila melanogaster, GI78707238, Length=488, Percent_Identity=25.2049180327869, Blast_Score=87, Evalue=3e-17, Organism=Drosophila melanogaster, GI78707240, Length=397, Percent_Identity=26.1964735516373, Blast_Score=87, Evalue=5e-17, Organism=Drosophila melanogaster, GI78707232, Length=403, Percent_Identity=22.5806451612903, Blast_Score=69, Evalue=1e-11, Organism=Drosophila melanogaster, GI281363505, Length=403, Percent_Identity=22.5806451612903, Blast_Score=69, Evalue=2e-11, Organism=Drosophila melanogaster, GI78707236, Length=403, Percent_Identity=22.5806451612903, Blast_Score=69, Evalue=2e-11, Organism=Drosophila melanogaster, GI281363503, Length=403, Percent_Identity=22.5806451612903, Blast_Score=69, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015884 - InterPro: IPR012301 - InterPro: IPR012302 - InterPro: IPR012188 - InterPro: IPR016040 - InterPro: IPR002505 [H]
Pfam domain/function: PF00390 malic; PF03949 Malic_M; PF01515 PTA_PTB [H]
EC number: =1.1.1.40 [H]
Molecular weight: Translated: 82533; Mature: 82402
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: PS00331 MALIC_ENZYMES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDIDKKDRPATSVTDQEALDFHATGRPGKLEVVPTKPMATQRDLSLAYSPGVAVPVKAI CCCCCCCCCCCCCCCCCHHHEEECCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCHHHH AADPQTAYDYTARGNMVAVISNGTAILGLGNLGALASKPVMEGKAVLFKRFADVDSIDLE CCCCCCCCCEECCCCEEEEEECCEEEEEECCCCHHHCCCCCCHHHHHHHHHCCCCCEEEE IDTENVDEFINCVRFLGPSFGGINLEDIKAPDCFVIESRLRELMDIPVFHDDQHGTAIIA ECHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCCEECCCCCCEEEE AAGLINALELTGRDLKTTKLVCNGAGAAAIACIELIKAMGFAPENIILCDTKGVIYQGRT HHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCEECCCH EGMNQWKSAHAAKTDTRTLEEAMDGADVVFGLSQKGAFSAEMIRSMADRPIIFAMANPDP HHHHHHHHHHCCCCHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCC EITPEEVARIRDDAIMATGRSDYPNQVNNVLGFPYIFRGALDVRASTINDAMKIAAVKAL CCCHHHHHHHHHCCEEECCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ANLAREDVPDDVVAAYQGNRPRFGSQYIIPVPFDPRLISAIPVAVAEAAIETGVARKVIT HHHHHHCCCCHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH DMAGYARELSARRDPIASTLASLYERVRRRPKRIVFAEAEEEQVLRAALSYANQQLGTAI HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCEE LLGREDLIRSTAERAGIDLNRPGLEIVNARISTRVEAYIDYLYARLQRHGYLHRDVQRLI EECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH HNDRNHFAATMVALGDADGMVTGITRNYSTALEDVRRCIDEKPGHRVIGVSLALCRGRTV HCCCCHHEEHHEEECCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEE FVADTAVHDMPTAEQLADIAEEAAGLARRMGYQPRVAMLAYSTFGHPSGERSERVREAVK EEECCHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHH ILDKRRVDFEYDGEMAADVALNRKVMEQYPFCRLSGPANVLVMPAFHSASISTKMLQELG HHHHHCCCEEECCCHHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCCCHHHHHHHHHCC GSTVIGPILVGLDKPVQITSMGAKDSDIVNMAAIAAYGAGS CCEEEHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCCC >Mature Secondary Structure PDIDKKDRPATSVTDQEALDFHATGRPGKLEVVPTKPMATQRDLSLAYSPGVAVPVKAI CCCCCCCCCCCCCCCCHHHEEECCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCHHHH AADPQTAYDYTARGNMVAVISNGTAILGLGNLGALASKPVMEGKAVLFKRFADVDSIDLE CCCCCCCCCEECCCCEEEEEECCEEEEEECCCCHHHCCCCCCHHHHHHHHHCCCCCEEEE IDTENVDEFINCVRFLGPSFGGINLEDIKAPDCFVIESRLRELMDIPVFHDDQHGTAIIA ECHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCCEECCCCCCEEEE AAGLINALELTGRDLKTTKLVCNGAGAAAIACIELIKAMGFAPENIILCDTKGVIYQGRT HHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCEECCCH EGMNQWKSAHAAKTDTRTLEEAMDGADVVFGLSQKGAFSAEMIRSMADRPIIFAMANPDP HHHHHHHHHHCCCCHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCC EITPEEVARIRDDAIMATGRSDYPNQVNNVLGFPYIFRGALDVRASTINDAMKIAAVKAL CCCHHHHHHHHHCCEEECCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ANLAREDVPDDVVAAYQGNRPRFGSQYIIPVPFDPRLISAIPVAVAEAAIETGVARKVIT HHHHHHCCCCHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH DMAGYARELSARRDPIASTLASLYERVRRRPKRIVFAEAEEEQVLRAALSYANQQLGTAI HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCEE LLGREDLIRSTAERAGIDLNRPGLEIVNARISTRVEAYIDYLYARLQRHGYLHRDVQRLI EECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH HNDRNHFAATMVALGDADGMVTGITRNYSTALEDVRRCIDEKPGHRVIGVSLALCRGRTV HCCCCHHEEHHEEECCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEE FVADTAVHDMPTAEQLADIAEEAAGLARRMGYQPRVAMLAYSTFGHPSGERSERVREAVK EEECCHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHH ILDKRRVDFEYDGEMAADVALNRKVMEQYPFCRLSGPANVLVMPAFHSASISTKMLQELG HHHHHCCCEEECCCHHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCCCHHHHHHHHHCC GSTVIGPILVGLDKPVQITSMGAKDSDIVNMAAIAAYGAGS CCEEEHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9535928; 11481430; 10407149 [H]